Pste001497.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold138:162004-165635[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0018 0.07 13.2 0.2 1 21 12 32 12 33 0.95 2 15 0.13 5 7.4 1.7 2 23 183 205 182 205 0.92 3 15 0.00086 0.035 14.2 0.4 1 23 246 269 246 269 0.97 4 15 0.00041 0.017 15.2 1.9 2 23 274 296 273 296 0.96 5 15 0.00025 0.0099 15.9 0.8 1 23 322 346 322 346 0.92 6 15 0.16 6.3 7.1 0.6 1 23 352 374 352 374 0.95 7 15 7.3e-05 0.0029 17.6 1.6 2 23 381 403 380 403 0.96 8 15 0.00022 0.0089 16.1 2.6 2 23 419 440 418 440 0.97 9 15 0.081 3.2 8.0 0.9 2 19 462 479 461 484 0.93 10 15 4e-05 0.0016 18.4 4.7 2 23 491 512 490 512 0.96 11 15 3.7 1.5e+02 2.8 2.1 2 23 529 551 528 551 0.92 12 15 2.1e-05 0.00082 19.3 4.3 1 23 558 580 558 580 0.98 13 15 0.46 18 5.6 1.2 3 23 754 772 753 772 0.78 14 15 0.0035 0.14 12.3 0.5 1 20 778 797 778 799 0.91 15 15 4.5e-06 0.00018 21.4 0.5 2 21 829 848 828 849 0.94
Sequence Information
- Coding Sequence
- ATGTACGCACATGGAATCAATCAATTGATAGAGTATCAGTGTGATCTCTGTGGTGCAATATTTCATCGAAAAATTCTACTGGCCAAGCATCTATCGTCTCGCATTTTGAATAAAACGAAGGAATTACTCCGTAAAATAAGTGTACAAGCAGAAATTGCTTTGCTCCTTGAAAAAGCTGATCTGGGCCGTATAAAAACTAAAAATACTGAAACTAAAATGTTGACTGATGCACCTGTAGTATTTTTGAATGCGTCTGAAACTCATATAGTCATCAAAAGTTTAACCGAAACTGAAACATTTTTGATCACTGAAATTAAAGAGGAATCTCTAATGATACCAACAGATATGATCAAAATCAAAGATGAATTTGTTGAAGAAGAGTACCAATTACAAGAGTCAACATTTCCTGTCTGTTTAAAAGAAGAGGTTTCGGTCGATGATTCACAAGACTATCAGAATTTTAAGAACACATTTGTGATCAAAGCTGAAGATACTTTTAAGGATTGCCCAGAGGAACTTATAATAAAAGTTACACATAAGCAGTTAGTTTGCAATATCTGTTTTCAAAATTGCAACCTTCCAAAAGATTTAAAAACTCACATCTTATTCAAACATAATGTGAAAATGACATTTGACTGTGACAAATGCGAATTTATCTCCGGTACTAGAATGGGTCTTTTTTATCATAACGTTAAGCACAAATCTACGATAATAGAGCCACAAAAAGTCTGGAGGTATCCATGTCTCTTTTGTAATAAAGGATTTATGTATTCTGGACAAGTCAAAGAGCATATGCGTAATATTCATGGAGGAAGTCTCAAGTGTACTCTGTGTTCAAAAATGTTTGATTTAAAATCAAAACTAACTACACATCTGCAAAAAGAACATCCTAGAAAAAAAAAACTTCGTAAATTTGACCTTGCATTTAAGTACCACCTAAACAAGCACTCGGATGTGAGGAACTTTAATTGTAATGAGGTAGCGTGTAACAAAAGTTTTAAAACCAGAAGTGATCTCTATCAACACTACGAAATTCACGACAAAAACAAAGAGTTCAAATGTGAAGAGTGCAGTGAGGTGATACTAAAGAGAAGTACATATGAGTGGCATCTTAAAAAACATCAACCAGAAAAAGACAAGACTTGCAAAGAATGTAACCGAGAATTCAAAAAACCCGAGAACTATCGTATGCACTTAAGAAATGTACATTTAAAGCTATCCCGGTCATCTAAACCTAAAAGATCGCCAACAATATCTTGTGAATTATGCAGCAAGACATTTTCCGGCAAATTCCACTTATTGCAACACTTAAAAAGTCATGAGAAAAAACAAGAGCGTAGATTAGAAGATTTAGAACATGGTGAATTACCTGATGCAAGTAAAACTTGCTTCCAGTGTAACTTAGAGTTTAAAAATGCTGCAACCTTTGAAAGACATGACTTGGTAAAGCACAAAAAAGATCCTGATCTGACTTGCCAGCAATGCCAAAAATCATTCACCAGGAAGTTCCATTTGTTGAAACATTTGGAAAGCCATGTTAGAAAATCGAAGATATCAAATGATAATAGTTATGGCTCAACTATCACGTGTACTGTGTGCTTTCTTGAATTTATTGATACGTGTAGCTTTGAACTTCACAAATTTAAGGATCATCCACAAGCAAATGTTGAATTTACTTGTGATTACTGTAATAAAGTGTTTCGTCGACATTACGATATTAAAAGACATTTGCAACTGCACCTGAGACTGAAAGATCAACAGCTAGTTCAAGAAAATAATATCATTAAAACTGAAACGGTGAAAATCAAAGATCACAATTTGAAGACTCCAAAACTCCCCGAAATTGTCTTTGTAAAAAGAAATCCTGAAGAGACTGAAAATTTTCTAATTACTGACATAAAAGAAGAAAAAAATCCATTGATGATTGGAGAAATTGATTTAGAGATTAAGGAAGAGCTGGAGGAAGAAGATTTTGACAATATAACTACAAATACCAAAACGTACCATCATTCGGGTGCATTATTACTTGATAATGAATTAGAACACATTTATAAACCTATTGTAAGGCAGAAAGATGATCAGAATCAAACAAAAACCCAAGAGTATGATTATAACGAATCTAAAGTCCATCTGAACAAGCTAATTCAAAAAACTGTAGAATCCGATTCCCCGAGTGACTTATTTCCGTTAAAAATACCTAAAGTATTGAAAGTTACCAACAGCTTTAATAAGGAACTCAAAGAAAGAAAATCAGACTGGTGTTCGATCTGCTCCAGGAAATTTAGTAACCTTTCAATGCACAAACGACGAATACATAGTACGGCACGTGATCATATTTGTGCTTTGTGTGGCAAAGCTTTTCTCAGCCAATCAGAGCTTAAAAAGCATTCTAATAAAGTAAGAGATTGTAGAATAGACAACAGACTCGAAAAATGGTTCAATATTGTTAAGCCAGTGCATTTGACTCTAGATCCTCTGGAAGTCGAATGCCAAGAATGCAAAAGAAAATTTTCAAATAATGATTCTTTGAAGAGACACATGAACGTGAAGCTCACATCTGCAAATTGTGTGGTAAAAGTCTTCCTGATCAATTTAAACTTGAAGATCATCAAGTGCTACATAGAAAAGTTGATGATAAGTCAAAAAAAATCTGTTGTGATCATTGCCCGTTACGCTTCACAATCAAAGGACACCTAA
- Protein Sequence
- MYAHGINQLIEYQCDLCGAIFHRKILLAKHLSSRILNKTKELLRKISVQAEIALLLEKADLGRIKTKNTETKMLTDAPVVFLNASETHIVIKSLTETETFLITEIKEESLMIPTDMIKIKDEFVEEEYQLQESTFPVCLKEEVSVDDSQDYQNFKNTFVIKAEDTFKDCPEELIIKVTHKQLVCNICFQNCNLPKDLKTHILFKHNVKMTFDCDKCEFISGTRMGLFYHNVKHKSTIIEPQKVWRYPCLFCNKGFMYSGQVKEHMRNIHGGSLKCTLCSKMFDLKSKLTTHLQKEHPRKKKLRKFDLAFKYHLNKHSDVRNFNCNEVACNKSFKTRSDLYQHYEIHDKNKEFKCEECSEVILKRSTYEWHLKKHQPEKDKTCKECNREFKKPENYRMHLRNVHLKLSRSSKPKRSPTISCELCSKTFSGKFHLLQHLKSHEKKQERRLEDLEHGELPDASKTCFQCNLEFKNAATFERHDLVKHKKDPDLTCQQCQKSFTRKFHLLKHLESHVRKSKISNDNSYGSTITCTVCFLEFIDTCSFELHKFKDHPQANVEFTCDYCNKVFRRHYDIKRHLQLHLRLKDQQLVQENNIIKTETVKIKDHNLKTPKLPEIVFVKRNPEETENFLITDIKEEKNPLMIGEIDLEIKEELEEEDFDNITTNTKTYHHSGALLLDNELEHIYKPIVRQKDDQNQTKTQEYDYNESKVHLNKLIQKTVESDSPSDLFPLKIPKVLKVTNSFNKELKERKSDWCSICSRKFSNLSMHKRRIHSTARDHICALCGKAFLSQSELKKHSNKVRDCRIDNRLEKWFNIVKPVHLTLDPLEVECQECKRKFSNNDSLKRHMNVKLTSANCVVKVFLINLNLKIIKCYIEKLMISQKKSVVIIARYASQSKDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -