Pste005742.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- ABCC10
- Assembly
- None
- Location
- scaffold11:71384-74756[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0017 0.069 13.2 5.9 1 23 572 595 572 595 0.97 2 9 3.5 1.4e+02 2.8 0.8 1 8 622 629 622 630 0.91 3 9 0.0044 0.18 12.0 1.1 1 23 650 672 650 672 0.95 4 9 0.0057 0.23 11.6 4.6 1 23 679 701 679 701 0.96 5 9 1.5e-05 0.00061 19.7 1.6 1 23 707 729 707 729 0.99 6 9 0.0037 0.15 12.2 0.4 1 20 736 755 736 756 0.95 7 9 6.2e-06 0.00025 21.0 0.7 2 23 766 787 765 787 0.96 8 9 0.0021 0.084 13.0 5.8 1 23 793 816 793 816 0.95 9 9 0.0065 0.26 11.4 2.3 2 23 823 844 822 845 0.94
Sequence Information
- Coding Sequence
- ATGAACGATGATCGTTCCGAGTGCAGTGATGATTTAAGTTACTTGGGAGGAGATTCCAGAAGTGCTTCSCCTCATCAAAAAAAAGTTGTCTTTGTTAATCAAGATGATAACACCAGCTTAGATAGTGTAATGAAAGAAGAAACCAAAGAGCATGGAAATGTTAACAGTAGAGTTGTTTTCTCTTATTGGAAGTCAATGTCTGGTTTTCTTGGATTTAGTGTGTTGGTATCAGTGCTTTTGATGCAAGCTTCGAGGAACATAACAGATGCTTGGCTTGCTCACTGGGTGAGTGCCACTACAATAAATGGAAGCTCAACACCATCCAACTCTTCAGATTATTCTGATACAAACTTTTATCTAAAAATTTACACAGTATTAGCTTTGCTTAATTCAGCAATAACTTTGGTCAGATCKTTCTTGTTTGCCTATGCTGGAATCAAAGCAGCCAAAACCAAACTGTCRTTCTTTGACATCACGCCTCTAGGAAGRATTTTRAATAGATTCTCATCGGATACCTACACTATTGATGATTCCTTACCATTTATCTTGAACATATTGCTGGCTCAACTTTTTGGATTAATGGGAGCTATAATCGTCAGTTTRTATGCTTTGCCTTGGTTGGCTTTGATAATCGTCCCTCTGGTGCCGATTTACTTAGATCTTCAAGGRAAATATCGAAATGCTTCTCGTGACATTAAAMGACTTAATTCAAACGCTTTGTCACCACTTTATGCTCATTTTACCGAGACTTTGCAAGGACTTCCAACAATAAGAGCTATGAGAGCCGCCAATCGYTTCCAACAAGATTTCTCCTTCAAGCTTGAGGAGTCTGTGAGAGCTCAAATAAGTGCAGCAGCTGCTCAGCARTGGCTYGGTTTGCGWTTGCAGTTCCTTGGAGCAATTTTAGTTGGTGGAACAGGAATTTTAACTGCAATGACTTCAGCTCACACTTTAAATCCTGGAWTGGTSGGATTAGCAATTTCCTATGCTTTRTCGATTACAAGTTTGCTRAGTGGTGTATTGAACGCGTTTGCTGAGACTGAACAGGAATTTATTGCTATTGAAAGAGTAGATCAATACTCTAAACTTGAACCAGAAGTAAATGCAGATGGTAGTGCAGATCCACCTTTTGGRTGGCCTTTCCAAGGAGTTATCAAATTCCATGATCCCCTTCTCTCAGTGGAATTGTTTGAATTTACGAGTGAATTTGGAATTTCTGATGTTGTTACAAACGCATCGTCGACTGCCAGCTTCTTTCAGATTCACACATGCTACAAGAAGATAGTTTGCCCATTAACCACCAACGAGTCAACCACCTCCAAAATATGCACAGTTTGTTTACAAGAGCTGAGGGCAGCATTTGTTTTCCATCARAAATCTTTAAGGAATTGTGCCATTTACAAGCGTAAAGTAGCATCTGGCMGAGTAGGAAGASCAATTGCACCTTCCAACGAAGTTAAAAAAGAACCAGATGATCTGATAGAAGAAGATGTAGAAGAATTGGACCCTAGAACAGGAAACTTGAAAACAGAGTATGTTGAATACGATCAAGTGGAATATTTGGAGCCTAATGACTACCTTGATATGGATTATGAAGAAGATGACGAGTCTCATGATGGAAAATACGAACTAAAACCATCGATTAAACAGAGATCTCCAAGAAAACCCAAACGAGTGAAGCTTGAAAGCGAAGAATTAAATGAAAGTGTTGTTTATTGCTGTGGATTTTGTCCAAAAACATTTGAAAAGAAAGACTACTATCGTCGYCACTTCCGACGTCTKCACGTTGATGAGCAAATTGAAATTGAAACAGCTATTCTCATTGAGCAAAACCGAGAAGATGAAGTGAAAGACTTGCAAATGTACCAGTGTGAGCATTGTGGCCAGATTGAAGTCATCAAGACCAAACACATGGAGCACAAGCTATCGCATCATTCTGAAAACCTTTATAAGTGTAAGCATTGCGATGCAAAATTCCCCACGCGTGAGATCCTGAAAGAGCATGTCGCGAATCACGGAGAGATAAAAAGAGCGTTCATGTGTGACATATGTGGATCAGATTTCAGGAACAAGCACGCACTTAATACTCATTGTAGGCGGCATACTGGCGAAAGACCATTCCAATGCGAAGTTTGCGCCAAGAAATTTGCACACAATAATACGCTGAAGATTCACATGGAAACGCACAATGAAGATCGAGCTACTTTCGCTTGTGAAGTTTGCGGACAATTTTGTCAAACAAAAGCTTCCCTGAAGAACCACATCATTTGCTTCCACAAAACTGAGCTGAAAATAAAATGTCCTTCATGCGACAAATCTTTTGTGGACAAATCCAAACTAAAGATGCACCAGGCTTACCATATTGGAGATAAGAAGTTTACATGTACGCTTTGTGGACAGAAGTACTACAAGACCAGCCATTTGAAAAGACATGTTCAGCATGTGCATATGAAATTAAGGCTCTGGAAGTGTGAATACTGCACCTCAGACTTTGTAAGAAAAGAGACATATCGCACCCACATCTTGAATCACCACAAAGGATTGAGTGCTCCCGAATTGGAAATGATTATGGAGAAAATYAAGAACTTCCGGGAACCAGACCTTGATATAGATGCATTTACTTTGGARAAGCAGCARAAAAAYTTTACAGCTCTCGACAAAAGTGAGACTATACAATATGAAGAAATTGAGGAAATGTTCTAA
- Protein Sequence
- MNDDRSECSDDLSYLGGDSRSASPHQKKVVFVNQDDNTSLDSVMKEETKEHGNVNSRVVFSYWKSMSGFLGFSVLVSVLLMQASRNITDAWLAHWVSATTINGSSTPSNSSDYSDTNFYLKIYTVLALLNSAITLVRSFLFAYAGIKAAKTKLSFFDITPLGRILNRFSSDTYTIDDSLPFILNILLAQLFGLMGAIIVSLYALPWLALIIVPLVPIYLDLQGKYRNASRDIKRLNSNALSPLYAHFTETLQGLPTIRAMRAANRFQQDFSFKLEESVRAQISAAAAQQWLGLRLQFLGAILVGGTGILTAMTSAHTLNPGXVGLAISYALSITSLLSGVLNAFAETEQEFIAIERVDQYSKLEPEVNADGSADPPFGWPFQGVIKFHDPLLSVELFEFTSEFGISDVVTNASSTASFFQIHTCYKKIVCPLTTNESTTSKICTVCLQELRAAFVFHQKSLRNCAIYKRKVASGRVGRXIAPSNEVKKEPDDLIEEDVEELDPRTGNLKTEYVEYDQVEYLEPNDYLDMDYEEDDESHDGKYELKPSIKQRSPRKPKRVKLESEELNESVVYCCGFCPKTFEKKDYYRRHFRRLHVDEQIEIETAILIEQNREDEVKDLQMYQCEHCGQIEVIKTKHMEHKLSHHSENLYKCKHCDAKFPTREILKEHVANHGEIKRAFMCDICGSDFRNKHALNTHCRRHTGERPFQCEVCAKKFAHNNTLKIHMETHNEDRATFACEVCGQFCQTKASLKNHIICFHKTELKIKCPSCDKSFVDKSKLKMHQAYHIGDKKFTCTLCGQKYYKTSHLKRHVQHVHMKLRLWKCEYCTSDFVRKETYRTHILNHHKGLSAPELEMIMEKIKNFREPDLDIDAFTLEKQQKNFTALDKSETIQYEEIEEMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -