Pste006298.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold201:151118-157073[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.31 12 6.2 0.0 2 23 8 29 7 29 0.96 2 14 0.00017 0.0069 16.4 1.2 1 23 478 501 478 501 0.96 3 14 0.00062 0.025 14.6 1.3 1 23 615 637 615 637 0.98 4 14 0.00071 0.028 14.5 1.1 3 23 641 661 640 661 0.95 5 14 0.0049 0.2 11.8 2.5 1 23 667 689 667 689 0.97 6 14 3e-05 0.0012 18.8 1.4 2 23 696 718 695 718 0.96 7 14 0.022 0.89 9.8 0.2 5 23 731 749 729 749 0.97 8 14 6.3e-05 0.0025 17.8 4.5 3 23 756 777 755 777 0.96 9 14 0.02 0.79 9.9 0.3 3 23 791 810 789 810 0.97 10 14 0.00015 0.0058 16.6 3.1 1 19 817 835 817 839 0.94 11 14 0.0023 0.093 12.8 0.5 1 23 847 869 847 869 0.98 12 14 0.00014 0.0057 16.7 6.0 1 23 875 897 875 897 0.98 13 14 3.9e-05 0.0016 18.4 3.6 1 23 903 925 903 925 0.98 14 14 0.0014 0.056 13.5 3.6 1 23 931 953 931 954 0.95
Sequence Information
- Coding Sequence
- CTGAGCAAGATGGAAGTGATAGAGTGCCCTGTTTGTGAGCTATACCTCCGACCCAACATCACTTTAATAAATCATCTGGATACCCATCCGAAGGAGATGATAATTAAGGCTCTAATGTCACTATCTAAACCCAAAGTCGAGGAAGAACCACCAAAAACTATGTTTTTACATCCTGCACCCTCTTCTGTACCCCAGATGTCACAAATGTATCATCACCCACAGGAACAACAACAAATCAAGGCTGAAAACCAATACTTTATCAGTAAACATCCTATCAACCACCAGCAATCTATATTTAGCAACAATGGAAATACTGGCAACTACAGAATTCAACAAATTACGCTCGATTCTTTAAGCAATGCCCAAAATGGCCAAAACATCCACAACATGCAAAATATGCAAAATATTCCAACAATTTTGAATCCCACCACTGCGTCACCAATGTCAGCTCCACAACATCCTCCCCAGCAATTCAGATGTATTCAAAACACTGAAAAGAACATTATGATTGTAAATACTTCCAGCACGCAGTTCATTCATCAGCTGACGGGGAAAAAACAACAACCAAATTCACTTTCAATGGAAACTACGACTACCCCACAGACTGTGGATCCAGGAATTACATTATTCCCGAGATATACCAGTGAAAAGTATTCAGGTATGTCCCCCACCTCCTTACAGCTCGGCTATCTCATCAAGCACTTGCACACATTTGACGACACGGCTGGACCGAGTCGAGTTTCTAGTAGCCGAGCAGCGAGCAGCGGTGGTCCAAGTTATTTGTACGCTAATGATAGACTTCGCTTTTCACCGCCACTGTCACCGGATGCTTACATTCAGTCGTTTGGTGGACAAAGAGCGATTCAAGATGAGAAAGATTGGCATCAGGAAAGTTCCAGGTGTACGCCAACTTCTTTGGATGATAATCGTAGTCGATCTTTCACTGATATTGATTTGCTTAAGAATAACTCAAATAGTTTGAATGCGAGCAATAGCAGCAGTTGTCATGAGTTGAGCCAGAAAAGGTCGATATCAATTGATAGCTTGAATATGAGGACAGATGAGAAAATGCCGGCGAGDGGAGAGATTTCAGAGCAGGAGAGTAATGGGGAAATTGAACAACCGTGGCATCATCAGTTCTATCCAATCCAAGAAATTATGCCACCACAGTATCCCAGCTCTTATGATATATCTACAGCACAAGAGTGCTGGAACCTGTCCAAACATGACAGTCAGAACGCCTGTGATTCCAATATCATTCAAAATGTGATTATTAAGTTCCCACCTTTGAACCAGAACCAAGAAGACGACATGGATGTAAAGCCAGTTGATTTGCTGAAAGACATAATTATCTCCAAGTCTGAGACTTTGGCGTCTGGAAGTATCATGGACAGCCTCTTGGCCATCTCTCGAAAACCTCGTGTTCGTTCTTTTCGCTGCCCCGACTGCCCAACTGTCTTTAATAAGCTGAAACAGAGACGCAAGCATATGATAAACACACACAATCATCCAGATGGCAAAGTGTCGTCTCGCAACCGAAACCGAACCTCGACAATCACCTCCGCACAAGCCACAGTATCCAATAAGCCAATAGCCGTAGCTGAAATAGCCTTAACTCCAGGCATTGTCAAGTGTGAAGTGGTCCAAGCGCAACCGAGCACTTCCAACATAATTACCGTCAAGAATGAGATGAATCGCATTATTATGAACTACTCGATGTTGAAACGTGAACTGACCGTTGATCCGGCCGAACCCAAAATGGAAATGCTGGAACCTTCCACTTCAGCTCAACCTCCAATACTTCGGACTTTGGTGCCAGTGGGCTTGAAAATGAAGAGAACTTACATTTGTGCCACGTGCAAAGAGGAATTTAAGACACTCCGGCTCTTTGACAGACATTTGAGGACGCATCCGGCCGAGTGTGTGGCGTGCGGTAAAACTTTCCATAATTGGGTCAACTTTTCGATTCATCTAAAGAGACATTTGAATATCAAAAATCATGTTTGTCGATTCTGCACTAAGCGGTTTGTAATCAGACAGAAGCTGGTGGAACATATGAGAGTTCATACTGGATCAGCCCCGCTTAAATGCGCTTACTGTACTGAGAGATTTAGAAGATACTCTAACCTAATTCAGCATCGGAATCGCGTTCACTTGCACAGGAAGCCAAGCAAAAAGGATTATGTGTGCGAGTGTGGTGAAATCTACCCGACCAAAGCAAAGTTGCATTGGCACCAAGAGACCCACGACCAGCGACCTAAAGCCTGTCCTCACTGCCGCGAGAGATTCACACACAAGAACAGTCTTACTCGACACATTCGGTTATCACACACCGACAAGTACACATTTGAGAGGAGCAAGACTATTGACTGTCCCATTTGTCACGCCACTTATTTGTCGTCCAGCATTAAAGCGCACATGCAGACGCACAGCAATGTCAAGAAGGAGTATAGTTGCGCCATTTGCACCAAATGTTTCTCCACTAAATGGAATTTAAAGCAACATAGTTGGACACATGCCAGCAGGTCCAGCAAACCGTTTCAATGCACACAATGCTCGAGCGCGTTTATTAGGGAAACTGACTTTGTCACTCACATGAATGCCCACAAGTCCATCAAACCTTACACGTGCAATCACTGCGGTTGTCAGTTTGTGCGGAAATATAATTGGCTGAGACACACGCGGGAACATGAGAAGGATAAGAAATTTAGCTGCGAGACGTGCGGCAAGAAGTTCCATCGAGCGTATTATTTGACGGAACATAAGAGGGTGCATTCGGGAGAACGTCCTTTCGCCTGTAATATCTGCGGCAAGACGTCCGCCACCAAGACCAATCACAATAAGCACATCAAGATTCATCATGCAAGGGATCCACTTACTGCTGAAGGATAA
- Protein Sequence
- LSKMEVIECPVCELYLRPNITLINHLDTHPKEMIIKALMSLSKPKVEEEPPKTMFLHPAPSSVPQMSQMYHHPQEQQQIKAENQYFISKHPINHQQSIFSNNGNTGNYRIQQITLDSLSNAQNGQNIHNMQNMQNIPTILNPTTASPMSAPQHPPQQFRCIQNTEKNIMIVNTSSTQFIHQLTGKKQQPNSLSMETTTTPQTVDPGITLFPRYTSEKYSGMSPTSLQLGYLIKHLHTFDDTAGPSRVSSSRAASSGGPSYLYANDRLRFSPPLSPDAYIQSFGGQRAIQDEKDWHQESSRCTPTSLDDNRSRSFTDIDLLKNNSNSLNASNSSSCHELSQKRSISIDSLNMRTDEKMPAXGEISEQESNGEIEQPWHHQFYPIQEIMPPQYPSSYDISTAQECWNLSKHDSQNACDSNIIQNVIIKFPPLNQNQEDDMDVKPVDLLKDIIISKSETLASGSIMDSLLAISRKPRVRSFRCPDCPTVFNKLKQRRKHMINTHNHPDGKVSSRNRNRTSTITSAQATVSNKPIAVAEIALTPGIVKCEVVQAQPSTSNIITVKNEMNRIIMNYSMLKRELTVDPAEPKMEMLEPSTSAQPPILRTLVPVGLKMKRTYICATCKEEFKTLRLFDRHLRTHPAECVACGKTFHNWVNFSIHLKRHLNIKNHVCRFCTKRFVIRQKLVEHMRVHTGSAPLKCAYCTERFRRYSNLIQHRNRVHLHRKPSKKDYVCECGEIYPTKAKLHWHQETHDQRPKACPHCRERFTHKNSLTRHIRLSHTDKYTFERSKTIDCPICHATYLSSSIKAHMQTHSNVKKEYSCAICTKCFSTKWNLKQHSWTHASRSSKPFQCTQCSSAFIRETDFVTHMNAHKSIKPYTCNHCGCQFVRKYNWLRHTREHEKDKKFSCETCGKKFHRAYYLTEHKRVHSGERPFACNICGKTSATKTNHNKHIKIHHARDPLTAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -