Basic Information

Insect: Parochlus steinenii
Gene Symbol: Bcl11a_1
Assembly: None
Location: scaffold578:43933-50826[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.07 2.8 8.2 0.1 2 23 496 517 495 517 0.96

2 15 0.0046 0.19 11.9 1.0 2 23 584 606 583 606 0.96

3 15 0.25 10 6.4 5.3 1 23 613 635 613 635 0.97

4 15 3.5 1.4e+02 2.8 0.9 1 23 771 793 771 793 0.83

5 15 3.6 1.4e+02 2.8 6.1 1 22 802 823 802 823 0.95

6 15 0.00035 0.014 15.4 2.4 2 23 827 849 826 849 0.96

7 15 2.8e-06 0.00011 22.0 0.0 1 23 884 906 884 906 0.97

8 15 0.00053 0.021 14.9 0.5 1 23 911 934 911 934 0.97

9 15 0.0077 0.31 11.2 0.4 1 23 939 962 939 962 0.95

10 15 0.05 2 8.6 0.0 2 23 969 991 968 991 0.90

11 15 0.00061 0.024 14.7 0.9 1 23 1010 1032 1010 1032 0.98

12 15 0.00067 0.027 14.5 0.2 1 23 1038 1060 1038 1060 0.98

13 15 0.00081 0.032 14.3 1.5 1 23 1066 1089 1066 1089 0.98

14 15 8.9e-06 0.00036 20.4 3.3 1 23 1095 1117 1095 1117 0.98

15 15 0.11 4.3 7.6 3.5 1 23 1123 1147 1123 1147 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.07	2.8	8.2	0.1	2	23	496	517	495	517	0.96
2	15	0.0046	0.19	11.9	1.0	2	23	584	606	583	606	0.96
3	15	0.25	10	6.4	5.3	1	23	613	635	613	635	0.97
4	15	3.5	1.4e+02	2.8	0.9	1	23	771	793	771	793	0.83
5	15	3.6	1.4e+02	2.8	6.1	1	22	802	823	802	823	0.95
6	15	0.00035	0.014	15.4	2.4	2	23	827	849	826	849	0.96
7	15	2.8e-06	0.00011	22.0	0.0	1	23	884	906	884	906	0.97
8	15	0.00053	0.021	14.9	0.5	1	23	911	934	911	934	0.97
9	15	0.0077	0.31	11.2	0.4	1	23	939	962	939	962	0.95
10	15	0.05	2	8.6	0.0	2	23	969	991	968	991	0.90
11	15	0.00061	0.024	14.7	0.9	1	23	1010	1032	1010	1032	0.98
12	15	0.00067	0.027	14.5	0.2	1	23	1038	1060	1038	1060	0.98
13	15	0.00081	0.032	14.3	1.5	1	23	1066	1089	1066	1089	0.98
14	15	8.9e-06	0.00036	20.4	3.3	1	23	1095	1117	1095	1117	0.98
15	15	0.11	4.3	7.6	3.5	1	23	1123	1147	1123	1147	0.95

Sequence Information

Coding Sequence: ATGGAATCAGCAACGCGATGCTCTATTTCTAACTGCAAGAGCAAAAGTAGATCAAGGAAGTTCCCAAAAGATCCAAGAAGACGTGAAAGATGGCGTTTGCTCACAGCTCCTTTCTTCAAACTCTTTTTCAATAAACGAGGTACTAGTGCTAGAATATCCACGATGAATGATTCAAGTTGCATCTGTGAAATACATTTTGAAAGAGATGGCTTTATAAATGAACACAAGCTTCCTTCCTTGAAATTGGATTCAAGATATCCAGATCGCAGGGTTTATTTCCAAAGTACCTTCGACAAAATAAGARAAACAACTGATAAAATCTTTGTGAAAATATCAAATAAGTTTCCAGATGAAAGAGAAATCAACCCTCWCTCAAAGATAAAAACTCCACTCATAGAAGGTCAAAAAGTTATTGCATGTTACGTTATCCCAGACCCAGTACGTGCCGATTTTGAAAAAGCTGCGAAAAAAGTAACTTTGCTGAGACCACTTTTGTTCAAAACGAAGCCGGATATTCCAAATAAAGTACGCCAGTGTCGAATTTGCCATAGGTATCAATGTCATGTTTTGGTTAATATACTACAAAACAAAACATTACATTCTATGGTTAAAATGGCTAACGCTATCGATGTAACCACTGAAGACCTTCTGCCCAAATTTATTTGCGCTAAATGTATCGACAACCTGGAAGCTCGTTGTTTGACAAAGAACCAGAAAATTAAAATCATTAGCAAAAATAGCAGTTTTGGTAATTATGAGATGTATATCCATCAGCAGGCTATAGAAACAGAGACTCAGGTGGTTGAAGAGCATGTAATCGAGCCACTAGATATATCTGATATCATCATTAAGGAAGAGATTGACACCGAAGAAGACATGAACAATGTAATCGCAGGCCTGAGTGGTGGTACTTCTTCATTTGTTTACGAGGAGATTCCAATAAGCTCCAATGATTTCATAGTACAAGAGGAAGTTTTTGTGAAGCAAGAGGAAGAGCTTCAACTGATTGACGAAAATATGGACGAATTTTTTAGTGGTGAAGAGTTGCAAAATATAGTGGATACATCACCTGTTCCTCCTGAAGATACAACAAAAGCTGTGCAACAACTACAACCATTGAAAAAAATTGATCGCGACCATGAATCTCCTAAACTGCTTCCAACCATAACGAGACCTTACCAAAAGCTTAAAAGTCGGCAAGTCTTAGAAGAACTTGAAGAGCTTTCAAAGCGTATTAAGTCAACAGAACTACAAGAAAACGCAAGGAAGTTTATTCTTATTAAGACAGATCTGAATTTTCTTGTCAGAAAATTGGTCAAAGTCAATCCAACACAAGATACTTCCRRGAAGAYTCCACCCAAAGTCCCYGAAAAAGTTTTAAAGAATCCACCTAACAAGATTCTACTAGGAAATCATCCTGCATTAAATTCTAAATCATTTATAAAGAGAAAGCATAAGCCACGACCGCTAGTTGACCGCAAAATCCCCTGTGAAGTCTGCCCTCAAATCATCCGTAATCACGTACTGTTTTTTGCACATATWAGAGAACATGAAAGGAACGATGATCCCTCACCATTTCAATGTCTAAAATGTTGCAAAAAGTTCTATCGATCTGACATTTTTAAAACACACAAATGTACAGTAAACAGAATTTTCTTAGGAAAAGAGCTGTGCTACATCTGTAATGAAATGGTTGCTTATTCGGGTTTTCCAACGCACTTAAGAACAGTACACAAAGATGTRAGCCTAGAATGTCTCACTTGTAAAGAAACCTGCTCATCAAGGCTTCTTTTAAATGCTCACATCAGATCAGTTCACTTTGATACAGGCCCAGAGTATCAATGTAAACATTGCTTTGAGTCCTTTCACCTTCTTGTTTCCTACCAGAARCATGAAGCTCGACATAAACAAAGATTTACCTGTGACCATTGTGGAAACATCATAAAAGAGGCCTGCAGTATTAAAAGACTGAGCTTAGAAACTGACMAATTATTACGGAAATCTTTAGAGGTTTCGGCAATAAAACAAGAGCCAGAAGTCCAACTCACAGAATTCGACAATGTAGATTTAGTTTTAAACAACGAAGAACTTTTTATAAAGGAAGAGAGTTCTGACGAGCAAAATGATTTTTCTGATGAGCCAAAGATTCCACCTGTAAAAGTCAGAAAAATTAAAAAGAAACCAGCTAATGAACCAAAAAAAAGAATAGGAAGGCAACGAATATATCCGATTGATGAAAGTAAGCAAGACCAGATATTAAAAAGATATGAAGCTAGGAAACTTCAAAGATCTCAAAACAGGGAACAGGACTATAGTTGTCTACTCTGCCCAGGAACAAACTTTCAGTTTAGAGCATACAATAAACATATGCGAGAGCATGAAATTCAGGAACACCGAAAACCCCACAAATGTGAGACATGCCATCGAGAGTATTACTTGATTTATCAGTTCAACAATCATCAGTGCACTGTCTCACAAAGATGTTATATTTGCGATACTTCGTGTAGCAGCGAAAGTTTATTAACAAAACATCTTCAAAGAGATCATAAGGATCATGATTTAGATTGTCATATTTGTCAGCTGAAGCATAAAAGTGCAAAAAGTTTACATTTCCATATAAAGTCCCATTCTACTGGTTGCGTATCTGCTTTTGTCTGTGAATTTTGTGGGAAATCGTTTCCAGGCCCTGGCAACTTAAGAAACCATCAAGCTGTGCACACCACATCAATGTACAGTTGCGATATTTGCGGCGTGAAAATAAAAAATAAATTCAACGTGTTGAGGCACATGCAATCAAGCCATTTGAATCGAAAATTTCCTTGTGACRACTGTGATGCTACTTTCGGTTTCCGTGATGCTTTAAAACTGCATAAAATTAGAAAACATGGCATGGAGGCACCAGTTAAATGTACCGAGTGTTTACTTGGATTTGTGAATAATACAGCACTGAAAATTCATGTCGATGGAGTTCATCTAAAGATTCGAAGCAAATACAATTTTTCGATTAATCAATACCGTGCTGGTGATTTTGAATGCAATATTTGTCAGCGGATCCTCACTAGCAAAATCACATTAAAGGCTCATAAAAACAAGCATTTGGGAATCCTTAATTTCAAATGTTCAATATGTGCGAAGGGATTTACCTTAAAAAGTGTACTGACTGCTCATGAAGCCACTCATAACAACGAACGTCCATTTAAGTGCCAACACTGTCCAGCCTCATTTGGTGCAAAAAGTAATATGTGGAAACACTCTAAAACCGTTCACGAAAAGGTTAAAAATCATGTTTGTGATATATGCTCCAAATCATTTTCATTTCGAACTTCTTTACAAGTGCATAGAAGAACCCATACGGGTGAAAAACCATTTAAATGCGACATCTGCGAAACTTGCTCATTTTCAGATCCATCAACTTATTATAAACATAAGAAAAACATTCATAAAATTGTTAAGCCTGTAGTGAACACTTGA
Protein Sequence: MESATRCSISNCKSKSRSRKFPKDPRRRERWRLLTAPFFKLFFNKRGTSARISTMNDSSCICEIHFERDGFINEHKLPSLKLDSRYPDRRVYFQSTFDKIRXTTDKIFVKISNKFPDEREINPXSKIKTPLIEGQKVIACYVIPDPVRADFEKAAKKVTLLRPLLFKTKPDIPNKVRQCRICHRYQCHVLVNILQNKTLHSMVKMANAIDVTTEDLLPKFICAKCIDNLEARCLTKNQKIKIISKNSSFGNYEMYIHQQAIETETQVVEEHVIEPLDISDIIIKEEIDTEEDMNNVIAGLSGGTSSFVYEEIPISSNDFIVQEEVFVKQEEELQLIDENMDEFFSGEELQNIVDTSPVPPEDTTKAVQQLQPLKKIDRDHESPKLLPTITRPYQKLKSRQVLEELEELSKRIKSTELQENARKFILIKTDLNFLVRKLVKVNPTQDTSXKXPPKVPEKVLKNPPNKILLGNHPALNSKSFIKRKHKPRPLVDRKIPCEVCPQIIRNHVLFFAHIREHERNDDPSPFQCLKCCKKFYRSDIFKTHKCTVNRIFLGKELCYICNEMVAYSGFPTHLRTVHKDVSLECLTCKETCSSRLLLNAHIRSVHFDTGPEYQCKHCFESFHLLVSYQKHEARHKQRFTCDHCGNIIKEACSIKRLSLETDXLLRKSLEVSAIKQEPEVQLTEFDNVDLVLNNEELFIKEESSDEQNDFSDEPKIPPVKVRKIKKKPANEPKKRIGRQRIYPIDESKQDQILKRYEARKLQRSQNREQDYSCLLCPGTNFQFRAYNKHMREHEIQEHRKPHKCETCHREYYLIYQFNNHQCTVSQRCYICDTSCSSESLLTKHLQRDHKDHDLDCHICQLKHKSAKSLHFHIKSHSTGCVSAFVCEFCGKSFPGPGNLRNHQAVHTTSMYSCDICGVKIKNKFNVLRHMQSSHLNRKFPCDXCDATFGFRDALKLHKIRKHGMEAPVKCTECLLGFVNNTALKIHVDGVHLKIRSKYNFSINQYRAGDFECNICQRILTSKITLKAHKNKHLGILNFKCSICAKGFTLKSVLTAHEATHNNERPFKCQHCPASFGAKSNMWKHSKTVHEKVKNHVCDICSKSFSFRTSLQVHRRTHTGEKPFKCDICETCSFSDPSTYYKHKKNIHKIVKPVVNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -