Pste010730.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- zfh1
- Assembly
- None
- Location
- scaffold149:140814-143507[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5e-05 0.00062 19.7 1.2 1 23 357 379 357 379 0.98 2 13 0.019 0.75 10.0 0.9 2 23 386 408 385 408 0.92 3 13 1.2e-05 0.00047 20.1 2.1 3 23 415 435 414 435 0.98 4 13 5.8e-06 0.00023 21.0 1.4 1 23 441 465 441 465 0.98 5 13 2.7e-07 1.1e-05 25.2 2.3 1 23 471 493 471 493 0.99 6 13 0.0066 0.26 11.4 0.3 1 21 498 518 498 519 0.95 7 13 0.0076 0.31 11.2 0.2 1 23 545 570 545 570 0.92 8 13 0.052 2.1 8.6 0.8 2 23 578 599 577 599 0.95 9 13 0.00098 0.039 14.0 3.2 1 23 603 626 603 626 0.97 10 13 0.047 1.9 8.7 1.1 1 23 636 659 636 659 0.93 11 13 2.3e-05 0.0009 19.2 5.6 1 23 665 687 665 687 0.98 12 13 0.024 0.96 9.7 1.0 1 23 692 715 692 715 0.96 13 13 0.0072 0.29 11.3 1.3 1 20 721 740 721 742 0.95
Sequence Information
- Coding Sequence
- ATGCCAGCTTACTGCAGTGTTGCTGACTGTATGAGCAACTCAAAAACATCCAAGAATCAAGGCATACAGTTCCACCGACTACCTAAATCAGCAGAACACGCAAAGAAATGGATTAAATTTTGCTCAAAATCTGTAATCTCTATAAATGGATTTGTTTGCTCAAGACATTTTCGAGATGAAGACTACGATGTGATTAGAATTGCTCTCACTGAAGATGCTAGACCGAAACGTATTTTAAAAAAGAATGTGGTTCCAACTATTCGATCCAACTACGATAATTTCGACGAAGTCCAACTAATCGAGATTGAAGTGGATGAAGTAGAGGTAGAAAAAGAATTATTTCCCAAAAGTGATCCAGATGAATATCAAGTTGAATATCTTGAGAATGAGGAAGAGGTATTAGTGGAGGAAGAACAACCAGTTCCTCTCGAGACTGAACCAACTCCTGAAGTTAGCGCCTATCTCTTAAGAGAACTTAATAATGCTAAAAACGAAATTGTCCTTTTACGAGATCGAGTGAGTGGATTACAAAGTTCGCTCAACGATAAAGATCAAAAAATGGCAATAATTCTAGAAAATATTAAAGATATTCGTACTGAGATAAAATGTAAAGATTGTAAAAACTGCACCCACTCAAATATAATTGTTGATCCAGAGGATCCAGGGGAAGAGCTAGAATACGAAGTAGAATATTTGGAAGATCAGCAATCGAAGTATGAATCAAATGATCTGGAAGATGATTATTTTGAAATTGAAGAGGTTGAAGATAATTCATCAGTTCAGGATTATATACCACCTGTAATTCCAAGTTTCTCGCAATTGGAAAATCCAAAAATTGATGACATTGCTCGCATGATTGATGAAATTGAAAAACGTAACGAGGAGTTGATAAATCCAAAAACCAAGGAAAAAACTAAGATTTGGCAGAAAGAAACGATTGTCGTGCAAGATTCACAAATTCAGAAAATAACAACTCCTCTAGTAAATGCAGAAGCAATTAAACCAAGATTGATATTATGTCCAGCTAGAGATGAAGATTCTGATCCATTTGTTGAATACAAAATTGAATATCGTTGTGGAGATTGCGGAAAAACTTTCGAAAATGCGAATCGCTTTAATAAACATAAAAACATTCATCCTCAACCTAATGGTATTCAGTGTCCTATCTGTCCTAGTGTTTTTCAATTCCTCACTCATTATCAGAGACACTTCAAAGACGTCCACATTATGGATCCTAAAGCTTGCAAGGAATGCTCAAAAGTCTTTAAAAACAAGAAGAGGCTGAATATTCATATGCGACAACATGAATTGGTTAAAAGGTATCAATGCACRATTGAAGGATGTGATAAAGGWTTCAATTCAAGAACTCATCTTAAAAATCATTTRAATGTYCATACTGGTAATCGACCTTACTCCTGCAATCAATGCGATAAAACGTTCAAACAAAGCTACGCACTTACATTACATCTTCGTCGGCATGCAAATATTGTTTACTCTTGTGAAAATTGCTCTCAAACTTTTGGATCTTCTTCTGGTCGTAGAAGACACGCTCGTATTTGTGATGGTAGAAAGTCCAGAGGAAAGTATCGAGATAGAAATGAAAAGTCTTACAAGCCGAAAATTGAATATACATTTGAATGCTTTGTGCCAGAATGTCAGCTTAAATTCAGCTCCAAGGAAGTTTTGAGAAATCATTTGAATGATGGACATCAAATGGAAGTTACAGATTTGACTTGTGTTCATTGTTACAAGCTCTTTGTTGACCCGTTCTACTTACTTCTTCATGAAAAAGAACATTTGGTGACGTACACTTGTAAACTTTGCAAGAAAGATTTTCGATTGAAGGAAAAATATGAAAAACACATTGAAAGATTTCACAGTGAACCTGATGACAAAATTCGACCTTTCGCTTGTGACATTTGTGCAGCTTCGTTTAAGAAATTGGAACATATTAGAACTCACATTTTTTATAGACACATGAATCTAAGACCATTTTCTTGTCAAGAGTGTGGGAAATCGTTTAAATTTCAATGTGATTTGAATTCACATAAAAGAAAACACGAACCAAATACTTTTGAATGTCGATTCTGTAAATTTTCCGCCACCAAATCGAATGGACTTCGAGTCCACATGCAGAACATTCATGGAACTGAAAAGATTTATCAGTGTCAAATTTGTCTAGAATCTTTTCATTATTTGGAAGAGCTGAAGAAGCATAAACTTTATTGTGGAGAGGCTGGAGAAATTTATGAAGAAATTGAGATGATTGATTGTTGA
- Protein Sequence
- MPAYCSVADCMSNSKTSKNQGIQFHRLPKSAEHAKKWIKFCSKSVISINGFVCSRHFRDEDYDVIRIALTEDARPKRILKKNVVPTIRSNYDNFDEVQLIEIEVDEVEVEKELFPKSDPDEYQVEYLENEEEVLVEEEQPVPLETEPTPEVSAYLLRELNNAKNEIVLLRDRVSGLQSSLNDKDQKMAIILENIKDIRTEIKCKDCKNCTHSNIIVDPEDPGEELEYEVEYLEDQQSKYESNDLEDDYFEIEEVEDNSSVQDYIPPVIPSFSQLENPKIDDIARMIDEIEKRNEELINPKTKEKTKIWQKETIVVQDSQIQKITTPLVNAEAIKPRLILCPARDEDSDPFVEYKIEYRCGDCGKTFENANRFNKHKNIHPQPNGIQCPICPSVFQFLTHYQRHFKDVHIMDPKACKECSKVFKNKKRLNIHMRQHELVKRYQCTIEGCDKGFNSRTHLKNHLNVHTGNRPYSCNQCDKTFKQSYALTLHLRRHANIVYSCENCSQTFGSSSGRRRHARICDGRKSRGKYRDRNEKSYKPKIEYTFECFVPECQLKFSSKEVLRNHLNDGHQMEVTDLTCVHCYKLFVDPFYLLLHEKEHLVTYTCKLCKKDFRLKEKYEKHIERFHSEPDDKIRPFACDICAASFKKLEHIRTHIFYRHMNLRPFSCQECGKSFKFQCDLNSHKRKHEPNTFECRFCKFSATKSNGLRVHMQNIHGTEKIYQCQICLESFHYLEELKKHKLYCGEAGEIYEEIEMIDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01160508;
- 90% Identity
- iTF_01160508;
- 80% Identity
- iTF_01160508;