Pste010635.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parochlus steinenii
Gene Symbol
-
Assembly
None
Location
scaffold150:86117-90455[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00035 0.014 15.4 1.8 2 23 184 206 183 206 0.97
2 16 0.078 3.1 8.0 0.2 2 19 227 244 227 247 0.92
3 16 0.064 2.6 8.3 0.1 2 23 257 279 256 279 0.95
4 16 5.5e-05 0.0022 18.0 1.1 3 23 287 307 285 307 0.96
5 16 0.00018 0.0072 16.3 2.7 1 23 313 335 313 335 0.98
6 16 0.0045 0.18 11.9 0.2 2 23 341 362 341 362 0.97
7 16 0.015 0.6 10.3 6.0 1 23 368 390 368 390 0.98
8 16 3.4e-05 0.0014 18.6 2.7 1 23 396 418 396 418 0.96
9 16 0.00018 0.0071 16.4 2.0 1 23 424 448 424 448 0.98
10 16 1.6e-08 6.3e-07 29.1 5.3 1 23 454 476 454 476 0.99
11 16 0.00011 0.0043 17.0 4.0 1 23 482 505 482 505 0.96
12 16 1.8e-06 7.3e-05 22.6 2.1 1 23 539 561 539 561 0.98
13 16 0.00016 0.0064 16.5 1.8 1 23 567 590 567 590 0.95
14 16 6.3e-05 0.0025 17.8 2.2 1 23 596 618 596 618 0.98
15 16 0.0048 0.19 11.8 3.0 1 23 624 646 624 646 0.96
16 16 0.0039 0.16 12.1 1.2 1 23 652 674 652 674 0.98

Sequence Information

Coding Sequence
ATGGATTTTAACACAATTTTAAATAAAGCTGCGTACAATGAGATTTGTCGATTATGTTTAAATATAGAGGATACCCGATTTTATTCTATTTTTGAAACAATAGAAAATTTTGTAATCTCAGCCAATGAAGCTTTAAAGATCTTCCAACTAATTAAAGAAGAAATTTCACCAGACGATCAGCTTCCTCACCAAATCTGCACAAAGTGTTTTAATATAATAAAAGAGTTTTTGAACTTCAAATTTAAAACAGACATATCCCAAAAAACCCTTTTAGAAGCGTTTGGATTAGTGGAGCATGTGGAACAAATAGAAGATACTGAACCAGTAAAACCAAATGAAAAATCTACTAAATTTGAGTTTCTTAGCATAGAACGGCTAGAAAAAATCGAGGAATCCCAAAATGAAGAGCTTTTCAATTCCGAAGAAGATTCTGCTAATTTTGAGGATCAAGAAATGTTGGAGGAAACGTTAGACATTGAGAGTGATGATTCTTTCAAATCTACTAAAAATACACATGAAGTGTGTAAAACGGAAGAAAAAACAATCCTGAAATGTGAAATTTGTATGAAACAATACAAGAAAATCTATAATCTTCAGCGCCACTTAAGAACTCAACACAAAACAGCTGACCATAAAAAGATTCGCCAAAAAAATATTATCCAACAAAAATATTCTGAAGTTTGTGACAAATGTGCCAAACGCTTTAATAATTTAGAATCTTATGAAGAGCATAACAAAGCTCGAAATTGCGTTCCAGATCAAAACATCAAGTGCAGATTTTGTGATCAAGTTCTGGAAACAGTTGATTTGTTAGAAGAACATCTAAAAAACGTTCATCCTAAAGGAAAACAGCACCTCTGCCCAATCTGTAATAAGAGCTTCCCAAGTGTTTCTAATCGTAACACTCATATTCAGTCCCATAACTCTGAAAATACATTTTCTTGTGATCAATGCAATCAAGGATTTAAAAGCACAGTTTATTTAAACAAACATAAAAAGACTCACGTAATCTGTGAAAACGTTTGTCCTATATGCAGTCAGCAGTTTGATAATTTGGCCAAATATGAATATCACTTAAAGTCGCATGAAGTAAAAAAGAAATATCAGTGCCAATATTGCGATAAAAGTTATATGCAATTTCATCATAAAGCAAATCATGAAAGAATTCATACTGGAGAACGACCATATTTATGTAACGTTTGCGGTAAAGATTTCAAACAAGAATGCAATTTCAAGCTTCACTTAAGAATTCATTCAGGAGAACGACCTTTTACATGTGAAGTTATGGATTGTAACAAAACTTTTATTCAACGAGGATCTTATATGATGCATTTACGACACCATAATAACGAACGAAAGTATCAATGTCATCACTGTGGCAAAAGTTTCATTCAAAAAAGCTCGCTTACAGTACATTTACGGACCCATACAGGTGAAAAACCCTTCCAATGTACTCAATGCAACAAATCGTTCATACAGGCTCAACAATTAAAATATCATTATCATTCGTTGCACAATATCGGCGACCCACCAAGCATTAAAAAAGATCGAGGCAATTCAACAGTTCGAGCAATTAAAGATCTTAATAAAGAGCCCAGAGAAACTATACACCCTTATGTTTGCCACTTGTGCAACAGAACCTTCAAAGTGCCATCATCCCTTTCAAAGCATCTAAAAATTCATACAGAGACTAGGAAACATGTTTGTAATCAATGTTCTAGCTCATTCAAGAGAGCTGAACATCTTCGAATTCATATAAATGGAGTTCATTTAAAGCAGAAAAATTACCATTGTGAAGTTTGCAACAAAAAGTTTGCTCAAAGTGGTGATAGAAACATTCATATGAAAAGACACCAAAACCTGAAACCTCACATTTGTTGTTACTGCAAAAAGCCTTTCCGATTGGTAAAAGCACTAAGAGCACACGAACGAATTCATACTGGTGAAAAAATATACAGATGCGAATTTTGCCAGGAAAACTTTATGACCTACACCGCATTAGCAACTCACACATTAAAACACCAAGAAGGAACAATAGCAACGCCACAAATTCCAATTCAAATTATCGCCAAGCCAGTTAAAGTGGAAGTTCAAGCTGTAGATTATCACGCAGCACAACCTGTTATTTTGGAAGGAATTATTGAAAATCACGAGCTGCAATTAATCGAAGTGCCAACAAGTATTATGATTTTTAGATAA
Protein Sequence
MDFNTILNKAAYNEICRLCLNIEDTRFYSIFETIENFVISANEALKIFQLIKEEISPDDQLPHQICTKCFNIIKEFLNFKFKTDISQKTLLEAFGLVEHVEQIEDTEPVKPNEKSTKFEFLSIERLEKIEESQNEELFNSEEDSANFEDQEMLEETLDIESDDSFKSTKNTHEVCKTEEKTILKCEICMKQYKKIYNLQRHLRTQHKTADHKKIRQKNIIQQKYSEVCDKCAKRFNNLESYEEHNKARNCVPDQNIKCRFCDQVLETVDLLEEHLKNVHPKGKQHLCPICNKSFPSVSNRNTHIQSHNSENTFSCDQCNQGFKSTVYLNKHKKTHVICENVCPICSQQFDNLAKYEYHLKSHEVKKKYQCQYCDKSYMQFHHKANHERIHTGERPYLCNVCGKDFKQECNFKLHLRIHSGERPFTCEVMDCNKTFIQRGSYMMHLRHHNNERKYQCHHCGKSFIQKSSLTVHLRTHTGEKPFQCTQCNKSFIQAQQLKYHYHSLHNIGDPPSIKKDRGNSTVRAIKDLNKEPRETIHPYVCHLCNRTFKVPSSLSKHLKIHTETRKHVCNQCSSSFKRAEHLRIHINGVHLKQKNYHCEVCNKKFAQSGDRNIHMKRHQNLKPHICCYCKKPFRLVKALRAHERIHTGEKIYRCEFCQENFMTYTALATHTLKHQEGTIATPQIPIQIIAKPVKVEVQAVDYHAAQPVILEGIIENHELQLIEVPTSIMIFR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-