Pste001500.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold138:179945-183014[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0002 0.0082 16.2 0.6 3 23 9 30 7 30 0.94 2 20 0.024 0.98 9.6 3.6 1 23 36 58 36 58 0.97 3 20 2.1e-05 0.00085 19.3 2.2 1 23 64 86 64 86 0.97 4 20 0.00074 0.03 14.4 2.8 1 23 92 114 92 114 0.99 5 20 0.078 3.1 8.0 1.0 2 20 120 138 119 142 0.94 6 20 0.00033 0.013 15.5 5.3 2 23 149 170 148 170 0.96 7 20 0.021 0.84 9.8 1.4 2 23 189 211 188 211 0.95 8 20 3.9e-06 0.00016 21.6 1.3 1 23 219 241 219 241 0.99 9 20 1.6e-05 0.00064 19.7 2.0 1 23 399 422 399 422 0.97 10 20 0.00052 0.021 14.9 1.0 1 23 426 449 426 449 0.93 11 20 4.6e-06 0.00018 21.4 1.2 1 23 456 479 456 479 0.97 12 20 0.085 3.4 7.9 3.8 1 19 485 503 485 506 0.93 13 20 0.00043 0.017 15.2 1.4 2 23 518 540 518 540 0.91 14 20 0.17 6.7 7.0 0.1 2 23 617 638 617 638 0.96 15 20 3.1 1.2e+02 3.0 1.2 9 23 646 660 645 660 0.89 16 20 0.00021 0.0082 16.2 3.9 1 23 667 689 667 689 0.98 17 20 0.027 1.1 9.5 1.7 2 21 694 713 693 715 0.92 18 20 2.1e-05 0.00086 19.2 1.2 1 23 721 743 721 743 0.98 19 20 0.00074 0.03 14.4 1.0 1 23 750 773 750 773 0.93 20 20 0.0022 0.09 12.9 0.8 1 21 779 799 779 800 0.94
Sequence Information
- Coding Sequence
- TTGGTGTTCAAAATGGTTGTAATCTGTGAACAATGCGGGAAGTCTTTTCCAAAGCCATGCAAACTAAAATATCATATTGATAGTGTACACTTAAATATTAAAAATTTTTGCTGTCCACTTTGCAATCGAGCCTTTGGCACAATCGGAAAAATGCAATATCACCAGCATACTCATAATGATGTCAGAGATTTTAATTGCGAAACGTGTACCAAAAGCTTCAAAACCAGGAGCGACCTTTATCAACATTACGAGATTCACGATAAAGGAAAAGAATTCAAATGCCAGGAGTGCGGTGAAATTTGTCAGAAAAGAAGCACTTTTGAAGTTCATATCAAAAAACATGTCACTGGAGAAACTACCTGTAAAGAGTGCTTTAAAGAATTTGATGATTACAATCGACTTAAAGTACATCTTTGGAATAACCACAAGAGAGACCCTGAGCTGGAATGTACAATTTGTCACAAGTTCTTCAATAGAAAACTACACTTATCCAAGCATCTTGAAAGCCATCAACGGAAAGAAATGAAAAAAACTTTGAAATCTAAAGGATTGGATTTATTGATAAAATGTGCTCAATGTCCTCGATACTTCAAGAGTGAAAAAACTTTGAGTTTGCATTTTCAAAAGTCTCATGAAAGTATCTTATGTTATGATTATACTTGTGATTACTGCTCAAAATCTTTTCAAAGGAAGTTAGGATTACTAAGACATATCAGAGTACATTTTTCTGAAAGAGTAAATATTAATGAGACGGCAGTGAGAGRTAATATAAAATTGATGCTAGTGGAAGATAATATAAAAGTTTATGAAAGTGTACAAAAAGAAGAAACTCCAGAGATGAAAGTCATTGAAAATACCTTGCTTACTGTTTTCGTTAATAATCCAAAAGAGACTGAAAGTTACTTGCTAGCTGATATTAAGCAAGAACCAAATCCACTAATGATTTCCGAAGATGAAATAGATATTAAGCAAGAGCTAGAGGATGATGATTACAGAATTCCACTAACATCCCCCGACATAAAGGATATTAAAAGAGAGATTGTTCATGATTATTCTAAAAGTACTTTGGAATATGGTGTTCCAGAAAGCTTAGAAGCATCTTCTATTTTGGAGCCATTTTTCAAAATCGAGCCTGAAATTATTTTGAAAACTTTAGAAACATTTGAATCTGCAGCAAAAACAGAAATGAAATACTTTCCTTGTGAGTCTTGCGAAGAATCTTTCAACACAAATGAAAATTTACGACATCATCAAAAGAAAGAACATATGCAGCAATTTTTATGTGAATTTTGTGAAAAATCTTTTGAATTTTTTTCAAGATTACAAAGACATATCAGAGCAGTTCATCAGCCAAAAATTAAAGAGCATAAGTGTGACCAATGTGACAAAGCTTTCCCTAATTCAGATTTGATGAACCGACATGTCCGTAGAATTCATAAAAAAATGTTGGACCATAAATGTAGTTTCTGCTTCAAAGGGTTTCATACAAGAATGGAATTGGAAAAACATTCWTTRAAAAGTGAAGATTGTTCTTCYGATAAACGTTTAGAATATTGCGAGACTTGTCAGAAAACTTTTACTGACTCAAAAAAGCTGGAAATKCATCAAGTCAATGAGCACTCTKTGCTGAAACAAGCCTTTTGTAGCCTYTGTGAATTTCGAGGAARTAGAATTGAGCTTAAACAACATTCTCACGAAGAGCATAACCTTGATTGTAAATATGATTGTGAAGCTTGCTTATGTTCATTCACTGCCCATCAACCCATGAATCGACACCGTTTGGAAATGCATGATCATCTATCCAAGCACACCAAAAGGGTACACAAAGATGGGTYRAAACTGACAAGAACTTGTGGAGTGTGTAAATTAGAGTTTCGACTAGCTAATGAGTTTTATGAGCATATTGCAGTACATCTTGATGCTAGTATTTGTAGGATATTCACAATHCGAAGTCATCTTATGGTACATATGACGCAGCATATCGATGCATACGATGGATACACTTGTGATACATGTGGAAAAACATGCAAAGCTTTCTCAAACCTCTTAAAACACAAAAAAATCCACAATAAAGAAATTGAATGTGAAGTGTGCAAGAAATTGTTCGCTACAAAACAAAGCCTAGAATTACATTCAAGATGCCACAATAACTATCGGCCATATTCTTGCAATATTTGCAATGCAACTTTTAGTGTYCAAGCCAGCTTCAAATATCATATGCAAAAACATGATGGGAGTTTACCTCAATTTCCTTGTACGATATGTGGGAAAAATTTTGATAGCAAATTTTTCATGAAATCTCACGTAATACAACAACATTCCAAGCACAATGAATTTAGATGTGAAATATGYTTTGAAGAATTCAAATTCTTGAAGCAACTGGAAAGACACAAGGAGACTAAGTGTCCTGGAAATAAAATGGTTGAACCAATATTTTAA
- Protein Sequence
- LVFKMVVICEQCGKSFPKPCKLKYHIDSVHLNIKNFCCPLCNRAFGTIGKMQYHQHTHNDVRDFNCETCTKSFKTRSDLYQHYEIHDKGKEFKCQECGEICQKRSTFEVHIKKHVTGETTCKECFKEFDDYNRLKVHLWNNHKRDPELECTICHKFFNRKLHLSKHLESHQRKEMKKTLKSKGLDLLIKCAQCPRYFKSEKTLSLHFQKSHESILCYDYTCDYCSKSFQRKLGLLRHIRVHFSERVNINETAVRXNIKLMLVEDNIKVYESVQKEETPEMKVIENTLLTVFVNNPKETESYLLADIKQEPNPLMISEDEIDIKQELEDDDYRIPLTSPDIKDIKREIVHDYSKSTLEYGVPESLEASSILEPFFKIEPEIILKTLETFESAAKTEMKYFPCESCEESFNTNENLRHHQKKEHMQQFLCEFCEKSFEFFSRLQRHIRAVHQPKIKEHKCDQCDKAFPNSDLMNRHVRRIHKKMLDHKCSFCFKGFHTRMELEKHSLKSEDCSSDKRLEYCETCQKTFTDSKKLEXHQVNEHSXLKQAFCSLCEFRGXRIELKQHSHEEHNLDCKYDCEACLCSFTAHQPMNRHRLEMHDHLSKHTKRVHKDGXKLTRTCGVCKLEFRLANEFYEHIAVHLDASICRIFTIRSHLMVHMTQHIDAYDGYTCDTCGKTCKAFSNLLKHKKIHNKEIECEVCKKLFATKQSLELHSRCHNNYRPYSCNICNATFSVQASFKYHMQKHDGSLPQFPCTICGKNFDSKFFMKSHVIQQHSKHNEFRCEICFEEFKFLKQLERHKETKCPGNKMVEPIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -