Basic Information

Insect: Parochlus steinenii
Gene Symbol: -
Assembly: None
Location: scaffold25:369391-372293[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00019 0.0077 16.2 3.3 1 23 105 127 105 127 0.97

2 11 1.3e-05 0.00054 19.9 1.5 1 23 133 155 133 155 0.98

3 11 0.00027 0.011 15.8 2.2 1 23 161 184 161 184 0.97

4 11 0.0084 0.34 11.1 3.5 1 21 190 210 190 212 0.95

5 11 0.0015 0.061 13.4 2.2 1 23 218 240 218 240 0.99

6 11 0.0001 0.0041 17.1 0.5 1 23 246 268 246 268 0.98

7 11 0.00034 0.014 15.5 1.4 1 23 276 299 276 299 0.97

8 11 0.0073 0.29 11.3 1.2 2 23 306 327 305 327 0.97

9 11 0.00014 0.0055 16.7 0.3 1 23 333 355 333 355 0.98

10 11 2.7e-05 0.0011 18.9 2.6 1 23 361 384 361 384 0.96

11 11 9.3e-07 3.7e-05 23.5 3.2 1 23 398 420 398 420 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00019	0.0077	16.2	3.3	1	23	105	127	105	127	0.97
2	11	1.3e-05	0.00054	19.9	1.5	1	23	133	155	133	155	0.98
3	11	0.00027	0.011	15.8	2.2	1	23	161	184	161	184	0.97
4	11	0.0084	0.34	11.1	3.5	1	21	190	210	190	212	0.95
5	11	0.0015	0.061	13.4	2.2	1	23	218	240	218	240	0.99
6	11	0.0001	0.0041	17.1	0.5	1	23	246	268	246	268	0.98
7	11	0.00034	0.014	15.5	1.4	1	23	276	299	276	299	0.97
8	11	0.0073	0.29	11.3	1.2	2	23	306	327	305	327	0.97
9	11	0.00014	0.0055	16.7	0.3	1	23	333	355	333	355	0.98
10	11	2.7e-05	0.0011	18.9	2.6	1	23	361	384	361	384	0.96
11	11	9.3e-07	3.7e-05	23.5	3.2	1	23	398	420	398	420	0.97

Sequence Information

Coding Sequence: ATGTCTGGAAAAGTGAAAATCGAATCAATATCTCATGAGAAATCATCAGACCTGCAAAACTATTTAGATGACTTTAACAAGGAGATTGATGACACCACAGGCTTAGTAGGCGAGGATGATTACGTAGTGGAAGGCACAGAACAAGACGATGAATTTAATTATGTGGTGATTGTGCAGGATGGTCAGGAGGATGGTGATAAGGATGAGTTCGAGTTCGAGGATGATGAGAAAAAAGACGATGACGATGTAAACCTGGCGTACGTGAAGACTGAGAAATCTTTCAAAAAATCACAATCTGCCTCTTCAGGCTCTCACATGTGTAGCTACTGTAATTATACGACGCCCAAGCGCTATTTACTGGCCAGACATATGAAAAGTCATTCAGATGATCGGCCACACAAGTGCTCAGTTTGTGAGAGAGGCTTCAAGACCCTCGCTTCGTTGCAGAATCACGTAAACACACACACTGGGATCAAGCCCCACAAATGTAAGTTCTGTGAGAGCGCCTTTACCACTTCTGGCGAACTAGTCAGACACACTCGCTACATTCATACACACGAAAAACCCCACAAATGCACAGAATGTGACTATGCTAGTGTAGAGCTGAGTAAACTAAAGAGACACATCAGATGCCATACGGGAGAAAGACCATATCAATGTGTCCACTGCACTTACGCTTCACCAGATACTTTCAAATTGAAGAGACATTTAAGAATTCATACAGGTGAGAAACCTTATGAATGTGATGTCTGCTTCGCAAGATTCACTCAATCCAACTCCTTGAAGGCTCACAAGCTTATCCACAGCGTGGGAGAAAAGCCAGTGTTCCAATGCGAACTCTGTCCAACAACTTGCGGTCGTAAGACAGATTTACGCATTCATGTACAAAAGTTGCATACTGCAGAAGAGCCCATCAAGTGTAAACGGTGCGGTAATCAATATCCTGATAGATATACTTACAAGATGCACGCCAAGACTCACGAAGGCGAGAAATGTTACAGATGCGACGTATGTCCTTATGCATCAATCTCGCAGCGTCATCTCGAGTCGCATATTCTCATTCATTCTGATCAAAAACCATTTACTTGCACTCAATGCGAACAAACTTTCAGACAAAAGCAGCTCCTCAAGCGACATGTGAATTTGTATCATAATCCTAATTATGTCCCATCAGCACCCAAAGAAAAGATGCACACTTGTCCCAATTGCACGAAAGGATTCAGGCATAAAGGGAATTTAATTCGGCATATGGCTTCTCATGACCCAGACCACAAGCCAGAACAATGGAAAATCAAGATAAAAAATGATGACGAAGAAGATGAAGAGGAAGAGGAAGAGGAGGAAGAAGAGAATATTGTGTCTGAAGTTGGAGAAGATGGGCAAGGTTTCGTTGTTTTTGAAGTTGTCAATGGAGAGATGGAAGAAGAGGAATTGGAGGAGCAAGATTTAGAAACCGTTGAAGAAGTTGATGAGATGGGTGATCCCATTGAGGATGTGGAGTTTGATCTTAACGAACAAATGGAGGAAGAGATTCCATCGATGGAGCCTAAATCGTCTGAACTCGCTTCTTGCTTTGGTTTTGACAGTGAAAACAGTGAAAGTGAAGTTGACGAAAAATTAAGCAAATCGAGCATTAAAAAAATCCTTAACATGCCCTAA
Protein Sequence: MSGKVKIESISHEKSSDLQNYLDDFNKEIDDTTGLVGEDDYVVEGTEQDDEFNYVVIVQDGQEDGDKDEFEFEDDEKKDDDDVNLAYVKTEKSFKKSQSASSGSHMCSYCNYTTPKRYLLARHMKSHSDDRPHKCSVCERGFKTLASLQNHVNTHTGIKPHKCKFCESAFTTSGELVRHTRYIHTHEKPHKCTECDYASVELSKLKRHIRCHTGERPYQCVHCTYASPDTFKLKRHLRIHTGEKPYECDVCFARFTQSNSLKAHKLIHSVGEKPVFQCELCPTTCGRKTDLRIHVQKLHTAEEPIKCKRCGNQYPDRYTYKMHAKTHEGEKCYRCDVCPYASISQRHLESHILIHSDQKPFTCTQCEQTFRQKQLLKRHVNLYHNPNYVPSAPKEKMHTCPNCTKGFRHKGNLIRHMASHDPDHKPEQWKIKIKNDDEEDEEEEEEEEEENIVSEVGEDGQGFVVFEVVNGEMEEEELEEQDLETVEEVDEMGDPIEDVEFDLNEQMEEEIPSMEPKSSELASCFGFDSENSESEVDEKLSKSSIKKILNMP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -