Pste001464.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parochlus steinenii
Gene Symbol
-
Assembly
None
Location
scaffold1072:5744-12018[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.0011 0.044 13.9 0.5 1 23 161 183 161 183 0.99
2 22 0.003 0.12 12.5 1.5 2 23 189 210 188 210 0.95
3 22 0.0023 0.094 12.8 4.4 2 23 216 239 213 239 0.95
4 22 0.0048 0.19 11.8 2.7 1 23 245 269 245 269 0.98
5 22 1.1e-05 0.00043 20.2 3.5 1 23 275 298 275 298 0.96
6 22 0.0045 0.18 11.9 0.2 2 23 358 380 357 380 0.95
7 22 0.15 5.9 7.2 1.8 1 23 578 601 578 601 0.89
8 22 0.00023 0.0091 16.0 2.7 1 23 608 631 608 631 0.94
9 22 0.0051 0.21 11.8 1.4 2 23 646 667 645 667 0.95
10 22 0.00025 0.01 15.9 1.9 1 23 672 696 672 696 0.97
11 22 1.3e-05 0.0005 20.0 2.9 1 23 702 726 702 726 0.98
12 22 0.0021 0.085 13.0 2.0 1 23 732 755 732 755 0.96
13 22 0.063 2.5 8.3 0.2 3 23 818 839 816 839 0.89
14 22 1.8e-05 0.00072 19.5 2.3 1 23 847 869 847 869 0.98
15 22 0.002 0.079 13.1 6.9 1 23 873 895 873 895 0.99
16 22 3.6 1.5e+02 2.8 1.6 2 21 903 922 902 923 0.89
17 22 0.00081 0.033 14.3 2.0 3 23 932 954 931 954 0.93
18 22 0.0027 0.11 12.6 2.9 1 23 958 980 958 980 0.98
19 22 9.8e-05 0.0039 17.2 1.2 2 23 986 1007 985 1007 0.97
20 22 0.0014 0.055 13.6 1.2 2 23 1013 1036 1012 1036 0.94
21 22 0.00019 0.0075 16.3 2.9 1 23 1042 1066 1042 1066 0.98
22 22 0.00022 0.0089 16.1 0.3 1 23 1072 1095 1072 1095 0.95

Sequence Information

Coding Sequence
ATGCTGGCTAAATGCCAGCAGTTTTTGATTTTTATGACTGTGTCTGCAAATAATTTTTTGTCAGGATCTGTTAAGGGCAATCAAAGATCTCTGCATACCTGCCTCTTAAATATGAATATGAATTTCAAAGTGTGCAGACCTAAAGCAAAAAAAGTGGAAGATTTATTCTTGAGATTTGGTCGGGTGATTGTGAAAAAGAAAACTGTCTCCTTTTTGGCTACAAAAAATCAAATTGAACGAAAAAATGTGAAGGCAACTTTGGAAAGGCGGTTGAAGGTGCCAAAAAAGCTTCTAATCATGAGAACAAAAAAAAGATCTCAAGTACTAATAGTATCAGAAGCTGGAAAAAAAGTAATTCTCGTTATGATGCTGCCTAAATCTTTCATTCAATTTGCATCCATAAAATATGTTCTGATGGACAAGTTTATGATGCTTTTTGGAGAAATTGTTGAGATTGGCAAACAAATTGTGGAAAATCGGTTCAAGTGCTCAATTTGTAATTATAGAGGAGATGGTCCTGGTACCTTAAAAAAACATCAATCGACACATCGAGGAGAAGAACTGAAATGCAAGATTTGTGGAATTTTTTCCAAGACAAAAAAACTATTAGAAATTCATCTGCATGAACATCCTGTTTGTGACAAAAAGTGCAAGCATCCAAACTGTGGAAGAGCTTTCAGTAATAAATCCATGATGAGACAACATGAAAAAATTCATCTAAATGAACGTCTATTCAAATGCGAGTTCAAGGGTTGCGATAAAGCATTTAAACAGGAGCATATTTTAAAGACGCATCAGTTATCTCACACTGATTTAAGACTTTACAAATGCAACTATTGTGTGAAAGATTTTAAAACCAAAAGCCATCTGAGTAAACATATTGGAAGAGTCCATAGAACTCTTCAGAATGACAGCTTAAAGCAAAATCTAGAAAGGGAAAGTCAGAAATTTCAAAGACTGAAACTCGAACTTGAAAATCTGACCAAAAGTGATCCTTTGTGGTATAAAAAAATGTCAACAGAGGAGATTATCGCAAAAACACCACACAATAAAAGAATTGAGAAAAGTGTCGAATGCCCCATCTGTAGCAAAATGCTAGTTTCAATTTCTTGTCTGAAAATCCACATCAAGGCAATGCATCTAATTTATCATATTCTCGGCAACATTTTTTGCTTGACCAAGTTTCGTGGGACAGAAAATATGAATTTCAAAGTGTGTAGACCTAAAGCAAGAAGAGTGGAAGATTTATTCTTGAGATTTGGTCGAGTGATTGTGAATAGAAAGACTGTCTCTTTTTTGGCTACAAAAAATCAAATTGAACGAAAAAATGTGAAGGCAACTTTGGAAAGGCGCTTGAAGGTGCCAAAAAAGCTTCTAATCATGAGAAGAAAAAATAAATCTCAAGTATTAATAGTATCAGAATCTGGAAAAAAAGTAATTCTCGTTATGAAGATGCCTAAATCTTTCATTCAATTTGCATCCATAAAATATGTTCTGATGCACAAGTTTATGAAGATTTTTGAGGGAATTATTGAGATTGACAAACAAATTGTGGACTTGAAGCTTGTGAAGGAGGAACTAGCTGATGAAGTACTGATTACAGATATTACTGCTAAGAATGATGATTTAATTGAAATCGCACCAGATACAATTGAAAGCTCCATGAATACAAATCTACCTGAAATATCTTTTCACCAAAAAACATCCGAGAAATCTACAAAAAGAATGAAATTTCAATGTAAATTATGTCAAAAAGTCTTCTTATCAATATCAGGTCTATACCATCACAATGCAAGAAATCACTCAACCAAAATTCGCAGTTATCAATGTTTGATCTGTGAAAAGAAATTGACTTCAAAACAAAACTTAAAAAGACACATCTACCATGTGCACTCAACAGAAAAACATGAATTGAACCATCGAAGCAGCGATTTAAAGTGTAAGATATGTGGAACATTTTTAAAAACAAGGAATCTTTTAGAAATTCATCTACATGATCATCCTGTTTGCAACTTTAAGTGTCGGTATCCAGATTGTGGAAGAGCTTACAAATCTGAGTTTCATCTGAAAACTCATCAAATTGTCCACCAAACTGAACGTGCATTTCAATGTGATTTTAAAGGTTGCAACAAGGCTTTTAAAAGCAAAAAAAATTTCAAAGTGCATCTTCAAACTCATAGTGATTTGGAACCTTACAATTGTAAAATTTGTAAAAAAGATTTCAAAAATATGAATCAGCTGGCTTATCATAACAAACGAATACATTATAAAACTCAAACAGTTGATACCTTGAAAGATATTTTGGAAAGAAAAAAGCATGAAAATCAAAATTTACAAAACCAAGTTAAAATTTGGACCAAAAATGATCCTTTGTGGTATAAAAAATTTACAGTTGATGAGATTTTAACAAAAACACCATACATCAGAGTTGGAAATGACTCAAGTATTGAATGCATTATTTGTTTAAATATATTCAAACAAAAAAGTAGTTTGAAAGGTCACATTAATAAAGTTCATTATTCAAACGACTTACAAACATTTCAGTGTGATTATTGTGGAAAGAAGTTAAATAATAAAGATTCTTTGCACACTCACCTTATGGTTCACACGGATAAATATAAGTGCTCCATATGTAATAAAAGATGCCACGAATCGAGACAATTACGAAATCATCTTCAAACTCATGAAATCAATATTCCACGAATCAAATGTCCTGATTGCATTAAAACCTTCAAATGTGAGAAGAGATTGAAATTGCATCAACAACTGAAAGCTGACAATATAAGTGTTARGTGCACTGCAGAAAATTGTGGAAAGTATTTTAAAAATAAAAAAAATCTGATGCTTCATTTCAACAGACATACAGATCGGTTCAAGTGCTCGATTTGTAATTATCGAGGTACTAGTCGAAATCGATTGAAGAGACATCAATCAAGTCATCGAGGAGAAGAACTGAAATGCAAGATTTGTGGACTCTTTTTCGTGACAAAAAATGCATTAGAAATTCATCTGCATAAACATCCTGTTTGTGACATAAAGTGCAAGCATCCAAACTGTGGAAGAGCTTTCAGAGTTGAATCTATGTTGAGAAAACATGAAACAATGCATCTAACTGAACGTCCATTCAAATGCGAGTTCAAGGATTGCAAGAAAACATTCAAAATCAAAATTGAATTAAATAAGCATCAATCAACTCACAATGAAATAAAAGTTTACAAATGCAAATATTGTGTGAAAGATTTTAAAACCATAAACGATCTCAGAATTCATATTGGAATAATTCATAAAACTCATCAAAATGAAAGCTTGAAAGAAATTTTGGCAAGAGAAAGTCAAAAATTCCAGAGACAGAAACAGGAACTTGAAAATCTGACCAAAAATGATCCTTTGTGGTATAAGAAAATGTCAATTGAAGAG
Protein Sequence
MLAKCQQFLIFMTVSANNFLSGSVKGNQRSLHTCLLNMNMNFKVCRPKAKKVEDLFLRFGRVIVKKKTVSFLATKNQIERKNVKATLERRLKVPKKLLIMRTKKRSQVLIVSEAGKKVILVMMLPKSFIQFASIKYVLMDKFMMLFGEIVEIGKQIVENRFKCSICNYRGDGPGTLKKHQSTHRGEELKCKICGIFSKTKKLLEIHLHEHPVCDKKCKHPNCGRAFSNKSMMRQHEKIHLNERLFKCEFKGCDKAFKQEHILKTHQLSHTDLRLYKCNYCVKDFKTKSHLSKHIGRVHRTLQNDSLKQNLERESQKFQRLKLELENLTKSDPLWYKKMSTEEIIAKTPHNKRIEKSVECPICSKMLVSISCLKIHIKAMHLIYHILGNIFCLTKFRGTENMNFKVCRPKARRVEDLFLRFGRVIVNRKTVSFLATKNQIERKNVKATLERRLKVPKKLLIMRRKNKSQVLIVSESGKKVILVMKMPKSFIQFASIKYVLMHKFMKIFEGIIEIDKQIVDLKLVKEELADEVLITDITAKNDDLIEIAPDTIESSMNTNLPEISFHQKTSEKSTKRMKFQCKLCQKVFLSISGLYHHNARNHSTKIRSYQCLICEKKLTSKQNLKRHIYHVHSTEKHELNHRSSDLKCKICGTFLKTRNLLEIHLHDHPVCNFKCRYPDCGRAYKSEFHLKTHQIVHQTERAFQCDFKGCNKAFKSKKNFKVHLQTHSDLEPYNCKICKKDFKNMNQLAYHNKRIHYKTQTVDTLKDILERKKHENQNLQNQVKIWTKNDPLWYKKFTVDEILTKTPYIRVGNDSSIECIICLNIFKQKSSLKGHINKVHYSNDLQTFQCDYCGKKLNNKDSLHTHLMVHTDKYKCSICNKRCHESRQLRNHLQTHEINIPRIKCPDCIKTFKCEKRLKLHQQLKADNISVXCTAENCGKYFKNKKNLMLHFNRHTDRFKCSICNYRGTSRNRLKRHQSSHRGEELKCKICGLFFVTKNALEIHLHKHPVCDIKCKHPNCGRAFRVESMLRKHETMHLTERPFKCEFKDCKKTFKIKIELNKHQSTHNEIKVYKCKYCVKDFKTINDLRIHIGIIHKTHQNESLKEILARESQKFQRQKQELENLTKNDPLWYKKMSIEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-