Pste005639.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold811:21166-26128[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0035 0.14 12.3 3.1 1 23 30 53 30 53 0.95 2 26 0.002 0.078 13.1 1.8 1 23 59 81 59 81 0.98 3 26 1.6 62 4.0 2.3 1 23 89 113 89 113 0.88 4 26 0.0055 0.22 11.7 3.8 1 23 119 141 119 141 0.95 5 26 0.42 17 5.7 1.3 2 23 150 172 149 172 0.95 6 26 0.056 2.3 8.5 1.9 1 23 178 201 178 201 0.93 7 26 0.011 0.46 10.7 1.2 1 23 274 299 274 299 0.97 8 26 7.9e-05 0.0032 17.5 2.6 1 23 306 328 306 328 0.98 9 26 0.00072 0.029 14.4 0.3 2 23 337 359 337 359 0.94 10 26 0.027 1.1 9.5 4.4 1 23 365 387 365 387 0.95 11 26 1.2e-06 4.9e-05 23.2 1.4 1 23 396 419 396 419 0.97 12 26 0.0003 0.012 15.6 0.3 1 23 425 448 425 448 0.95 13 26 0.0041 0.16 12.1 3.4 1 23 500 523 500 523 0.95 14 26 0.0002 0.0079 16.2 0.5 1 23 529 551 529 551 0.99 15 26 0.0023 0.092 12.9 1.9 1 23 589 612 589 612 0.95 16 26 5.9 2.4e+02 2.1 1.7 1 23 723 746 723 746 0.93 17 26 1.2 46 4.4 0.4 1 14 757 770 757 773 0.89 18 26 0.0011 0.044 13.9 2.5 1 23 777 800 777 800 0.97 19 26 0.0052 0.21 11.7 2.1 1 23 806 829 806 829 0.97 20 26 6.4e-05 0.0026 17.8 0.5 1 23 842 865 842 865 0.97 21 26 0.00079 0.032 14.3 0.2 3 23 872 892 870 892 0.97 22 26 0.00031 0.012 15.6 3.1 1 23 904 926 904 926 0.98 23 26 1.6 65 3.9 0.5 1 23 932 955 932 955 0.88 24 26 0.17 7 6.9 0.5 1 23 990 1013 990 1013 0.90 25 26 0.001 0.04 14.0 1.2 1 23 1018 1040 1018 1040 0.98 26 26 0.005 0.2 11.8 3.5 1 23 1047 1069 1047 1069 0.97
Sequence Information
- Coding Sequence
- ATGGAGTCGATGAAGATGATTCATAAACAACAAAAACTTAAGGGAAACAAGGTGAAGGTGGTCATAGCAAATGTGGGAGAAGAGCTGCACCAATGCATGGAGTGTGGAGAACTCTTTAAATACGAGAAATATCTTCGAACTCACATGAGCTACAAGCATAATGACGAACGAAAATATAGTTGCGAGGCTTGTGGACGCACTTTTAAAACTAGTAAAGACGTTTACTATCATTTCCAAACTCATCTCACCTCTTCTGAGAAGCGATTTCGTTGTCGCTTTTGTGATTATGGTGCTTTCAAACGAGAAGACCACTTGAACAGTCATAATGCTATGAAGCATTCAACTGAACGTCCTTTCCTTTGCTCCAAGTGCAGCTATTCTTGTAAAACTAAGAACCAGCTAGTGGTTCATGAAAGATCTCATTTTGACCAACTGGAACCRCCACTKAAATGTAAAGTATGCGGRCATGGCGTTTACGAGAATAATATGATGAGACTCCACCTGAAAAGTTTCCATGGCATTGAAGCTGGTCATGACTGTAAAGAATGTCCTTCMTCATTTAAATTCTTYGTGGATTTGAAAATACATGAAAAAGAATTTCATCCGAAGCCTAAGGTGAAGAAACTGAATAAAAAGAAGAAGAAGAAGAAAGTGAAACCAGTGAAAACATTTAAGATCAAGAAAGAAATCGTTGCAAAAGACAAAGTTATAAAAACAGAACCAGATGGCACAGTCTTTGAAATTGTCGATATGGGAATGGAGGTGTGTTTGTTGCAAGAAAATCAATACCAGCAGGAAAATTTTTTGAATGAATCGGTTTTTCAATGTCCATATAAGAACTGCAAGACTAAATTAGCCACGGAAGAGTTGCTAGAAAAGCATCAAAACAAGAAGCACCAGGAACATTCACCWATTTTTACTTGCGACATTTGCAAGCTCACCTTCCGATTCAAAAAAAAGCTCATTAATCACATGGATCGTCATTTGGAAGAAGGCGTTCGAGAGAATTATTGTGATACTTGTGGAGCTTCTTTTAGAGAAGAATACGAGCTCAAAACTCATATTCTTTATAAGCATACTAAAGCTAATCCGCATTGTTGCTCGATTTGCTCTTACAGTGCTAAAACAAGATCAGAGTTGAAACAACATGAACAATTGCATGAACAACAGATCAACGAATTACCTTACAAATGTAAAATTTGTGAGCAGACCTTCAAACGCTCCTCCTTGCTTCGTAATCATCTTATTGTGTACCACCAGCTTGAAGAAGTGTATGAATGCAACTCTTGCGAAGAATCTTTTAAGTACTATAGAGAATTAAAGGCGCATATAGCTCAGGCCCATACAACAAAGTATGAAATTCTTGAAATTGAAAAGATTAAGCAGGAAGTTAAAAATAAAAACGTCAATGATAAAGATGTTGATTCTGGCGAAAAGGATGATGATAAAGACAAAAAAGAAGAAGAATCAGAAGAATCAGAAGAAGAGGTTCGTCCATATCCCTGCCCTATCTGTGGAGCTTGCTTTCGAACAACTCGTAATATGCGCTGCCACATGACTATAAAGCATGATAAATCTCGAGCCTTCAAATGCGATCAATGCGATTATTCATCTGCTGTCAAAATACAACTGATGGCTCATCAAAAAACTCACATGGATGAAACTTTTGAGCGTTATTGTCGATTTGCTCCCTGCGATTACAAACATTTATCAGCTTCACAACTAAGAAAGCATGTTTGGAAGTGCCATAGGAGCGAGGAAGTTTATCATTGTGAGGACTGTGACATTGGATTTAAATACTTYAATGATTTGACTGCTCATAAGAAGGAGAAACATTCTGGGATGGCCAATCCGGCTGTTGATTTGGCAATTCGAGTTCTCAAGGCTGAAAGAGTTGGTAATTCCGGTACTCATTTTGCAGACGATGATTTTGAAGATGTCATTGACCATGTRATTTTTGATGATTTTGTGGAAGAACCAGAAGAACCAGAAGAAAAAGTATTTCCWGGCCATCTTGGCTTTGTTGCGGTGGAAGAAGATTATAATGATCATTTTGACGAAAATGARATAAAAGAGGAAATTCCAGAACCATCTGACCGACCATTTGGGTCTTGTAAGAATATCACTAAGGTCCCTCGTTCYTTAATGGTGCAATGTGACAGAATCTACAAATGTGCTCGCTGTCAATCCTCATTTCTCACWATCAAAGAATATAAAGATCATCAAAATTTCGACCACGATCAATTTGACGACACTCTTGAGCTTAAGTATATTTGTGACATGTGTGGCTCTGCATTTAAGAAAAAACATAAGATTCATGTAAGACCCTTTAAATGTAGGATCTGTGAGAGAATGATATCAACGTCGAAGCTGCTAAGAGCTCATATGCATTCAAAACATCAGAGCAAAGACGTTTATCACTGCGAAGAGTGCGATATTGGCTTTGAATTCCACAATGCTTACAATAAACACATCAAATCTGGCCACAATTTCAAATCCGACGAGCATTCTGAGCGTCGTGAATATCCTTGCTTGGAATGCGAAAAGGTTTACTATCACAATGAAGCTTTGTGGCGCCATCAGCAGAGAGTGCATCGAGTGGATCCSCAAATTTGTCAGATATGTGGCAAAGGAGCAAAAAATAAAGCGACAATGAGCGCGCATATGAAATCTCACGTGCCAAAGGATCCAAATAAGCCGAAAATTCTTTATAATTGTGATCAGTGCGAAAAGATATTCAGGGATAGGCAGTGTTGGCAAGCGCATTATAGGACCCATACCTTAGAGCTTCCCTATACATGCAAAGTTTGTGGAATATTGAAAAAAACTGCTCGTGAAATGTTGAATCACAACCGTCGGGAGCATTTAGTGGTTCACACCTGCAAGCACTGTAAACATGAACCCTTCAAATCAAGGTTAGAGTTGTTTGAGCATAAAAAAGCGCATCACCGTAAACTGGCTAAAAACTATAATTGTGATGTTTGTGGAAAACAATACCACAGCGGCGTTGCAATGAGTAATCATCGTAATGCTATGCATAGTGGTATTCAATATATTTGTGACACGTGCCAGGGGGTGTTTAAAACAAGGAAAACTCTGTTCGCCCACAAAAAAATCCATGATGATAATGCGAAAAGATTTGAATGCGATTATTGTCAGAAGCTCTTCAGACTTAAAAAGACTATGACAAGACACAGAGACAGGCATGTTAAAAGATCTGAAACCCTAATTGTATATTGCATTCGTTGA
- Protein Sequence
- MESMKMIHKQQKLKGNKVKVVIANVGEELHQCMECGELFKYEKYLRTHMSYKHNDERKYSCEACGRTFKTSKDVYYHFQTHLTSSEKRFRCRFCDYGAFKREDHLNSHNAMKHSTERPFLCSKCSYSCKTKNQLVVHERSHFDQLEPPLKCKVCGHGVYENNMMRLHLKSFHGIEAGHDCKECPSSFKFFVDLKIHEKEFHPKPKVKKLNKKKKKKKVKPVKTFKIKKEIVAKDKVIKTEPDGTVFEIVDMGMEVCLLQENQYQQENFLNESVFQCPYKNCKTKLATEELLEKHQNKKHQEHSPIFTCDICKLTFRFKKKLINHMDRHLEEGVRENYCDTCGASFREEYELKTHILYKHTKANPHCCSICSYSAKTRSELKQHEQLHEQQINELPYKCKICEQTFKRSSLLRNHLIVYHQLEEVYECNSCEESFKYYRELKAHIAQAHTTKYEILEIEKIKQEVKNKNVNDKDVDSGEKDDDKDKKEEESEESEEEVRPYPCPICGACFRTTRNMRCHMTIKHDKSRAFKCDQCDYSSAVKIQLMAHQKTHMDETFERYCRFAPCDYKHLSASQLRKHVWKCHRSEEVYHCEDCDIGFKYFNDLTAHKKEKHSGMANPAVDLAIRVLKAERVGNSGTHFADDDFEDVIDHVIFDDFVEEPEEPEEKVFPGHLGFVAVEEDYNDHFDENEIKEEIPEPSDRPFGSCKNITKVPRSLMVQCDRIYKCARCQSSFLTIKEYKDHQNFDHDQFDDTLELKYICDMCGSAFKKKHKIHVRPFKCRICERMISTSKLLRAHMHSKHQSKDVYHCEECDIGFEFHNAYNKHIKSGHNFKSDEHSERREYPCLECEKVYYHNEALWRHQQRVHRVDPQICQICGKGAKNKATMSAHMKSHVPKDPNKPKILYNCDQCEKIFRDRQCWQAHYRTHTLELPYTCKVCGILKKTAREMLNHNRREHLVVHTCKHCKHEPFKSRLELFEHKKAHHRKLAKNYNCDVCGKQYHSGVAMSNHRNAMHSGIQYICDTCQGVFKTRKTLFAHKKIHDDNAKRFECDYCQKLFRLKKTMTRHRDRHVKRSETLIVYCIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -