Basic Information

Insect: Parochlus steinenii
Gene Symbol: -
Assembly: None
Location: scaffold43:341571-343682[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00026 0.011 15.8 4.3 1 23 105 128 105 128 0.95

2 13 0.00047 0.019 15.0 0.4 2 20 135 153 134 155 0.94

3 13 0.00021 0.0084 16.1 1.1 1 23 163 185 163 185 0.97

4 13 0.57 23 5.3 3.7 2 23 192 213 192 213 0.93

5 13 2.7e-05 0.0011 19.0 1.2 1 23 219 241 219 241 0.97

6 13 3.4e-05 0.0014 18.6 0.6 2 22 247 267 246 267 0.96

7 13 0.0069 0.28 11.4 1.1 1 23 296 321 296 321 0.94

8 13 7.6 3e+02 1.8 0.3 3 23 332 352 331 352 0.87

9 13 7.8e-06 0.00031 20.6 1.5 1 23 356 378 356 378 0.96

10 13 0.00022 0.0088 16.1 1.9 3 23 389 410 387 410 0.97

11 13 0.0052 0.21 11.7 0.8 3 23 417 438 415 438 0.96

12 13 0.11 4.4 7.6 1.7 1 23 444 467 444 467 0.94

13 13 0.0086 0.35 11.0 0.8 3 23 475 496 473 496 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00026	0.011	15.8	4.3	1	23	105	128	105	128	0.95
2	13	0.00047	0.019	15.0	0.4	2	20	135	153	134	155	0.94
3	13	0.00021	0.0084	16.1	1.1	1	23	163	185	163	185	0.97
4	13	0.57	23	5.3	3.7	2	23	192	213	192	213	0.93
5	13	2.7e-05	0.0011	19.0	1.2	1	23	219	241	219	241	0.97
6	13	3.4e-05	0.0014	18.6	0.6	2	22	247	267	246	267	0.96
7	13	0.0069	0.28	11.4	1.1	1	23	296	321	296	321	0.94
8	13	7.6	3e+02	1.8	0.3	3	23	332	352	331	352	0.87
9	13	7.8e-06	0.00031	20.6	1.5	1	23	356	378	356	378	0.96
10	13	0.00022	0.0088	16.1	1.9	3	23	389	410	387	410	0.97
11	13	0.0052	0.21	11.7	0.8	3	23	417	438	415	438	0.96
12	13	0.11	4.4	7.6	1.7	1	23	444	467	444	467	0.94
13	13	0.0086	0.35	11.0	0.8	3	23	475	496	473	496	0.92

Sequence Information

Coding Sequence: TTGAAYACTGAACTAAAAGATATGCTGCAGGACGACGAAGATGAATCTGATGAAGAAATGGAAGTGCAGACTCGAGATGTAGCTGTAGATACAGCAGATATGTCAGCTGAAGTCGATCCAGCTGATTATTTGAAGGTTGAAGTGCAAAGTGACGAAGATGAGGAAATGATGGAGGTTCCTGCGGAAAAACCAATGAATTTTGTATTTTGTGGTGTCAAAGAAGAGGTGGCCGTTGCTTTGATTCCTCCAAAATCTCCCAGTCCAGAGCCTTCTCAACCTRRAATTCGTCTTCCAGCCAACAAGCAAGTAATTTTTTCTTGTGAGCAGTGCGAGAAACGCTTCCAATCTCAGTCTCAGCTGCGCTACCATCAACTCCACACTCATCCTCTAAAGCAACCTGACAAATGCACAACCTGCGATGAAACTTTCTACGATAAACGTCTCTTACAGCAACATAAAATACTTTGCTCTCCAAAACCAATCGAATTTTTCTGCGAATATTGTGCCAAGAGCTTTAAAAGTCTGTATGTGCTTCAAGATCATTTACTAAGGCATCAACCGGATAAAAAGGAAAAATGTACGCAGTGCAATAAATGCTTTCTGCCTGGAAATGATATGAATAAGCATGTGAAACGTCATTTGAACTTGAGAGAGCATAAATGCAATCTTTGCTCGAGAACTTTTACTCAAGCTGTTGCTTTGAGGGATCATCTGGAATCTCATTCGGAKATCAAAGTCAGGTGTCCAAAATGTAATAAAGCTTTCGCTACCACTTTYAACATGAAGAATCACCTGAGAACAAGATGCGATGGAGTTTTTAAAAACGATTCTGACATCCCTGAACCTACACCGAGGAAAATTACATTTTTGCACCACAAGTACACCTACAGTTGTTTTGTTGAGACATGCGAGAGAAAGTTTTCATTGAAAAAGCTGTTAAAAGAACATTTATTGAAGGAGCACAACGTCGAGATTCCAAACTTTGAGAGATTTTGTTTGGAGTGTAAACAGGAATTTGAGTCTGACAATATTTACTATGCTCACGTTAAAACACATTTATGCATTCACACTTGTAAATTATGTGGAAAAGGATTTAGGACTGAGGAAACTTTGCAGAGACATGAAGCATCGCATGCTACTAGTATGGCTGATCGACCATTTGGGTGTGATCAATGCGACCTAAAATTCAAAACTGATTCGAATCTACGAAGCCACAAACAAACAAAACACACAAAGCGTCAATTTGGCTGCAAGATCTGTGGTCAACGCTTCGTATTCTGTCGTCAAGTGGAGAATCATGTGAAYGTCGTACACTCCAATCATGCAATCTACAACTGTAATATCTGCAACGAYCAGTTTAAATATATTCGTGCTTATAAAAGCCACATGTACTTGAGACATGACATCAAAGAAGTTTATGGCTGCGATAAATGCGAGGCGAAYTTTACTCAAGCAAATGAGCTAAGAGCTCATAAACATGAAAATCATGGAGAAACTTATCATGGAAAYAAGAAGGAGACTTTGACTAGTYCGGAGGAAAATTATGTGGTTCAAGAAAATGTCGAGATTCAGCAGTATGATATTATTCCTTATCAAGAAAATTGA
Protein Sequence: LNTELKDMLQDDEDESDEEMEVQTRDVAVDTADMSAEVDPADYLKVEVQSDEDEEMMEVPAEKPMNFVFCGVKEEVAVALIPPKSPSPEPSQPXIRLPANKQVIFSCEQCEKRFQSQSQLRYHQLHTHPLKQPDKCTTCDETFYDKRLLQQHKILCSPKPIEFFCEYCAKSFKSLYVLQDHLLRHQPDKKEKCTQCNKCFLPGNDMNKHVKRHLNLREHKCNLCSRTFTQAVALRDHLESHSXIKVRCPKCNKAFATTFNMKNHLRTRCDGVFKNDSDIPEPTPRKITFLHHKYTYSCFVETCERKFSLKKLLKEHLLKEHNVEIPNFERFCLECKQEFESDNIYYAHVKTHLCIHTCKLCGKGFRTEETLQRHEASHATSMADRPFGCDQCDLKFKTDSNLRSHKQTKHTKRQFGCKICGQRFVFCRQVENHVNVVHSNHAIYNCNICNDQFKYIRAYKSHMYLRHDIKEVYGCDKCEANFTQANELRAHKHENHGETYHGNKKETLTSXEENYVVQENVEIQQYDIIPYQEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -