Pste004134.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold111:67383-71020[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0003 0.012 15.6 1.7 1 23 355 377 355 377 0.96 2 12 0.00031 0.012 15.6 1.9 1 23 387 412 387 412 0.91 3 12 0.0013 0.053 13.6 2.5 1 23 418 441 418 441 0.96 4 12 0.086 3.4 7.9 1.0 3 23 489 509 487 509 0.93 5 12 0.0021 0.085 13.0 0.5 1 23 515 537 515 537 0.97 6 12 0.12 4.6 7.5 0.5 2 23 544 568 543 568 0.93 7 12 0.5 20 5.5 0.2 2 23 576 600 575 600 0.92 8 12 0.0002 0.0079 16.2 0.6 1 21 606 626 606 627 0.95 9 12 0.0061 0.24 11.5 0.8 2 23 634 656 633 656 0.93 10 12 0.16 6.5 7.0 0.2 2 11 662 671 661 685 0.88 11 12 0.12 4.6 7.5 2.4 1 23 691 714 691 714 0.94 12 12 5.7e-05 0.0023 17.9 0.2 2 23 720 742 719 742 0.94
Sequence Information
- Coding Sequence
- ATGTATTTAATGAATAATCCCGAACAAGACAGTCAGCTAATAACAGAAGGTGGTGTGTCTGTTTACGAACACTACCAACTTTTCACATCGATCAACTTAAAAAATCAAGACGAGCAGAAAAAATCAAAGATCTGCTATAAATGCCTTCAGAAACTAATCTTTTTTTCTAATGACCGCCGAAATGCAATTACAAACAATGAGATTATGTGCTGCTGGTCCATGAAAGAAACTGATACATTTGCTGGTCCACAAGAAGTCACTGAAATTGTGAAACTGGAATGTAATATTTATGGTCTAGATATAATCAATGATCCTTTGATTGCCACTGAAGTTAAGATTGAAGATGATATTTTTGATTTTGGAGTTGAAAGTRCGCTAATTGATGTTCTRGAAGAACCTGAAACAAATGGCTACAGCAATGACTCGGAGACAATATCAGAAAATAAAGCACATCAATCAATCGAAGCAAATGTGATCATTGTTCCAGAAGATCCTATACTACACATTGAATCCCCAGTTCAGCTGGATGCAAATGTGATCATTTTTCCAGAAGATCCTATACTACACATTGAATCCCCAGTTCAGCTGGATGCAAATGTGATCATTGTTAAAGAAGATCCTAAACTACAAATTGAATGCACAGTACAGCTGGATGCAAATTGGAACATAGTTCAAGAAGATCTAAATTTACAAATTGAATCCGCAGTTCAGCTGGATGTGCCTCAAGCAGTTTCTGGTGTAAGAACTTCCAATAGAGTTCGCCAGAAAAAAGTCATTTTTGACATGAGACTTGAACCAAATATGAGAGGGAAATATGTTTCAAAACCAAGAAACCCTCAAAACTTTTCKTTATCTGATTCAGCTTTAATTAATTCAGCTTTTACGAAAACCGGGAATAGTGATAGAATTAAGTTTAACCATGCTCTCTATGGAACTTTGGTTGAAGGATGCGAAAACTTAAAAATTGGTGATCGAAGAATTGTTTGCAATGCCTGCAGCAAAGAGTATAGTATAAAAGCTTTTCGACGCCACTATCCAAAAACACATCTCAATTTACATTTTTTTGCCTGTGATCAGTGCGACAAAAAATGTGCCACTGCATACCAGCTTAAATTGCATAAAATCATGCATTCAAGTATTTTTGGTAAAAAACTTTCTTATGTTTGCTGTTGGCCAAATTGTGGTAAAAAGTTTTCAGCGAATGGAAATTTACATTGGCATGTTCGTTCCAAGCATAAAAAATTGGGTCCTTTTGATTGTCCAATGTGTTTCAAAGAGTACAARAATAATCACTATATGAAGTGGCACCAAGAGAGGATCCATGGAATTTTCACACAAGGGAACGAGAAGAACAATATAAGGAGACGCACTAAGAAAGTCCCAAAAATAATGACAAAAGAACAGCTAGAATTAAGAAAAGCGCAAAAACTGAAACACAGGAGACACATGGAGGAAAAAATTTGTTGCTCAATTTGCGGTATTTCAGTTCAACGTTACTCATGGAAGAAACATCAAGATAAAGTACATCAAAGTAATTATCGATTTTTCTGCGATTTATGTCCTAGAAGATTCTATATCAAAAGTGGCATGATTGAGCACATGCTTCGTCATGTAGGAGAGCGATCGATTCCTTGTCCAATAGAAGGTTGCTCTAGAATGTGCTTCAGTAAAAATGATCTATACAATCACGAAAAAAGTGTTCACACAAAACGAGAAAAAAACATAAAATGTTCCTACCCTATGTGCTCGCTTTATTTCAAGTCAGTTGGAGCAATGAACAATCACATCAAATTCTTGCATACCAGAGTCCGCAAATATATTTGCCCTAACTGTCAGGAAGGTTTCTTCACACCAAAACACTTAAAAGAGCATATGACGAAATATTTGGAGAAAAATTTGATCTGTGATGGCTGTGGAAGACTTTTTAATAGTTTGAAGAAACTAAAAGAACATTTCAAACAAACTCATTTCTCTTATTCACTACATTGTTCTATTTGTGGAAAAAAATTTAAGGAAACAATGAAGGGATTATTAAAACTGCATGAGCTTGACCATCAAAATATCAGAAATCATTCATGCGTACACTGTGAAAAAAAGTTTATGACTTCTGCATTTACATTAGAACATATTCGAGCTGTTCATTTCAAATCCAAGATTAAGTGTGAATTGTGTGGAAGAAGCTTTCCTAGACCAGGATATTATAAGGTTCATGTAAAAGCGAAACATGAAGATTTAGGAGCTGAAAAAACTGAAGAATGGCTTCAAAATGGAACAGAATTGTAG
- Protein Sequence
- MYLMNNPEQDSQLITEGGVSVYEHYQLFTSINLKNQDEQKKSKICYKCLQKLIFFSNDRRNAITNNEIMCCWSMKETDTFAGPQEVTEIVKLECNIYGLDIINDPLIATEVKIEDDIFDFGVESXLIDVLEEPETNGYSNDSETISENKAHQSIEANVIIVPEDPILHIESPVQLDANVIIFPEDPILHIESPVQLDANVIIVKEDPKLQIECTVQLDANWNIVQEDLNLQIESAVQLDVPQAVSGVRTSNRVRQKKVIFDMRLEPNMRGKYVSKPRNPQNFSLSDSALINSAFTKTGNSDRIKFNHALYGTLVEGCENLKIGDRRIVCNACSKEYSIKAFRRHYPKTHLNLHFFACDQCDKKCATAYQLKLHKIMHSSIFGKKLSYVCCWPNCGKKFSANGNLHWHVRSKHKKLGPFDCPMCFKEYKNNHYMKWHQERIHGIFTQGNEKNNIRRRTKKVPKIMTKEQLELRKAQKLKHRRHMEEKICCSICGISVQRYSWKKHQDKVHQSNYRFFCDLCPRRFYIKSGMIEHMLRHVGERSIPCPIEGCSRMCFSKNDLYNHEKSVHTKREKNIKCSYPMCSLYFKSVGAMNNHIKFLHTRVRKYICPNCQEGFFTPKHLKEHMTKYLEKNLICDGCGRLFNSLKKLKEHFKQTHFSYSLHCSICGKKFKETMKGLLKLHELDHQNIRNHSCVHCEKKFMTSAFTLEHIRAVHFKSKIKCELCGRSFPRPGYYKVHVKAKHEDLGAEKTEEWLQNGTEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -