Pste002688.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold121:134945-137952[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 8.1 3.2e+02 1.7 0.4 3 17 71 85 70 86 0.82 2 9 2.7e-06 0.00011 22.1 0.9 3 23 327 347 326 347 0.98 3 9 0.47 19 5.6 0.2 1 23 353 377 353 377 0.93 4 9 2.3e-05 0.00094 19.1 0.6 5 23 386 404 385 404 0.97 5 9 0.00024 0.0097 15.9 1.1 1 23 410 432 410 432 0.96 6 9 0.0025 0.1 12.7 2.0 1 23 438 461 438 461 0.93 7 9 1.4e-05 0.00057 19.8 4.8 1 21 470 490 470 492 0.96 8 9 0.0093 0.37 10.9 0.8 6 23 502 519 499 519 0.96 9 9 2.5e-06 0.0001 22.2 2.0 3 23 527 547 526 547 0.99
Sequence Information
- Coding Sequence
- ATGTCAAAAATTGTTTTGATGCTGGATGAGTTTTTGGAAAGCAAGATGTCCATCAGCTCTTTAAGTGATTTGCATGATCTGTGTAGATTGTGTTTGGCAAAGTGTTCGATGGCTAGATTGTCCATATTTAATGAAGATCAAAGATGCAAAAAAATTGAAGATTTGACTTCTATTGCTCTGTCAGAAGATGATCGCTTCCCGATGGGAATCTGCCATGAATGTAATCATAAACTAGATTCCTACTACCAATTCAAGGAAGAATGTAAAAAAGTTCAATTTTATCTGTTCGACCTCATTAAGAATCTCCCAAGAACTTACTATCATCACCATTACCAGAATCATAATTTGGATGACGTATCTCACCATTTTTATAAAGAAATCGTTCCCGATTCTCAAATGATTGACCATGGAATGGCATATGATGATGTTCAGAATATTTATGATTCCTCAATGGAACAATCACAACATCAAACTGAATATAATCATTATGTGCCTGTACCTCAATACACCCCAAATGATGAGAATGGTTCTGAAATTTCTGGCTATAAAGATGAAGTCAATATAGACCAGTTTTTAGAAAATCATGAGCCACAAACCATTCAAGTGCAAGCTTCCGAACCACAACTCAATGAAAATAGAATTGAACAGCAAACCMAGCAAACTACAAAAATTGGTCCTATGACGCCTCCGATCGAGCAAATACCACAAAGTATAGAAATTCCTCAAATTCAAGAAATTTCACAAATTCAGCAAACTTCCCACATACCAACTGTTGAAGAAAATGCTCCTCAATACCAAGCAGTGGAGCCTGAAGAGCTAGAAGCAGAGCCAGAAGAAGAACCATTTGATTATGATGACTTTGACGAGAATTTCGAATCTGGTCCTCAAAGTGTCGAGCAATGGAATAATGTTGATGATGCTATTGAAGAAAAGATTGAGGAGTTTAGAAATAAGAAAAAGAGACCAAATCCAAAGATTTGCCCGATTTGCAATAAATTATTCAGGACACCGTTTAAGCTGAAAAGTCACATGAACACCCATACGGACACCACTAGATTCAACTGTTCCTACGAAGGCTGCATTAAATCATTTAAATCTAAGATAGGGTTGGACGATCATGAAGCAAGACATTCTGGAAACTTCAAATTTGTTTGCATATGTGGCAAGGGTTTTGCTTCACAAAGCTATTTAACCAGTCACCAAAAAACTCATACTAGTCAGAAAACCTTCCAATGCAATCAGTGTGATCAAAGTTATAAATCTAAGCAAGCTCTAGTGGACCATGAATACAGACATCTTGGAATAAAACCATTTCCCTGTCTTGAGTGCGATAAGAGCTACGTTACCAAAGGATTACTGGACAATCATTGTAAAACAAAGCATGAAGCTCCAGAGTTGATCGTCAAGTATTCTTGTGTAGAATGCTCCAAGAGTTTTACATCTAAAAGCTATTTGAGGACGCATATGAGGTGTCACAATAATAATAAGGAAATTTCTTGCTTCTGTGGGAAAAAATTCTTGCAAAATTCGGATTTAGAGCTGCACGCTAGAACACATACTGGAATAAAGGATAAGCTATGTCATCTTTGTCCTAAAGCTTTTATAAGGAAAGATACTTTGCTGAAACATTTGAGAACACACTCGAAAGAAAAACCTCACAAGAAACGCTAA
- Protein Sequence
- MSKIVLMLDEFLESKMSISSLSDLHDLCRLCLAKCSMARLSIFNEDQRCKKIEDLTSIALSEDDRFPMGICHECNHKLDSYYQFKEECKKVQFYLFDLIKNLPRTYYHHHYQNHNLDDVSHHFYKEIVPDSQMIDHGMAYDDVQNIYDSSMEQSQHQTEYNHYVPVPQYTPNDENGSEISGYKDEVNIDQFLENHEPQTIQVQASEPQLNENRIEQQTXQTTKIGPMTPPIEQIPQSIEIPQIQEISQIQQTSHIPTVEENAPQYQAVEPEELEAEPEEEPFDYDDFDENFESGPQSVEQWNNVDDAIEEKIEEFRNKKKRPNPKICPICNKLFRTPFKLKSHMNTHTDTTRFNCSYEGCIKSFKSKIGLDDHEARHSGNFKFVCICGKGFASQSYLTSHQKTHTSQKTFQCNQCDQSYKSKQALVDHEYRHLGIKPFPCLECDKSYVTKGLLDNHCKTKHEAPELIVKYSCVECSKSFTSKSYLRTHMRCHNNNKEISCFCGKKFLQNSDLELHARTHTGIKDKLCHLCPKAFIRKDTLLKHLRTHSKEKPHKKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -