Pste007951.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold568:63132-68254[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.9 76 3.7 4.3 1 23 17 38 17 38 0.94 2 19 6.7 2.7e+02 2.0 0.8 2 23 163 183 162 183 0.81 3 19 2.4e-06 9.5e-05 22.3 0.6 1 23 189 212 189 212 0.98 4 19 0.25 9.9 6.5 3.1 2 23 217 239 216 239 0.93 5 19 1 42 4.5 0.3 6 23 300 318 300 318 0.95 6 19 0.052 2.1 8.6 1.3 3 23 345 366 343 366 0.87 7 19 0.68 27 5.1 4.1 1 23 397 420 397 420 0.92 8 19 1.5e-05 0.0006 19.7 0.7 1 23 483 506 483 506 0.97 9 19 2.5 99 3.3 4.5 1 23 510 533 510 533 0.94 10 19 0.00052 0.021 14.9 1.9 1 23 544 567 544 567 0.94 11 19 0.047 1.9 8.7 1.5 1 22 576 597 576 600 0.89 12 19 0.026 1.1 9.5 1.2 1 23 645 667 645 667 0.96 13 19 0.0065 0.26 11.4 0.8 2 23 773 794 772 794 0.97 14 19 4.3 1.7e+02 2.6 0.6 2 23 801 823 800 823 0.92 15 19 3e-05 0.0012 18.8 0.7 2 23 961 983 960 983 0.95 16 19 0.4 16 5.8 0.0 2 23 991 1012 990 1012 0.97 17 19 0.00029 0.012 15.7 1.3 1 23 1017 1040 1017 1040 0.95 18 19 0.00018 0.0072 16.3 4.6 1 23 1094 1117 1094 1117 0.98 19 19 0.033 1.3 9.2 0.3 1 21 1223 1243 1223 1244 0.93
Sequence Information
- Coding Sequence
- CTGGCTACCCAYATGCGTAGCACGCACACCGAAAAAGAGTTGGAACCATTCTGTTGTCCAATTTGTCAAAAAATGTGTCCTGGAACATTGAAGTGGCATTTGTCAAGGTTTCATAAAATGGATGAAAATCAAATGGCAGCAATYGGAATTTCACCAGAAGGTGCAGCGACATCAATCGTGATGCCAGTAATAAARGTTGCTCAAAGTGTTGCTACGGCTACAGGAAACTTACGTTGTGAACCTTGCAATAAAAAYTTCCAGGCTAGGCATTATTACAACATGCATATGAAATGCATTCATGGTGTTAAAGGTGAACCAAAAGAATCTCTAAAGGTAATTCAAGTTGTTGAAGTCCCAAAAATTCCAGWTCCAACAAATTCCACTRAATCAGTAAGCGAAACCTCCACACATGAAAACGGAGACGCCTCCACATCTACTGAAGATATTTGCGATCAGTATCAATTCATGCGTGGTCGTTTGGATGTTAAATGCAAGATCTGTTCGAAAATCATCAAATTCAAGTATGTATCTCGCCACATGGAACTTCACATGACCAAGAAAAAATATAAGTGCGATAGTTGCGGTGAGAAATTTGCTAGGTCTGACTACTTGTCGAGACATATACGAAATGTTCACCTTGATGAGTTAAAATGTCATATTTGCAACCATCAATTGTACAGAAAAGCTCTCTATTATAAGCATTTGTTGGAGGTCCATCAAATTTCTGAAGAATTGGCGAATAATACTTTGCTTGAACAAAGTGATATGGATKWTMACATGAATGGAGATAGCTTTCAAGACGGCCATGATGAACAAAGTGGTGATGAGCCTGAAGCTGGAAGAGAAGAACCAGAAGTTCAAAGYTTTGCACCAGCCACAGAACTACGTTGTATTCCCTGTAATCGAGTGTTTTCTGCTGAAAACTACTACAATGTTCACATGAAATTYAAGCATTCGAATGTAGAAGTACCCATCACTATAAAATCACAACCTCAACAACAACAAGTTATTCAAATAACCACGAATCTCTTTTGTGAGCCTTGCAACAAACGCTTTTCAAGTGAATATTATTTGAATGTACACAACAAATTCAAGCATAGTGTTATCATGAAAGAAGAGCCTTCTGACAAAGCGCTAGTCATTTTTAATATTACGGAGGTGGCGGAGTCTTCGAAAGAAACAGATGGGCATACTTGTATATTCTGCAAGAAAAATTTCAAAATCTTGTACAAATACAACGCACATATGAAGATCAAACATGGAGTGGACCCGACATCCTCTCAGTTGACTATAGAAAAATCAGCACAACAAACGCCCCTGCAAAATCCAGGAGTCATGAAGCTCAACTTTAAYGCGTCCATTGATGAAAACAGCCAGCCGAACGTCTCATCCGTTTCAACATACACAGCTCCATCAGTGCGACCTTTATCAAAAAATAAGGTAGCATACGAATGTGATATATGCCAGATAACATTCTCAAGACGCGACTATCTCGATCGCCACGTWAAATCGAACCATACTAACGAATTTGATTGCCAAATGTGCAACCATCAACTCAGTACTTTCCACTATTTCATGTTGCACATGGAAAACGATCACAAAAATTTTAATATAGAATTRTTGGGCGAACATGAGTGCAARGTGTGCCATAAGAAGTTTGTAGAGTCGGAAAATCTGGTTTTACACATAGCCAACAAACACTCAGGGAAACCAATTCTGAACAAACACAATTGTGGTCTTTGTGGTTTACAATTTGGGAATAAGAAGCTAATGCAAAAACATGTTAAATACAAGGGTCACAATAATTTGCTCAAGCTGCTGGCAAAAAGAAATATCGAAGTAAAGTCTGCTGAAGTTGGTGTTCGAGAKGAAGAAAACGAGAGTGAAGARATCAATTTTAGGTTTTTGCCGCTTTTGAAAGAGAATGGATCATTTGAGTGCAGAATTTGTTCAAAATCKTTCCCGCAAATGAGAAAAACTGTTGCRCACACCAAAAACCACAARGAAGTATTCATACATCAGTGCTCGCATTGCAACTATACCTTCCTAGAAAAGAAAACTCGGGACAAACATTTCCGTCAGTTTCACAAAGAAGCAGCTAGTCTACTTGAGAAACTGAACCAGACTGCTCCAGAACACTCAAATCTCAACCAAACTATGTCAGATCCAGTCCAATCAACACMATTCGACTCATTTGTTCCGCCACCMCCTAAAMGAGCAAGAATGTCCCTTCCAAATCCTGTGAAAACTACTATCTCACCATCTATTGAAGATTTGGCCAGGTTGAATATTCTACGTGGTCCAAAAGGAAAATCTCAGTGCAAAATCTGTGGTCTTCTTTTTAATAAAAGGAACGAGGTAATGCAGCATCTTAAATCGCACCCTGAAATACCGCACATTGTTTGCACAGTTTGTGGTTTTATATCGTTCGGCCAGCGTTTCCTGAACTTCCACATGAGGAAAACTCACGGTTTGGGACCAGACGGAATAGCTGTTACAGTGGATGTGCCTTTAAAACAAAGTGAAGAGATCAAAGAAGCTGCTCCAGTTGAAGATTTGTCACCAATTGAGATTTCAGCGAAAAAAATGATGGATTTTAGCTTAAGAAGGAGAACTCGTTTATCTGTAGCTGAAAGGTCAAGATTTGTGGTTGTTGAAGAGCCTACTACGTCATCTCAAGTAACATCCAAGGTCATAACAGTTCCACAATCACAAGTCTCTACGATGACAAAAAGCATCCCTGAAGTTTCGCAAAATTCTTCAGAAGTTGTTGCTAAAGCCTTAGATCTTTCACCTTCAGCTGTTACGACCATAGATCTCTCAGATTCAGAGGATGCAKATAGCAAYTTAGTTGCTACATCAGCCAGCAAAAGTCKTGTGGAATGCAAAATTTGTCAAAGGAGGTTTACTCAAATTGAAAACTTGCAGAACCACATACAATATCGTCAYATTACGGATAATCCTGAGAATAAATGTGGTGTGTGCGGGAATTTACTAGGTAGCCCTTCTCTTCTTGTTGAGCATCTTAAGATACATCAGGATAATAAATTTAGTTGTGAAATTTGCGAAAAGAGTTTYAGTTTGAAGCAAGCACTGCTCAAGCACAAAGAGAAATTCCATAGTATTAATAAAGCTGATAAAGARCKGACTGACAATATTAATCCAAAAAGTATTGGCGATATGTTGAACAACTCCAGTAAAAAAGAAGTGGTGGGAATGGCAGCATTATTAACGGTAGCTGCAGCCAAAGCCAAGAAAAAGGGATTCAAGATCAAGTTTTACAAGTGCAATTTTTGTGAGAAGCATTTTACAAGAAAGGATCGATTGATAACTCATCGAAAAATTGAACATAAAAAACAACTTGGAAAACCCGGCGAAGAACAGAAGAACACAAACCAAGAGACTGATGAGGAAGATTTTGAGGTGGTTGAKGAAATGGACGTAGAWAGCGAATTAGTTGATGAAATATCAAATGAGTCGATTACGGCTACAGATAAAGCAAACAAAATTTTATCGAATATGAGTCTGCCATCTTCAATCACAATTACCAGAATAWCAAAAACTTCTAAACAAACTCCAGAAACTGGCTTAATTAWAKCAACACAAACAACTTCTGYCGGCACACTCAACCAGAACAAAGAAGGGCACACAGATAAAGTAAAGTCATTTGCGTGTGAAAAGTGCAAGATTACATTTGCACAGGAAGTTTTTTTGGAAAACCACAAGCAGTATTTTTGTTACTACACTAAGCAAATCAACGCTGACAGCAGTAATGGACCATCCACTCCACTTGTTTGA
- Protein Sequence
- LATHMRSTHTEKELEPFCCPICQKMCPGTLKWHLSRFHKMDENQMAAIGISPEGAATSIVMPVIKVAQSVATATGNLRCEPCNKNFQARHYYNMHMKCIHGVKGEPKESLKVIQVVEVPKIPXPTNSTXSVSETSTHENGDASTSTEDICDQYQFMRGRLDVKCKICSKIIKFKYVSRHMELHMTKKKYKCDSCGEKFARSDYLSRHIRNVHLDELKCHICNHQLYRKALYYKHLLEVHQISEELANNTLLEQSDMDXXMNGDSFQDGHDEQSGDEPEAGREEPEVQSFAPATELRCIPCNRVFSAENYYNVHMKFKHSNVEVPITIKSQPQQQQVIQITTNLFCEPCNKRFSSEYYLNVHNKFKHSVIMKEEPSDKALVIFNITEVAESSKETDGHTCIFCKKNFKILYKYNAHMKIKHGVDPTSSQLTIEKSAQQTPLQNPGVMKLNFNASIDENSQPNVSSVSTYTAPSVRPLSKNKVAYECDICQITFSRRDYLDRHVKSNHTNEFDCQMCNHQLSTFHYFMLHMENDHKNFNIELLGEHECKVCHKKFVESENLVLHIANKHSGKPILNKHNCGLCGLQFGNKKLMQKHVKYKGHNNLLKLLAKRNIEVKSAEVGVRXEENESEEINFRFLPLLKENGSFECRICSKSFPQMRKTVAHTKNHKEVFIHQCSHCNYTFLEKKTRDKHFRQFHKEAASLLEKLNQTAPEHSNLNQTMSDPVQSTXFDSFVPPPPKRARMSLPNPVKTTISPSIEDLARLNILRGPKGKSQCKICGLLFNKRNEVMQHLKSHPEIPHIVCTVCGFISFGQRFLNFHMRKTHGLGPDGIAVTVDVPLKQSEEIKEAAPVEDLSPIEISAKKMMDFSLRRRTRLSVAERSRFVVVEEPTTSSQVTSKVITVPQSQVSTMTKSIPEVSQNSSEVVAKALDLSPSAVTTIDLSDSEDAXSNLVATSASKSXVECKICQRRFTQIENLQNHIQYRHITDNPENKCGVCGNLLGSPSLLVEHLKIHQDNKFSCEICEKSFSLKQALLKHKEKFHSINKADKEXTDNINPKSIGDMLNNSSKKEVVGMAALLTVAAAKAKKKGFKIKFYKCNFCEKHFTRKDRLITHRKIEHKKQLGKPGEEQKNTNQETDEEDFEVVXEMDVXSELVDEISNESITATDKANKILSNMSLPSSITITRIXKTSKQTPETGLIXXTQTTSXGTLNQNKEGHTDKVKSFACEKCKITFAQEVFLENHKQYFCYYTKQINADSSNGPSTPLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -