Pste007493.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold297:122426-126633[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0027 0.11 12.6 2.2 1 21 76 96 76 97 0.96 2 15 0.012 0.48 10.6 4.0 1 23 183 205 183 205 0.96 3 15 0.015 0.61 10.3 0.6 1 21 209 229 209 233 0.91 4 15 0.24 9.4 6.5 2.4 1 23 251 274 251 275 0.96 5 15 0.27 11 6.3 0.1 3 20 282 299 281 301 0.92 6 15 0.41 17 5.8 0.4 1 21 320 340 320 341 0.93 7 15 0.38 15 5.9 4.2 1 23 352 375 352 375 0.97 8 15 0.00066 0.027 14.6 0.9 2 23 382 403 382 403 0.97 9 15 0.069 2.8 8.2 0.8 3 23 413 434 412 434 0.92 10 15 9.1e-06 0.00036 20.4 0.4 2 19 441 458 440 461 0.94 11 15 2 80 3.6 0.1 10 23 460 473 459 473 0.90 12 15 0.01 0.42 10.8 1.1 3 23 483 504 482 504 0.96 13 15 0.00024 0.0098 15.9 1.5 2 23 511 533 510 537 0.91 14 15 0.016 0.65 10.2 0.4 1 23 539 562 539 562 0.97 15 15 0.0096 0.38 10.9 2.0 3 23 569 590 567 590 0.92
Sequence Information
- Coding Sequence
- ATGCAGTTCAAACTTAGATCGAATGAGTCAAATAGAAGAATTTTGCTCGAAAACGAGAACGAACAGATGATGGATGATGATGATGAAAAAGAGATTCCAATTAGTACAGACATGCTCAAAAATGAAGAGTTGAAACTAGAAGTAATGGATTTTTTGATTCAGGAAGTAGAAGAAACACCAACACAACCAGAAGTTATAAGTGAAAATATAAAGCTGGATGCTCACTACATTTGTGATCGCTGTGGTGAAAACTTTAAGCTCAAATGTTATCTACGAGATCACATGAAACATTGTTTTAAAAAACTAAGCCACCAAGGAACTATTCAGCCGTATTCAAATCTTCCAGTTTGTGGTCGAATGTGGGATGAAAAGTATCAAAGAGGTCGTCCAATTTGCTTCAAATGTAATGTTATGAAGTCTAACTACCAAATCTTCAAACGACATTATTATACAACTCATTTAGATCAGAATGCTCTTCTGCAAGAAGGAAAAACTATGATAGAATCAAATGTCCCATTCAACCCTTCCAGCAACAAGAAACTCCCATTTGAGTGCAAAACATGCTCAAAACGTTTCTCRAATAGAAAATTCTACGATGACCATCGACTCCAACATAAATACATTTATGAATGTGACATATGTAAGGCCAGATTTAAATCTATCAAAGGATTATCAGATCATGTGAACTTTTTCAATCATGAGCCGCATGATATGCAGGATTCCTTGAAGCTGGTTCCTCCGTATGACCTATATCAGTGTGTTTTTTGCTCGAGGTATTTGATGGATCCTGTGACATTGAGAAATCATTATAAATATCTACATCATAACCAACAACCAAAGATTTGTAAAGCGTGTGGAAGACAGTTTGATACCATGCAAAAATTATGGGACCATAGAGAGGAAATGAAAGGAAAAACTCACACCAGAAACAACGTCAACTCGTCCTTGTATGCTCCTTTCAAGTGTATAAAATGCCATGTAGATTTCATAACTGATCGACAGCTCCAAGAACACATAGCAAAATGCAACTATGTCAATCAAAATAAAATTGAGCACCAATGCAAATATTGTATGTTTACAACATACAATGATATGGGTTTGCAAAGGCATATGATGAAAAAACATAATATCACGCATGGACGAGAATGCGATTTATGTTCTAGAACCTTTCAATCATTTACAGATTTAAAAGTTCATATTACAACCCATTTAAAAAAACCAGGCGATGCAAAAATTTGCGATTCTTGTGGCAAACAGTTTCAATCTAAAGATGCTTTGATATTCCACAACCGGCGATTCCATGATCCAGCATCTCTTTTAGTTTGTGAAATCTGCTCTAAAACGTTTGCGACAAAATCCCAACTAAGGAGGCATGCCTTTCAATCATTGAAAGATTTAAAAGCTCATATTGCAACCCATTTAAAAAAACCAGGCGAAGCACCAATTTGCGATTCTTGTGGCAAACAGTTTCAATCTAAAAATTCTTTGATATTCCACATCCGGCGATTTCATGATCCAGCATCTCTTTTAGTTTGTAAAATCTGCTCTAAAACGTTTGCAACGAAATCCCAACAAAGGAGGCATGGTTTTGTTGCACATCTGAAACAACATGCTTTTACTTGCTTGGGATGCTCAAAGAATTACAACGTACCAACTCTTGTTAAAGATCATATTTTAAGGAAACATCTTAATTTTTCGATTGATTGTTCAATTTGCAGTAAAAAGTATTTTGTAAAAAGGACACTTCAAAGACACCTTCATGCAAGTCACGAGCAGCATCCAAAATTTAAAGAAGCTTGGGAGCTTTGTGGAGCTGTAAAACTGCCTTCTCTTAAAGAATTAGCTGTTCAGGGTCACATTAAAATGAACAAGCTTGTACAAATTCAATAG
- Protein Sequence
- MQFKLRSNESNRRILLENENEQMMDDDDEKEIPISTDMLKNEELKLEVMDFLIQEVEETPTQPEVISENIKLDAHYICDRCGENFKLKCYLRDHMKHCFKKLSHQGTIQPYSNLPVCGRMWDEKYQRGRPICFKCNVMKSNYQIFKRHYYTTHLDQNALLQEGKTMIESNVPFNPSSNKKLPFECKTCSKRFSNRKFYDDHRLQHKYIYECDICKARFKSIKGLSDHVNFFNHEPHDMQDSLKLVPPYDLYQCVFCSRYLMDPVTLRNHYKYLHHNQQPKICKACGRQFDTMQKLWDHREEMKGKTHTRNNVNSSLYAPFKCIKCHVDFITDRQLQEHIAKCNYVNQNKIEHQCKYCMFTTYNDMGLQRHMMKKHNITHGRECDLCSRTFQSFTDLKVHITTHLKKPGDAKICDSCGKQFQSKDALIFHNRRFHDPASLLVCEICSKTFATKSQLRRHAFQSLKDLKAHIATHLKKPGEAPICDSCGKQFQSKNSLIFHIRRFHDPASLLVCKICSKTFATKSQQRRHGFVAHLKQHAFTCLGCSKNYNVPTLVKDHILRKHLNFSIDCSICSKKYFVKRTLQRHLHASHEQHPKFKEAWELCGAVKLPSLKELAVQGHIKMNKLVQIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -