Pste009113.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold21:178174-182178[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.81 32 4.8 0.4 2 23 244 266 243 266 0.96 2 12 0.087 3.5 7.9 0.5 3 23 289 310 288 310 0.94 3 12 0.00056 0.022 14.8 0.3 3 23 320 341 319 341 0.92 4 12 0.016 0.64 10.2 2.8 2 23 411 433 410 433 0.93 5 12 0.08 3.2 8.0 0.8 1 23 441 466 441 466 0.95 6 12 1.3 54 4.1 5.0 1 23 472 495 472 495 0.96 7 12 0.0012 0.049 13.7 7.1 1 23 534 556 534 556 0.96 8 12 3.3e-05 0.0013 18.6 1.1 1 20 562 581 562 584 0.94 9 12 0.0016 0.064 13.3 3.4 1 23 590 612 590 612 0.96 10 12 0.00018 0.0071 16.4 0.9 1 23 618 640 618 640 0.98 11 12 9.6e-05 0.0039 17.2 1.4 1 23 646 668 646 668 0.97 12 12 1.4e-05 0.00055 19.9 1.3 1 23 674 697 674 697 0.95
Sequence Information
- Coding Sequence
- ATGGATAATTTAGCATTTTGTAGACTGTGTGGAGATAGAAAACCATATTTGGTGGACCTGAAATTAGTTAAATCTTTTTTACAAAAATATTCTAATATAAATCTCGAATTCCACGTCAATTTGCCTGAAACAGTTTGTACTGATTGTGTCCTRGTTATAAAAAACTTTGATACATTTACCTTGAAAGTGAAAGAGACTCAATACCGTCTCTTATCTTTGATCGAAGATCCACAAACTTTACTAAATTTGGATGATCTTAAAACAGAACTACAAAATGATACAGACGAAGAAGTTGATGCTCAACCTTTAAAATTCTTGGTCAGTGACATCAACAGCACAAATCAAACGGCCACTAAACAAGAAGACTGCTTGGACATTCCAACAATTTTTCTGGATACTACCMACAACTTATCAGGTGATGAAACAAGTCCTACTGGAAGTGAAGATGAATCAGATGAAGAAAATAGAACCTCTCATACTGGATCAGATGATAGCTGCGTAAAGACGAGAAAAAAGGCTAAATCTAAAAAAGTTCTCACATCAAAAAAATCCCTGAGAAGTCAGAAAGGATCACTGAAAAAAGTTATATCCCAAGTCTCTATAATAGACTTTAAAAGTAACAATACATCCACAAATTTCCTCGAAATTYCAGAAAAAGAGAAGAATCGTGATGGATCTGTAACACTGGAAGGCAGTTTACGATTTTCTAAAGGTTGGGATTTGCAAATGAAATGTTTGGAATGTAGTGAGGAAGTTGGAAGTCCATTTTTGATGAGACAACATTACAAGAAAACTCATAATGCAATTGGCTTGGAAAAGTATCGCTGTAATTACTGTGAGACTGAAATCAACTTTTACAATAATTGCCTAATCTGTTCTAAGATGTTCTGGAACTTAAACAATCTTTTCGAGCACTATCAAAATATTCACACAGCAGATAGTGGAAGAATAAATATGTGCCTCGTGTGTGGGAAATATTTCAAAAAGCCATATGATCTGAAGGAGCACGAGGCYAGTCGTCATCTCATCCAAATCTTAAAAGATGAACCTGAAAAAATACAACCTCAAACTATCACTGTTGAAAAATTATTTGCTGTKGAGCTGRMTAGTGATATGCTKGAAAATAAATATATCTTTAACATTCCCGACMACGAAAAAAATTCTGATGGATCTGTGACTGAAGAATGTGCTTTAAGATTCTCAAATTGCAAGTGGAGTGATTATAATCTRAACTGCCATRAATGTTCGACTGACTTCAATTCTAGTTTTGAGCTAAATAATCATTATAATGCAAAACATCCGGATTTAAAAGTTCGCTACTTTAATTGCAGAGATTGTCCTGAGACAAAGCTTTTCAGTAATAATGAGTCTTATATGAATCACATTTTTACTATGCACAAAGAGCATTTGAGATATTGCTGCTTCGTCTGCTCAAAAATGTTTTGGAACTTCAAAGCTTTGTTTCTACACTACAAAAAAAATCATTCCAAGATTCGTTTGCATATCTGTTTGTACTGTGGTAAAAATCACAAATGTGGGTATGATTTAAAATGCCACAAAGAAGTTCATTTTCCTAAATCAAAGGACAATGAGACAAGGTTTCATTGCAACTTGTGTTCAAAATCTTATAATAAGAAGCATTTGCTGACAAGACATATGGATTATCATAATGATGTTAAATCTTACGTGTGCGAGATTTGCGGTAAAGGATTTATTACCAAGGCTACGCTCCAGAACCATAAATTATGTCATAGCGACCTTCGACCATTTGAGTGTGATATATGCAAGGAAACGTTTAAGAATAAATACAAGCTGAAATTTCACCGGACTATGCATTTTGATGAAAGGGCATTTGAATGCGAAATCTGCAAACAGCGATTTAGGGCAAAAGGTACCCTTAAAGGTCATTATATGACCCATACAGGGGAACGTCCTTTTGCTTGTGAGTACTGTGAAAAGAAGTTYTCTGCTAAGCATGACTTGGTTGTCCATACTCGWTTACATACKGGAGAGTTTTCACATTCTTGCACAGTTTGTGGAGAACGATACCCAAGTTGGAGTAATTATAGCAAACATATGAAAGGTCGCCATCAAATAGACGTTCGATCTGAGAAAAAGAAAAAGTATGATGAGCTGCACAAAAAAGTTGAGACTCGAGTGGAAATGCCCGGAAAATCTTCAGAGGTGAGCTTTGGAGATAATTTGCCTATTCAGAGCTATTTCAGTGGAGATCAGTATTAG
- Protein Sequence
- MDNLAFCRLCGDRKPYLVDLKLVKSFLQKYSNINLEFHVNLPETVCTDCVLVIKNFDTFTLKVKETQYRLLSLIEDPQTLLNLDDLKTELQNDTDEEVDAQPLKFLVSDINSTNQTATKQEDCLDIPTIFLDTTXNLSGDETSPTGSEDESDEENRTSHTGSDDSCVKTRKKAKSKKVLTSKKSLRSQKGSLKKVISQVSIIDFKSNNTSTNFLEIXEKEKNRDGSVTLEGSLRFSKGWDLQMKCLECSEEVGSPFLMRQHYKKTHNAIGLEKYRCNYCETEINFYNNCLICSKMFWNLNNLFEHYQNIHTADSGRINMCLVCGKYFKKPYDLKEHEASRHLIQILKDEPEKIQPQTITVEKLFAVELXSDMLENKYIFNIPDXEKNSDGSVTEECALRFSNCKWSDYNLNCHXCSTDFNSSFELNNHYNAKHPDLKVRYFNCRDCPETKLFSNNESYMNHIFTMHKEHLRYCCFVCSKMFWNFKALFLHYKKNHSKIRLHICLYCGKNHKCGYDLKCHKEVHFPKSKDNETRFHCNLCSKSYNKKHLLTRHMDYHNDVKSYVCEICGKGFITKATLQNHKLCHSDLRPFECDICKETFKNKYKLKFHRTMHFDERAFECEICKQRFRAKGTLKGHYMTHTGERPFACEYCEKKFSAKHDLVVHTRLHTGEFSHSCTVCGERYPSWSNYSKHMKGRHQIDVRSEKKKKYDELHKKVETRVEMPGKSSEVSFGDNLPIQSYFSGDQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -