Pste012604.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold799:33015-35481[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.1 2.4e+02 2.1 0.1 14 23 283 292 281 292 0.89 2 11 7.4e-05 0.003 17.6 1.1 2 23 326 348 325 348 0.97 3 11 0.00052 0.021 14.9 0.6 2 23 354 375 353 375 0.96 4 11 0.085 3.4 7.9 1.2 7 23 381 398 381 398 0.91 5 11 0.0037 0.15 12.2 0.3 1 23 403 426 403 426 0.95 6 11 0.35 14 6.0 2.3 2 17 437 452 436 454 0.93 7 11 2.7e-06 0.00011 22.1 0.6 1 20 475 494 475 496 0.96 8 11 0.0029 0.11 12.6 2.6 1 23 504 526 504 526 0.98 9 11 0.12 4.9 7.4 3.8 2 23 533 555 532 555 0.95 10 11 5.3e-05 0.0021 18.0 2.0 1 23 561 583 561 583 0.98 11 11 5.6e-05 0.0022 17.9 0.4 1 23 589 612 589 612 0.98
Sequence Information
- Coding Sequence
- ATGAGCTGCTCAGTAATCAACTGCCCATCTACTCCAGGCAAGGATCTTTCATTCTTCAACTTTCCAGATTCAAAATCTCAAGAATATTCTAAGTGGATAAAATTTTGTGGTCGTGGAGTAGATTGGAAGATTAAGGGTGGATACCAGGTGTGCGAGCTACATTTTAAAGATAGTGATAAATCTGATTCATGTCGAATTTGTTTATCTACTCTTGAATCTGACTTGAAATCATTGTCATTGAAACATGGTGAAATTTTCATTTGGGAAATGCTAGAATATGTTACCACCGTTCAGGTTCGACAAGATGATATGATGCCTCAATATATTTGCCAAAACTGCTTCAATAAAGTTGTGAATGGTTATGACGTCAAAAAACTAGGATTAGAGACTGAACATAAATTAAGGATGTTGTTGGAACCAATTAGAGATATAAAAGTGGAAGAAGAAATTCATTTTTCTGAAGTTCTCATGGATGTTTTGGATGTAAAAGTTGAGGGACTTGAAACAGTTGATGATGAAGATAACCTACTGAATCATAATTGGCTTGTCAAAAACTCAGATGAAGCCTATGATAGTTTTAATTACCAACCATCTATTTATTTAGAACCTGAAAATGCTCTTTCACATCAAAACGACGAAGTTTACAATTTCCTGAAAGTAGAAAAACCTTCCAACTTAAAGCTCAGAAAGGAAAGATATAAGAAAAACAGTCTTCATACAGGAGATGAAGTAATCAAAGATGAAAATCCAGCTATGAGGCATAAAAAGCAAAAATACAAACCTGCCGAAAAAGATGCCAAAATTTATACTTGTCTAATTTGTAAAGTAGACAACATTCCCGGCCTAAAAAACTACGAAAAACACATGAGAGATCATAAACGTGATAAAGATCCACCACCACATACTTGCATCACATGCAAAGCCAGCTTTTATTTAACAAGTGTCTTTTTGAACCACAAATGTCCTCAAAAGCAGAAATGTGGAATTTGTGGTATGGAATTTCCTTTGAAAAGTAATTTTAACAAGCATCTTCACACTGTGCATATCAAAGAGAAGCTAGAATGTCCTGTTTGCGAGGAAGTTTTTAAACATCCGTTGACTCTTCATTATCACATTAAAGCTCACACYGAGAATGTTTTTGGTTTTACCTGTCGTCACAAAAGCAAYTTATACAAGCATATGGCCCGAACTCACCTAAACATAAAATATTATTGTGAYCAATGCGACGCCAGTTATGTCGAAAAACAAGCTCTCACCATGCATCAAGTACGAAAACACGAATCAATTGCTAAAATTCTCGGAAARTABAAATGTGAAAAATGTGGAGCTGGTTTTTGCTACTTGAGTCAGCTTAAGTTCCATGATGAGAAAGTTCATCTGAAAATTAGACCTAATGATGGACGATCTGGTGGTTTGGAACCTTTTCAGTGCACTAAGTGCCCTAAAACATTCAACCAAAAAGTGAACTGGAAAAAGCACATGGACGCTTGTTTGTACGGAAAATACGAGTTCCCTTGTAACATATGTCATAAACAGTTTATGCAAAAGCATATTCTAGCTGGTCACATGTTAACACATGGCGAGGAGAAGAAGTTGGAGTGCAAACAATGTGGTATTAGAATGCACAACAAAGCAAACATGAAAAGACATCACACGACAGTTCATCTGCAAATTAAAAGTTTTTCGTGCGATCTATGCGATAAGAAGTTTTCAATTAAAACTGCCATGCAGACTCATCGAAGAACACACACGGGTGAAAAGCCATTTAAATGTCCGCAATGTGATGTAGCTTATGGTGACAGAAGCACCTTGTACAAGCATTTGCAAAAGATTCACGGTGTGGCAAAGCCTAGCATTTCTATTTTCAGTAAATAA
- Protein Sequence
- MSCSVINCPSTPGKDLSFFNFPDSKSQEYSKWIKFCGRGVDWKIKGGYQVCELHFKDSDKSDSCRICLSTLESDLKSLSLKHGEIFIWEMLEYVTTVQVRQDDMMPQYICQNCFNKVVNGYDVKKLGLETEHKLRMLLEPIRDIKVEEEIHFSEVLMDVLDVKVEGLETVDDEDNLLNHNWLVKNSDEAYDSFNYQPSIYLEPENALSHQNDEVYNFLKVEKPSNLKLRKERYKKNSLHTGDEVIKDENPAMRHKKQKYKPAEKDAKIYTCLICKVDNIPGLKNYEKHMRDHKRDKDPPPHTCITCKASFYLTSVFLNHKCPQKQKCGICGMEFPLKSNFNKHLHTVHIKEKLECPVCEEVFKHPLTLHYHIKAHTENVFGFTCRHKSNLYKHMARTHLNIKYYCDQCDASYVEKQALTMHQVRKHESIAKILGKXKCEKCGAGFCYLSQLKFHDEKVHLKIRPNDGRSGGLEPFQCTKCPKTFNQKVNWKKHMDACLYGKYEFPCNICHKQFMQKHILAGHMLTHGEEKKLECKQCGIRMHNKANMKRHHTTVHLQIKSFSCDLCDKKFSIKTAMQTHRRTHTGEKPFKCPQCDVAYGDRSTLYKHLQKIHGVAKPSISIFSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -