Pste007875.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- Cdc5l
- Assembly
- None
- Location
- scaffold119:220645-226916[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.2 1.3e+02 2.9 0.2 3 23 991 1011 989 1011 0.88 2 12 0.00039 0.016 15.3 0.6 1 23 1017 1040 1017 1040 0.94 3 12 0.74 30 5.0 2.8 1 11 1048 1058 1048 1076 0.65 4 12 0.14 5.5 7.3 0.4 3 21 1105 1122 1104 1125 0.73 5 12 0.012 0.48 10.6 1.0 3 23 1133 1153 1131 1153 0.97 6 12 1.6e-05 0.00063 19.7 1.3 1 23 1159 1182 1159 1182 0.96 7 12 0.017 0.69 10.1 1.6 1 23 1188 1213 1188 1213 0.92 8 12 0.029 1.1 9.4 0.2 1 23 1219 1241 1219 1241 0.92 9 12 0.015 0.59 10.3 1.2 3 23 1249 1272 1247 1272 0.87 10 12 0.0064 0.26 11.4 6.9 1 23 1277 1299 1277 1299 0.98 11 12 2.1e-05 0.00083 19.3 2.0 1 23 1305 1328 1305 1328 0.95 12 12 0.16 6.3 7.1 0.1 2 23 1334 1356 1333 1356 0.93
Sequence Information
- Coding Sequence
- ATGCCTCGTATTATGATTAAAGGTGCTAGATGGTACGAATGGCTTGACCCTAGCATTAAAAAAACTGAATGGTCTCGAGAGGAAGATGAAAAGTTGCTACATTTGGCCAAGTTGATGCCCACACAATGGCGAACCATAGCTCCAATTATCGGACGCACAGCTGCTCAATGTTTAGAGCGTTATGAGCATTTGCTGGATCAGGCTCAACGTAAGGAGGAGGGAGATGAAGGAATAGACGACCCCAGAAAGCTAAAACCTGGCGAGATTGATCCAAATCCGGAAACTAAACCGGCTAGACCAGATCCACAAGATATGGATGAAGATGAATTGGAGATGTTATCAGAAGCAAGAGCTCGTTTAGCCAATACACAAGGTAAAAAAGCCAAGAGGAAGGCTCGAGAGAAGCAGTTGGAAGAAGCAAGACGTCTAGCTGCCTTGCAGAAGCGTCGTGAGCTACGTGCTGCTGGTATTGGAGTAGGAAATCGTAAGCGACGTATGAAGGGAATCGATTACAACGCTGAAATTCCATTTGAAAAGAAACCAGCTCCAGGTTTCTTCAATACAGCTGAGGAATTTGTCGTCCCAATATCTGCAGATTTCTCTAAACTTCGCCAGCAGAATTTAGATGGTGAATTGCGTACAGAGAAGGAAGCACGAGAGCGCAAGAAAGACAAGGAGAAGTTGAAAAAGAGAAAAGAGAGTGATATTCCAATGGCGATGCTGCAAAATGCTGAACCAGAACGCAAGCGATCTAAGTTGGTACTGCCAGAACCACAAATATCTGATTTGGAGTTGCAACAAGTTGTAAAACTCGGTAGGGCAAGTGAAATTGCCAAAGAAGTAGCTTCAGAGAGTGGWATTGAAACAACAGACGCTTTGCTGGCCGATTACAGCATCACTCCACAAGTATCAGCTACTCCAAGAACTCCAGCACCAATCACTGATCGTATAATGCAGGAAGCAATCAATGTAATGGCTCTGACTCACGTGGACACTCCGCTKAAAGGAGGTGAAAACACTCCACTCACTCAAACGGACTTTTCTGGTTCTCTTCCACAATCTTTGGTTCAAGCTACTCCAAACACCGTTATTGCAACTCCATTCCGATCTGCTCGTACTGACGGTGGAGAAAGTACTCCTGGTTTTGCTACACCATCATCATCTAGTGCATTGATTCCGTTTGGAACACCAGCAGGCAGTAAGAGTGTATCTTATACTCCACAACACGTTCGGGACAAATTAAACATCAATCCTGAGGATAACATGAGTGTTGCTGATACACCCGCAGCGTATAAAAATTACCAGAAGCAATTGAAGTCGTCACTGCGTGAAGGATTGTCACTTTTGCCGACTCCAAGGAACGATTACGAGATTGTTGTGCCCGATAACGAAGAAGAGGCGAATGATAATGAAAACAAAGGAAACACAATTGAAGACCAGGCAGATTTGGATGCTAACAATATTGCTGTGGAGAAGGAACGTCGTCGTAAAGAGTTATTGCAGAGATCCCAAGTAATTCAAAGAAATTTGCCTCGTCCCGTTGATATCAACATTAGCGTTTTGAGACCTGCTACTGAAATGCAAGGTTTATCAGAATTGCAACGTGCTGAAGAACTTATCAAGCAAGAGATGGTCACAATGCTCCATTATGATGCGTTGAATGATCCAGTCACTATTGGTGGTCTTCAACAAAAGAGAAATTTGAGCAGTTTGGCCTCGTTCCTTGATCAAAATTCATATGATGACTTTGATCCAAAGGATTTGGTGACTGCTCAAAATATGCTCAAGGAGGAGATGCAACACGTTAAAACTGGAATGGGGCATGGAGAACTTTCGTTGGAAAGTTATTCGCAAGTATGGCAAGAATGTTTAAGTCAAGTTCTTTACTTGCCAAGTCAAAATCGTTATACTAGAGCAAACTTGGCGAGCAAGAAAGATCGCATTGAAAGTTCAGAGAAGAAATTAGAACAGAATCGTAAGCACATGGCTAAAGAAGCAAAACGGTGTGGAAAAATTGAGAAGAAACTTAAAATGTTGATGGGAGGTTATCAAGCTCGTGCACAAGCTTTGATCAAACAGTTACAAGATACTTATGAGCAGATTGAGCAAAATTACTTGGCGCTGTCCACTTTCAAGTTCTTGAATGCTCAAGAAAATGCTGCCATTCCGAAACGTTTGGAGTCTTTGAATGAGGATGTTGTAAGGCAAACTGATCGTGAGAGGCAATTGCAACAACATTATGCTATGCTGATGAATGAGTTGGAGAGCTTGCCCACTACCAATGGAGTGGCTATTAATGTGGTTCCTACTTTATCAGCTTTTCTCCTGGATTCCAGCTTTAAAATGGATCAATTTTGTAGGTTGTGCTTGGAAGAAGATATTGAAAATAGTTTTTCACTGTTTACAAAGAAGAATCAAGGCAGATTAGCAGTTTCTGAGTTGTATAAAATCATTACTTCTGTTTTTGAAGATCAGGAAGAAATTGATAATTCAAAGATTTGTGATAATTGTTTAGTAAAAGTTGATGAATTTGAGGATTTTAGAAACTTATTGATTATTAATAATGTTGCTGTTATTAAATTAAGGCTGAATCAATCTTGTTCTAATTCTACTCAAAAAATCATCAAAAATGAACAAAACGATCAATTGACTTGCTTTGGAATCCCTGGAGATCCTTTACAAGATGCTTACAGTTTGGTTGAAATAAAATTGGAAGATATGGCTGATGAATTTGTTCCTTATTTAGAAAATAATGGAGAAAATGAAGTTGTAAAAGAGGAAGATGAAGTTGAGGTCAAATTTACACCAATGGCCAGTGAAAAGAGGTCTAAAGAAAAAACAACTTTAATAGAATCAAAATTAAGTAAATCCAAAGAGCTTCCGATAAGCAAAGAAAGGTTTGTTTCATCGGATCACGGAGTCTTATTAAAGGGTCATAAAAAATTGCTGAATAATCAAAAGAGAATTATTTGCAATTACTGCAATATGGAGCTGAGCTATTCTGGCTTCAGACAACACTACAATGCGATTCATCGCCAAGACATTAAATTCGCTTGTGATGAGTGTGACTTATCATTTACCAGGAAATTTAGATTGAAAGAGCATAAACTCATTGCTCACACGGTTCCAGATACTACAGCTTTTCCTTGTAATATCTGCGATAGAAGCTTCCCAGTCAACACTTTCTCCACCAAAAATAGCGCAAAAGATCATATGACAAGAGAACATCCCGAATTTTTAGTTAAAAAGGAAGGAAAATCACAAGAATCAGCCATTGATAAGAAAAAGGAGAAATTGAAACAAAAAGTGTTGTGTACTCTCTGCGGCAAGTCATTTCGTCGAGACGTTCTACCTAAGCATACAAAGTTGGTTCATCTACGAAAAAAAGATTATGGTTGCGATATTTGTGGAAAACAATATGGCCTAAAGTTCCACGTTCGAGATCACATGCTGAGGCATTTAGGCATCAAAACCTTCACGTGCCTGCAATGCAATAAAGGCTTCACAAATCCAAGTGACCTGAGATCTCACAGAAATCAAACACATAATCTTACTGAGTGGTTCCCTTGTACTTATCCTGATTGCACCAGGAATTTTAATATGAAGCAAAAACTTACCAAACACATTGAATTCTTTCATCTGCGTTTAAGGCCTTTTGCTTGCTCTCAATGTGATAGACGTTTCTTCGCCAAATCTGAGGTAACAGCTCACGAAGCGGAACATTTTGATGCCACAGATTTTCTCTGCGATTTCCCAGAATGCCAGAAAAAATTCAAATCAGCTTGGAAGTTGGCTAGACACAAAACTTACTTTCATACGACCCCAAAATACAAATGCAATTACTGTGATAAAACTTACCATCATCAGAAGAAGATGCGGGAGCATGAAAATGTCCACAAGAATATTAGAGAGTACAGTTGCGTTCACTGTGATAAAGCTTACTCGACTAGCTCTTATTTGAGGATGCATATCAAAGACACTCACTTCAAATCAAAAATTAGCTGTGAATTATGTGGAAGTAAACTAGCAAGAAGGGAGAATTATACAATGCATGTTAAAGCAGTTCATAAAGATTTAGGGCCTGAAGCAATGGACGCTCTTTTAACAAAGATTAAGACAATTAAAGCTGACTACGATCGAATGGAATATCTTACCTTGATCACAGTTTGGAGTATCACAATCGTTACCAACGTGAACATCTGA
- Protein Sequence
- MPRIMIKGARWYEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEHLLDQAQRKEEGDEGIDDPRKLKPGEIDPNPETKPARPDPQDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIGVGNRKRRMKGIDYNAEIPFEKKPAPGFFNTAEEFVVPISADFSKLRQQNLDGELRTEKEARERKKDKEKLKKRKESDIPMAMLQNAEPERKRSKLVLPEPQISDLELQQVVKLGRASEIAKEVASESGIETTDALLADYSITPQVSATPRTPAPITDRIMQEAINVMALTHVDTPLKGGENTPLTQTDFSGSLPQSLVQATPNTVIATPFRSARTDGGESTPGFATPSSSSALIPFGTPAGSKSVSYTPQHVRDKLNINPEDNMSVADTPAAYKNYQKQLKSSLREGLSLLPTPRNDYEIVVPDNEEEANDNENKGNTIEDQADLDANNIAVEKERRRKELLQRSQVIQRNLPRPVDINISVLRPATEMQGLSELQRAEELIKQEMVTMLHYDALNDPVTIGGLQQKRNLSSLASFLDQNSYDDFDPKDLVTAQNMLKEEMQHVKTGMGHGELSLESYSQVWQECLSQVLYLPSQNRYTRANLASKKDRIESSEKKLEQNRKHMAKEAKRCGKIEKKLKMLMGGYQARAQALIKQLQDTYEQIEQNYLALSTFKFLNAQENAAIPKRLESLNEDVVRQTDRERQLQQHYAMLMNELESLPTTNGVAINVVPTLSAFLLDSSFKMDQFCRLCLEEDIENSFSLFTKKNQGRLAVSELYKIITSVFEDQEEIDNSKICDNCLVKVDEFEDFRNLLIINNVAVIKLRLNQSCSNSTQKIIKNEQNDQLTCFGIPGDPLQDAYSLVEIKLEDMADEFVPYLENNGENEVVKEEDEVEVKFTPMASEKRSKEKTTLIESKLSKSKELPISKERFVSSDHGVLLKGHKKLLNNQKRIICNYCNMELSYSGFRQHYNAIHRQDIKFACDECDLSFTRKFRLKEHKLIAHTVPDTTAFPCNICDRSFPVNTFSTKNSAKDHMTREHPEFLVKKEGKSQESAIDKKKEKLKQKVLCTLCGKSFRRDVLPKHTKLVHLRKKDYGCDICGKQYGLKFHVRDHMLRHLGIKTFTCLQCNKGFTNPSDLRSHRNQTHNLTEWFPCTYPDCTRNFNMKQKLTKHIEFFHLRLRPFACSQCDRRFFAKSEVTAHEAEHFDATDFLCDFPECQKKFKSAWKLARHKTYFHTTPKYKCNYCDKTYHHQKKMREHENVHKNIREYSCVHCDKAYSTSSYLRMHIKDTHFKSKISCELCGSKLARRENYTMHVKAVHKDLGPEAMDALLTKIKTIKADYDRMEYLTLITVWSITIVTNVNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01160409;
- 90% Identity
- iTF_01160409;
- 80% Identity
- iTF_01160409;