Pste007890.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold119:229579-233379[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.2 3.3e+02 1.7 1.4 3 23 79 99 77 99 0.76 2 17 1.4e-05 0.00057 19.8 1.6 1 23 106 129 106 129 0.96 3 17 4.6 1.9e+02 2.5 1.6 2 23 137 161 136 161 0.89 4 17 0.0033 0.13 12.4 4.9 1 23 167 190 167 190 0.97 5 17 1.3 50 4.2 3.1 1 23 228 251 228 251 0.93 6 17 0.00033 0.013 15.5 0.8 1 23 257 282 257 282 0.95 7 17 0.014 0.58 10.4 1.4 2 23 323 346 322 346 0.88 8 17 0.23 9.4 6.5 6.5 1 23 352 374 352 374 0.95 9 17 0.0066 0.26 11.4 1.5 3 23 381 403 379 403 0.91 10 17 0.023 0.92 9.7 0.5 1 23 409 434 409 434 0.95 11 17 0.0036 0.15 12.2 0.6 2 23 440 462 439 462 0.95 12 17 0.1 4 7.7 1.6 2 23 650 671 649 671 0.95 13 17 1.1e-05 0.00045 20.1 2.1 1 23 677 699 677 699 0.99 14 17 0.045 1.8 8.8 2.1 1 23 706 729 706 729 0.92 15 17 0.15 6 7.1 3.0 1 23 734 759 734 759 0.94 16 17 0.015 0.6 10.3 3.1 1 23 765 788 765 788 0.93 17 17 0.23 9.2 6.6 0.9 1 10 804 813 804 815 0.91
Sequence Information
- Coding Sequence
- CCAATAAATGAATCTTCAGACAGTTCAAATTCAGAATCCTCCCTCAACCTTTTTGCAAGAGTAAAACTCGAGAATAAAGAAGAMGAGCCAATAATTCCAAATAAGTCAATTGTGAGATCTAAGCGAATTGCAAARCAAGTCCGTGATTCTCTAAAAGCCGAAAAGAAGCCAGTAGTGCATGGAAAGCTGGTCGAAGGTTGTGAAGACAACAGAATGAAAGACAAAAGCATTATCTGCAACGTTTGCAAACAAGTCTACAAATATCTTTGTTTCAAGGAGCACCTCCTCAGAGCTCACTTTGAGAGCTGTAAGAAACATGTCTGCCAGACCTGTGACAAAAAGTTTGTATACTTATCGGAATTGAAAACACACATCAATTCGATTCATGGACCAAAGAAACGTGAATTACGATGCAGTTATCCAAGCTGTCAATTCTTCTGTACAAGTACTGAGACTTTTAATTTGCATATGGATGTAGAGCACTTAGAATTAAAACCACATAAGTGCGACAAGTGCAATGCAAAATTTGGCTATAGAAGACTTCTGAATAAGCATCACCGTGTTGTACATGAAAACAAAAAACCTAAAAGTGATATTGGAGTTTGCGACATTTGCGGTCTACATACGTTTTTGCACAAAATGAAGGAGCACATCGCGAAAAAACACAGACCTAAGCGAGATTTYATCTGCGATATCTGCGGAAAAATTCAATCCACGTTCAAACTAATAAAAGAACATATTCACAGATGTCACACTTTCACCAAGGAGTATTTTTGCAAAATTCCAAATTGCGATAAAGGATTCGTTACATACCGGGAGCTTTACTATCATATGAGGGTCCGACACATCCCTCTGGTATTAGTGCCTAGAAAACGCCAACAGTGTCCGTATCCTMATTGCAATGCTTCTATTACTATGAGCATGCCTGCGCATATTAAACGAGTCCACATGTTACAAAAAAACCATTCTTGTGTGTTTCCTGGATGCAATAAAGCATTTTTTACTAGTACTTCGTTAAAGTATCATACAGCTGAACATCTACCAGAAGCAAACTTCATTTGTCAAACGTGTGGTACAAAATTCAAATCRCAATTTAAATTAACTTGTCATAGTAAAAAACATGAAACACCCAGAATCATATGCACTTTTGAAGGATGTGACCAGAAATTTCATACTCCATATGAATTAAAGAAACACAGTTACCGTCACAATCCGAAAAGAGATTTCAAATGCACCATTGGAGATTGCAACAAAGCATATTTTTTGAAAAAGTACTTGGATGATCACATTAAAGATATTCATTTCGTGGAAAAAGTTCAATGTGAACTATGTTCCTCTAATTTTGCAAGACCTTCAACTTATCGCTTACATATGAAGGACAAGCACAAAGATATTGGCGAGGAGAGAATGGCATCTATGTTAGCAAAGATTAGAACTTTGAAACCTGATTTTGAAAAAATGAATCATTGGAACGAAGGAGTGAAGATGTACGAAAACTGTAGATTATGCTTGAAATCAAATGGGTCAAGCAAATTTTTGGACTTTTCGTATCAAATGAATAGTAGTTTAACGGTTTTGGAGTGCTACAAATTGTTTACATCAATTTATTTGGAAAATGGAGCTACTGCCAAAATTTGTTCTGACTGTTTGTTGAAACTTATCTCATTTTATGATTATCGATGTAAGGTTATAAAAAACAATGATTTTGTCGTTGAATTTGAAGTAAATGAAGCAAAACCTGTTGACAACGTAAATGCTGAGCCAAATGATGAGATTGTGGATGATCCCCTGAGTGCTGCTTACAAAATATTTGAAATAAAAGTTGAACCAGGGACTGAAGACTTGAAAATAGTCCCTGTTTGCGGAAGTGATCAGACACCACGAAAACCAGGAAGCAAAAAAAGATCACTGGGATATGAGCATGTTCCAAAACCAGATCAAAGAGTTATGTGTAATCTTTGTGGTAAAGATTACCATTTTCAAGCTTATAAGAGACATTACCTTACTATACATTCTACTGATTCGAGGTTTAAATGCTCAGAATGTCCAAAAGGTTTTCCTGATAAACATCGCTTGCTGAAACACCAACTGACTCACAAACCAATTGTTGAAGAATATACCTGTGATAAATGCAACAAGAAGTTTGTATGGAAATCTAGCATTGCTCTCCACGTTAAGCATTCCCACAAAAACATCGTCTATATTTGCGAGTTTCCTGGATGTCTTAAAACTTTCAATCGATTGCACTACAAGACCAAACATTATAATAACATGCATTTGTCTATTCATCCTTACAATTGCCATATTTGCAAGAAAGGTTTCAATGCAAAAATTCATTACGACAATCACATGGCCGATAAGCATGGCAACACAAATCCATTCAAATTGTATCGACGTAGGAAACAAACGTATAATTGTGATATTTGTGACAAAACCTTCCAAAAA
- Protein Sequence
- PINESSDSSNSESSLNLFARVKLENKEXEPIIPNKSIVRSKRIAKQVRDSLKAEKKPVVHGKLVEGCEDNRMKDKSIICNVCKQVYKYLCFKEHLLRAHFESCKKHVCQTCDKKFVYLSELKTHINSIHGPKKRELRCSYPSCQFFCTSTETFNLHMDVEHLELKPHKCDKCNAKFGYRRLLNKHHRVVHENKKPKSDIGVCDICGLHTFLHKMKEHIAKKHRPKRDFICDICGKIQSTFKLIKEHIHRCHTFTKEYFCKIPNCDKGFVTYRELYYHMRVRHIPLVLVPRKRQQCPYPXCNASITMSMPAHIKRVHMLQKNHSCVFPGCNKAFFTSTSLKYHTAEHLPEANFICQTCGTKFKSQFKLTCHSKKHETPRIICTFEGCDQKFHTPYELKKHSYRHNPKRDFKCTIGDCNKAYFLKKYLDDHIKDIHFVEKVQCELCSSNFARPSTYRLHMKDKHKDIGEERMASMLAKIRTLKPDFEKMNHWNEGVKMYENCRLCLKSNGSSKFLDFSYQMNSSLTVLECYKLFTSIYLENGATAKICSDCLLKLISFYDYRCKVIKNNDFVVEFEVNEAKPVDNVNAEPNDEIVDDPLSAAYKIFEIKVEPGTEDLKIVPVCGSDQTPRKPGSKKRSLGYEHVPKPDQRVMCNLCGKDYHFQAYKRHYLTIHSTDSRFKCSECPKGFPDKHRLLKHQLTHKPIVEEYTCDKCNKKFVWKSSIALHVKHSHKNIVYICEFPGCLKTFNRLHYKTKHYNNMHLSIHPYNCHICKKGFNAKIHYDNHMADKHGNTNPFKLYRRRKQTYNCDICDKTFQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -