Basic Information

Insect: Parochlus steinenii
Gene Symbol: -
Assembly: None
Location: scaffold607:50315-55457[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8.3e-07 3.3e-05 23.7 1.2 1 23 209 231 209 231 0.98

2 12 0.00042 0.017 15.2 0.6 1 19 238 256 238 260 0.95

3 12 2.1e-05 0.00084 19.3 0.1 1 23 277 299 277 299 0.97

4 12 0.00039 0.015 15.3 1.4 1 23 308 330 308 330 0.97

5 12 0.00018 0.0073 16.3 0.5 1 23 336 358 336 358 0.98

6 12 0.00019 0.0076 16.3 5.0 1 23 364 386 364 386 0.98

7 12 4.1e-07 1.7e-05 24.6 0.4 1 23 392 414 392 414 0.95

8 12 0.022 0.88 9.8 0.5 5 23 424 442 422 442 0.94

9 12 2.1e-06 8.3e-05 22.4 2.2 1 23 448 470 448 470 0.98

10 12 1.7e-07 6.9e-06 25.8 1.8 1 23 476 498 476 498 0.99

11 12 6.7e-06 0.00027 20.8 1.5 1 23 504 526 504 526 0.99

12 12 4.1e-05 0.0016 18.4 3.1 1 23 532 554 532 554 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8.3e-07	3.3e-05	23.7	1.2	1	23	209	231	209	231	0.98
2	12	0.00042	0.017	15.2	0.6	1	19	238	256	238	260	0.95
3	12	2.1e-05	0.00084	19.3	0.1	1	23	277	299	277	299	0.97
4	12	0.00039	0.015	15.3	1.4	1	23	308	330	308	330	0.97
5	12	0.00018	0.0073	16.3	0.5	1	23	336	358	336	358	0.98
6	12	0.00019	0.0076	16.3	5.0	1	23	364	386	364	386	0.98
7	12	4.1e-07	1.7e-05	24.6	0.4	1	23	392	414	392	414	0.95
8	12	0.022	0.88	9.8	0.5	5	23	424	442	422	442	0.94
9	12	2.1e-06	8.3e-05	22.4	2.2	1	23	448	470	448	470	0.98
10	12	1.7e-07	6.9e-06	25.8	1.8	1	23	476	498	476	498	0.99
11	12	6.7e-06	0.00027	20.8	1.5	1	23	504	526	504	526	0.99
12	12	4.1e-05	0.0016	18.4	3.1	1	23	532	554	532	554	0.99

Sequence Information

Coding Sequence: ATGGAATTGAGTTCGGTGGACGTAAAAAACTCGTGCAGAACGTGCCTCCTGCCCAGCATCAATTTGGAATCCATATTTTCATTTCATAATGAATTACAACTAGCACGAATTTTAATGAATTGTGTTCCAATCAATATATCCCAGAACGATGGCCTTTCAGAGAACATCTGTGATGTTTGTAAAACTTCCACCATCTCCGCTTACAGGTTTCAACAGACCTGCATAACTTCAGATCGCCACATTCGTATTTTAATTGATAAAGAAATAAATAAAGACATTGATCTGTCGTCAATTTCGCATATTAAAACAGAAAAAGGTCTTGAAAGTGATGGAGAAGAAAATGAGAAGWTTGAACCATCACTGGCCGTCACCATAATAAACAATGAACTATCCTCTATTATGGACACTTCAGAAATCCAAGACTCTGATGATTTTGATGAGCAATCGAGCATAAGCAATTATAACAGCGATGGTGGTGATTCTGGAGATTCTTCCGGCAAAGATCCCGAGACAAGCATAACTGATGATAAGCCCAAGAAAACGCGCCACATAAAACAACACAAGAAACACAAAAAAGAGGAAGATGAATCTGGCTCMGAATCGGACGAAGACAAAGATCGAAGGTACRATTGTACCGACTGCACTAAAACTTTCAAGAAGCCATCACTTTTAGCTAGACATGTGAAAGTACATGATCCTAACAAACGGCCGCATGAGTGTAATAAATGCCAGAAACGTTTCCCTACWCAAGTGGCYCTTGTTCGACATGACATTTTGCATTCGGATCTCGTAGAGCGATCCACCATTGCACGTACTGAGCCTCAAGATTTTGTATGTGTCGTTTGTCCACGAAATTTCAAGTCTCCAGATTCTCTATCCACTCACATTAAAGCTCACAAGCCAGATGTGAACTTAGCAGAATATAATTGTCGCATCTGTAATGAAGTTTTTGTAAGTTTACATGATCTAGTGAAGCATTCCAAGAACCATATTGAGAATGCCACTCATCAATGTGTAATATGCAATAGAATGTTTACGATGGGAGACGAGCTCATCGATCATATGCTTAGGCACAAAGGCTTGAAACCGCATACTTGTCCAACTTGTGATAAAAGCTTTTTGAAGCTGCACAAACTAAATGTTCACATGCGAACTCATAGCGATGATAGACCATTTCTTTGCCCAGAATGTGGYAAAAGCTTATCTACGAATGAAAATCTAAAGCGCCATTTAATAAGACACTCAGGAGTAAAACCTTTTGGATGTATCCTTTGTCCATCTCGATTTGTCTTCAAAAGTGGTCTAACTTCTCATATGTCCACCCACACAGGTTTAAAACCCTTCGTTTGTGATGTTTGTGGATCCAGCTTCACTAAGTCTAGTTCACTCACCAAACATCATCGAATTCATACTGGTGAGCGTCCTTATGTATGTGAAGTGTGTGGAATGCGATTTAACTCATCAGATCACGTAAAAAGACACATGAGAACACATACGGGGGAACGTCCATATAAGTGCCAGTTTTGTGACCGTAGCTATGCCCAAAGTAATGATTTACTAAAACACACTAGAATTCACGTTGGTGAAAACACATATAAATGCCACCTATGTCAACAAGCCTTCCGATTGCAAGCGCAACTACGAGAACATTATCGAAGCCACTACGACATGCAATTCCAGGAAGACATGGAGATGAAACCTTTAATGGCAACATCTTCTGATGGTTTAATGCCGATGGGTCATTTACCCAACATGGCTAGTATTTCTGCAATCAGTGCGGAACATAATCGAGCTAGAGAAGCCCAGATGCAGCACTTTGCTCAATACGAGTTGATTAAGAATGAGTCCAAGGAGAGTCAAGAGATTCACGAGCATCAGCAAGATGACCAGAAGTCGTATCACGATCTTTCGATTGCCAAAAAGCAAAAGTTGGAATGA
Protein Sequence: MELSSVDVKNSCRTCLLPSINLESIFSFHNELQLARILMNCVPINISQNDGLSENICDVCKTSTISAYRFQQTCITSDRHIRILIDKEINKDIDLSSISHIKTEKGLESDGEENEKXEPSLAVTIINNELSSIMDTSEIQDSDDFDEQSSISNYNSDGGDSGDSSGKDPETSITDDKPKKTRHIKQHKKHKKEEDESGSESDEDKDRRYXCTDCTKTFKKPSLLARHVKVHDPNKRPHECNKCQKRFPTQVALVRHDILHSDLVERSTIARTEPQDFVCVVCPRNFKSPDSLSTHIKAHKPDVNLAEYNCRICNEVFVSLHDLVKHSKNHIENATHQCVICNRMFTMGDELIDHMLRHKGLKPHTCPTCDKSFLKLHKLNVHMRTHSDDRPFLCPECGKSLSTNENLKRHLIRHSGVKPFGCILCPSRFVFKSGLTSHMSTHTGLKPFVCDVCGSSFTKSSSLTKHHRIHTGERPYVCEVCGMRFNSSDHVKRHMRTHTGERPYKCQFCDRSYAQSNDLLKHTRIHVGENTYKCHLCQQAFRLQAQLREHYRSHYDMQFQEDMEMKPLMATSSDGLMPMGHLPNMASISAISAEHNRAREAQMQHFAQYELIKNESKESQEIHEHQQDDQKSYHDLSIAKKQKLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -