Basic Information

Insect: Parochlus steinenii
Gene Symbol: -
Assembly: None
Location: scaffold183:152100-156702[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0021 0.085 13.0 0.5 1 23 332 355 332 355 0.96

2 11 9.2e-05 0.0037 17.3 0.1 2 23 362 383 361 383 0.96

3 11 0.0014 0.056 13.5 6.0 1 23 387 409 387 409 0.97

4 11 2.8e-05 0.0011 18.9 1.1 1 23 415 438 415 438 0.96

5 11 0.035 1.4 9.1 3.1 2 19 444 461 443 463 0.94

6 11 0.96 39 4.6 3.0 1 23 582 605 582 605 0.94

7 11 0.0016 0.066 13.3 0.9 1 23 611 634 611 634 0.96

8 11 0.00081 0.033 14.3 0.1 2 23 641 662 640 662 0.95

9 11 0.0045 0.18 11.9 6.5 1 23 666 688 666 688 0.97

10 11 0.0013 0.051 13.7 0.6 1 23 694 717 694 717 0.96

11 11 0.0011 0.045 13.8 5.5 2 23 723 745 722 745 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0021	0.085	13.0	0.5	1	23	332	355	332	355	0.96
2	11	9.2e-05	0.0037	17.3	0.1	2	23	362	383	361	383	0.96
3	11	0.0014	0.056	13.5	6.0	1	23	387	409	387	409	0.97
4	11	2.8e-05	0.0011	18.9	1.1	1	23	415	438	415	438	0.96
5	11	0.035	1.4	9.1	3.1	2	19	444	461	443	463	0.94
6	11	0.96	39	4.6	3.0	1	23	582	605	582	605	0.94
7	11	0.0016	0.066	13.3	0.9	1	23	611	634	611	634	0.96
8	11	0.00081	0.033	14.3	0.1	2	23	641	662	640	662	0.95
9	11	0.0045	0.18	11.9	6.5	1	23	666	688	666	688	0.97
10	11	0.0013	0.051	13.7	0.6	1	23	694	717	694	717	0.96
11	11	0.0011	0.045	13.8	5.5	2	23	723	745	722	745	0.96

Sequence Information

Coding Sequence: ATGGAAACTTTCCCTTCCAAAATTCTGAGCGAAGTGTTGACCGTTGAGGAAATAGCAATGATTCCGCATAATTTATCTGTGAGGATCGAAAATTTTTATGGGCATTATATGACCAAAGCGAAAGATTTTATTGATACAATTTTATCGGTTCATCAAAATGATATCAACAGATTAGAGAAGGATTACGAAATACAAACGGACATAAAATTGGAGATGATAAATAAAATTCAAAGATTGGAAGCGCAACTGAATGAGAACAAGCAAACATCAGATAACAACAGAAAAATGCTTGAAGAACTATTGAGAGAAGAAGAAGAAAAGTTTGAAGATATTTTGCAATCCAACAGGACATTAAATATGCAGTTAGAACACTACATAAGATTAGAAGATCAGAAGCTTGCGATGCCTTTTATTGATTTAACTTCTTTACCCGATCCCGACGAAAGATTTACTCTAATGATGAACCAACAATTTGACCTCATGAGAGCTGATTTACAAGGGATTTATGCTTTAAATTCGAGATTACAGGCAGAAAATGAAAAGCTGAGAGAACGAGAGAATAATGTTCAAGATTTGAAGGCTCACAATCATGGATTTCAAGAAAAGATATCAGCATACCAGAACAAAGATGCTTTAAATGAAGCCTCCATCAAAGATCTAACGGAGGAAACTTGCTCAGCTAAAGATCCGCTTATCAGTTCCAAAACTCAAATCGAAGAGTTCAAAGATGAACAAAAGAAACTTCAATATCGAATCAAAAAGTTGGAAAATGATCTAAAGATGTCTGAAAATCAAAAAAAATTCCAAAGCAATTCCAAATCAATTGAACCATTTGATGATCGAGAAGATCCATTAAAGGATTTGTTAGTAATTAACGCCGAAAATTCACAAATAAAAGTTAAAACAAGTTCTAGTAAGAGGCGACCTGTGGATCCTGAGAATAAGACTCATGTATCGATTCATATCAACGCAGTTCATTTGAAGTTAAAACCTTATAAATGTTCAGAATGTCAATTAATTTTTTCTAGGAAGCTTATCCTGGAACGTCATCTCAAATTAATTCATTTTGGAAAACATCACTTAATTTGTGATGTTTGTGGAATTCGCTTTGGAAGAAAGGAACAGATGGAAAAGCATTTGATGTCACATTTTTCAACTCATGAATGTGGTGAATGTCACAAGAAGTTTAAATATGCTAAATATTTAATGAATCACAAGAAACTTCATTTAACTATTTTAGACTTTTCTTGTGATATTTGCGATTCGTCATTCAAGACCAAAAAGAAACTCAATGTACACATTATCTCCAAACATTTCAACCCAAAGTTGAGCTGTGAGAAATGTTTCAAGAAGTTCACTTTCAAAAAAAATTACAAGGAACACAATAGCGAAGATCCTCTCAACACCGATGGAGACGCCTACACAAGGAACCTGCTTGCCTTTAGGATCAAACATGCCCACAAGATTATCATAGCGTCCACCACCTGCCACAGATCCAACAGTTTCTTGCTCTTTCTTCTTGCTAGTAGGATCTCCTTTCATCACCGCTTCATAAATCACACCAGTGTAGTAATCCAAACCTCTAGCCAAACTCAAGTCAAAGAGCACTTGATGTCCCACTTTGAAGAGATTACAATATTTCAGGAGCATAAGAGGCGACCTGTGGATCCTGAGGTTGTTAATGATGACATCGAAACTGATAGCCAAGCTGAGAATCCAGTTTCTGTTAAAATTGGAAAAATGCATCATTGCAATGTTTGTGTTTTTAAATCGAAGAATAAGACTGATGTCTCGAAACATATCAACGCAGTTCATTTGAAGTTAAAACCTTATAAATGTTCAGAGTGTCAATTAAGATTTTCTACGAAGCTTATCCTGGAACGTCATCTCAAATTAATTCATTTTGGAAAGCATCACTTAATTTGTGATGTTTGTGGAATTCGCTTTGGAAGCAAGGAACAGATGGAGAAGCATTTGGTGTCACATTTTTCAACTCATGAATGTGGTCAATGTCACAAGAAGTTTAAAAATGCTAAATTTTTAATGAATCACAAGAAACTTCATTTGACTATTTTTGACTTTTCTTGTGATATTTGCGATTCATCATTCAAGACCAAAAAGATACTCAATGTACACATTATTTCCAAACATTTCAACCCAAAGTTGAGCTGTGAGAAATGTTTCAAGAAGTTCACTTTCAAAGGACATTACAAGAGACACGTAAAGAAAGAACACAACAATCTCAAGAAGAAAGAATTCGATGCTGTAATCAAGAAAATTGATTTATTGATGCCAAATCATGAGCTCCTGAAATATGTTTAG
Protein Sequence: METFPSKILSEVLTVEEIAMIPHNLSVRIENFYGHYMTKAKDFIDTILSVHQNDINRLEKDYEIQTDIKLEMINKIQRLEAQLNENKQTSDNNRKMLEELLREEEEKFEDILQSNRTLNMQLEHYIRLEDQKLAMPFIDLTSLPDPDERFTLMMNQQFDLMRADLQGIYALNSRLQAENEKLRERENNVQDLKAHNHGFQEKISAYQNKDALNEASIKDLTEETCSAKDPLISSKTQIEEFKDEQKKLQYRIKKLENDLKMSENQKKFQSNSKSIEPFDDREDPLKDLLVINAENSQIKVKTSSSKRRPVDPENKTHVSIHINAVHLKLKPYKCSECQLIFSRKLILERHLKLIHFGKHHLICDVCGIRFGRKEQMEKHLMSHFSTHECGECHKKFKYAKYLMNHKKLHLTILDFSCDICDSSFKTKKKLNVHIISKHFNPKLSCEKCFKKFTFKKNYKEHNSEDPLNTDGDAYTRNLLAFRIKHAHKIIIASTTCHRSNSFLLFLLASRISFHHRFINHTSVVIQTSSQTQVKEHLMSHFEEITIFQEHKRRPVDPEVVNDDIETDSQAENPVSVKIGKMHHCNVCVFKSKNKTDVSKHINAVHLKLKPYKCSECQLRFSTKLILERHLKLIHFGKHHLICDVCGIRFGSKEQMEKHLVSHFSTHECGQCHKKFKNAKFLMNHKKLHLTIFDFSCDICDSSFKTKKILNVHIISKHFNPKLSCEKCFKKFTFKGHYKRHVKKEHNNLKKKEFDAVIKKIDLLMPNHELLKYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -