Pste012616.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold360:37998-41405[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.13 5.2 7.3 0.6 1 23 22 45 22 45 0.91 2 21 2.3 92 3.4 4.3 3 23 50 71 49 72 0.95 3 21 0.017 0.69 10.1 0.1 2 20 77 95 76 97 0.93 4 21 0.1 4.1 7.7 2.9 1 23 115 137 115 137 0.97 5 21 0.35 14 6.0 3.0 1 23 317 340 317 340 0.94 6 21 0.99 39 4.6 0.6 1 23 355 379 355 379 0.79 7 21 0.00037 0.015 15.4 0.7 2 23 420 442 419 442 0.95 8 21 1.1 45 4.4 1.6 9 23 447 462 445 462 0.90 9 21 0.0001 0.0042 17.1 1.0 1 23 473 496 473 496 0.93 10 21 0.0071 0.28 11.3 0.0 2 23 529 551 528 551 0.95 11 21 0.8 32 4.9 1.0 2 23 558 580 557 580 0.92 12 21 0.0032 0.13 12.4 0.9 3 23 588 609 587 609 0.94 13 21 0.00042 0.017 15.2 1.9 3 23 647 668 645 669 0.94 14 21 0.00029 0.011 15.7 0.1 2 23 675 697 674 697 0.95 15 21 1.3 53 4.2 0.2 2 23 706 727 706 727 0.94 16 21 0.051 2 8.6 1.3 1 23 731 753 731 753 0.95 17 21 0.00069 0.028 14.5 1.0 2 23 764 785 763 785 0.96 18 21 7.6e-06 0.00031 20.7 2.1 1 23 791 813 791 813 0.98 19 21 0.00018 0.007 16.4 0.1 2 23 818 839 817 839 0.97 20 21 3.8e-05 0.0015 18.5 2.5 1 23 845 867 845 867 0.99 21 21 0.0027 0.11 12.6 2.1 1 23 873 896 873 896 0.97
Sequence Information
- Coding Sequence
- ATGTTCCATCGTACTAAAGGTTTGGAAGAACATGTTAGAGCAAAACATGAAGGAAAAAAAGATTTCTTTTGTGAATACTGTAACCTTGCATTCGCTTGGGAAAAAAGCTTAGAAAGACACAATAATCAAAATCATCTTCAAAACAGCTGTGATGAATGCATTGAAACTTATTTCACTTGTAAGGATCTTATCGACCATCAAAAAAAGAAACATCATTCAACTCCAATTTATTGTTCAAAATGTGGTCTGGAATTCCCCAAAATTGATTTGTTACAAAAACACACGACAAACATGGAAAATATTGGAGTTTGTTTTCACATGCAGGCGATGATGAAACCTAAATTTGTTTGTGATTCCTGTAATGAAGACTTTTCTTGTAAGAACAAGCTAGAAAAACATTTGAAGGATCACAGGAGAGATGGCAGAGCAAAAGTCGAGCAAGTATTTGTTAACGGAGTTGATAGGAAACAATTGGAAATTGTTACTATTGGAGATAGACCAACAAAAAAAAGACAAATCAAATCAGATTTAACAAAGAAGGAGCCATTATTACTAGAAGATGAGATAAAGGAAGATCCAGATCAAGAATTTGTAGCAATCCCTGATTTTCCTGCTGATTTGGATATTTTATCGTTCGTTAGTATGGAGCCAGAAGTTGTAGTTAAAGAAGAGCCGGAAATTTTTGAAATTAATAATGAAGTTGAAAATGATGACAATTATAATTATTTTGAGGATTCCTTGAAAGATTCAAGCTCAGTAAACTCTGACGAAGATTATGATCCCAAAAATGATGATTATAAGCCACTTTCTGGTTCTTCTAAAAAACTGAAAGAAATCGCAGATCATGAAGCTTTGAAAATCACAACTAAAATTTCAAAAAAATCCAAGAAACAAAAGAAAGAAAAGCTTATAAAAGATGAACCAGAAAATTTTAATAAACGACGAACTTACGAGTGTGAATTCTGCAAACAAGTTTTTCTACACGAACGTAGTTTACTACACCATTTAGCGTTAAAACATCGAGCTAATGGTGCTCTTCCTCCGAAACCATTGAAAAAACCTCATGTTTGTCCAATTTGTAATGTTGTGCGATCTCATTCTAAAGCTAATATTAGGAGGCATATTGAGAGTGTGCACGAGAAAAAAAGAGGATATCATTGCAAAACTTGTAAATTATCATTTGGATGGGAGAGAAGTTTGAGGAATCATAACGAGCATTTTCACGCTAAAGTTGGACAACCAGGTGAAAGAATTTTAGAATGTGAGGATTGTGATTTAAGCTTCGAGACTCCACAAAGACTAAGCCATCATCAGCGAGCTTTTCACAATATTCCTGTCTCTTATACACATCTAGATAATCTTCAAAGACACCATCAACAAAAACATTCAGAGATTCCGGAGAGTGAGATGAAAATTTTTAAATGCCAGCACTGTGAGATGACTTTCCCAACCAATGATGCTATGATTAGGCATATGGTTGAAAAACATGATCATGAGAAAAAGTTTAACTGTGAAATTTGCCAGAGCTGGTTTGGCTGGAAAACTGGTCTCACGCGCCACCATCGTGCTAATCACGCCCCAAGTCCTTGCAGTGTTTGCCCAGAAATATTTGTAGGCCAAAAACTTTTATCAGAGCATATGGCTTCCGTTCACGAATGTAATCTTGACTTAGAATGTCAATTGTGTGAAATAAAATGCTCAACTTTTGTGGCCATGCAACGACACAATTTATCCGATCATCCTAGCAGTAAAAGAGCTTTTTGTGAGAAATGCACGGAAATATTTTCTTCGAGAGATAAACTTAAATCACACGCTAGTATAACTCATGGACAGAACCTGAAAAATGATTGTTTGATGTGCCAGGATTCTTTTCATTGTAAAACCACTTTGGATGAACATCACCAAAAAGTTCATGATTTTCAGCAGAGAGACTGGGCATGTCATCAATGTGATAGGGCTTATAGAAGACGACCTGACCTCCTAGTTCATCAAAGAGATCGTCACCACCGTACAAAAGACGTTAAATGCGAAATTTGCGGAGAGTTATTTATGCGACGAGCTCAGTTACAAAGACACTCTCAAGTTGTMCATGATTTTGGCAAAAAATTAACAAGAACCTGTGGCGTCTGCTCTTATACATGCACTCTAGCCAATGATTTTGCTGGACACATTGCTCTTCATCCAGATCATTTTATTTGCTTCATTTGTGGAAGTAATTTTGATAAAGAAATTCAACTTAAGCATCACAATATTTCTCACCGAAAAATAGATGATACATTGAAAAAAATTGTTTGTGATCTTTGTGGATTAAAATACACTTCTCGAAGCTGCTTATTAGTTCATCTCAAGCAGCATACTTCTGAAAAATGCTATACATGTGATGAATGTGGCAAGAGTTATAAATTTCCTTCCGCATTACATGTTCATCGAAAATACCATCAAAAACAGTTGGAATGTCCTTATTGTAAACAGCTTTTTGCTACAAAGTCAGTGTTGGAGACTCATATTAACATTCATGAAGGAAAGAAACCATACAGCTGTGACCAATGTGATTATAGGTGTAACCAACCTGGTTCATTAAAAATTCATCAAAGGAAACATACAGGAGAAAAGTTATACAAATGCAATCGATGTCCACAAGAATACGCTTTTCATAAATCACTGAAGGCTCATTTGCTCAAAGAACATGGCATACATATTGAAAATGTTGGTCGCGGAAATAGATTGATGTCCAATCTACCAGCTAATTGA
- Protein Sequence
- MFHRTKGLEEHVRAKHEGKKDFFCEYCNLAFAWEKSLERHNNQNHLQNSCDECIETYFTCKDLIDHQKKKHHSTPIYCSKCGLEFPKIDLLQKHTTNMENIGVCFHMQAMMKPKFVCDSCNEDFSCKNKLEKHLKDHRRDGRAKVEQVFVNGVDRKQLEIVTIGDRPTKKRQIKSDLTKKEPLLLEDEIKEDPDQEFVAIPDFPADLDILSFVSMEPEVVVKEEPEIFEINNEVENDDNYNYFEDSLKDSSSVNSDEDYDPKNDDYKPLSGSSKKLKEIADHEALKITTKISKKSKKQKKEKLIKDEPENFNKRRTYECEFCKQVFLHERSLLHHLALKHRANGALPPKPLKKPHVCPICNVVRSHSKANIRRHIESVHEKKRGYHCKTCKLSFGWERSLRNHNEHFHAKVGQPGERILECEDCDLSFETPQRLSHHQRAFHNIPVSYTHLDNLQRHHQQKHSEIPESEMKIFKCQHCEMTFPTNDAMIRHMVEKHDHEKKFNCEICQSWFGWKTGLTRHHRANHAPSPCSVCPEIFVGQKLLSEHMASVHECNLDLECQLCEIKCSTFVAMQRHNLSDHPSSKRAFCEKCTEIFSSRDKLKSHASITHGQNLKNDCLMCQDSFHCKTTLDEHHQKVHDFQQRDWACHQCDRAYRRRPDLLVHQRDRHHRTKDVKCEICGELFMRRAQLQRHSQVVHDFGKKLTRTCGVCSYTCTLANDFAGHIALHPDHFICFICGSNFDKEIQLKHHNISHRKIDDTLKKIVCDLCGLKYTSRSCLLVHLKQHTSEKCYTCDECGKSYKFPSALHVHRKYHQKQLECPYCKQLFATKSVLETHINIHEGKKPYSCDQCDYRCNQPGSLKIHQRKHTGEKLYKCNRCPQEYAFHKSLKAHLLKEHGIHIENVGRGNRLMSNLPAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -