Pste010942.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold557:70113-77515[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0024 0.098 12.8 5.2 1 23 209 231 209 231 0.98 2 18 0.01 0.42 10.8 10.0 1 23 237 259 237 259 0.96 3 18 4.8e-05 0.0019 18.2 0.9 1 23 267 289 267 289 0.96 4 18 3.8e-05 0.0015 18.5 0.2 1 23 295 317 295 317 0.97 5 18 0.00025 0.01 15.9 2.5 1 23 322 344 322 344 0.98 6 18 0.0012 0.05 13.7 0.0 1 23 350 373 350 373 0.96 7 18 0.00065 0.026 14.6 0.1 1 23 442 464 442 464 0.97 8 18 0.0024 0.098 12.8 5.2 1 23 666 688 666 688 0.98 9 18 0.01 0.42 10.8 10.0 1 23 694 716 694 716 0.96 10 18 0.00014 0.0057 16.7 7.9 1 23 722 744 722 744 0.99 11 18 0.00078 0.031 14.3 1.1 1 23 750 772 750 772 0.95 12 18 4.8e-05 0.0019 18.2 0.9 1 23 778 800 778 800 0.96 13 18 3.8e-05 0.0015 18.5 0.2 1 23 806 828 806 828 0.97 14 18 0.00025 0.01 15.9 2.5 1 23 833 855 833 855 0.98 15 18 0.0012 0.05 13.7 0.0 1 23 861 884 861 884 0.96 16 18 0.00065 0.026 14.6 0.1 1 23 953 975 953 975 0.97 17 18 0.059 2.4 8.4 3.7 1 23 1125 1147 1125 1147 0.95 18 18 0.00049 0.02 15.0 2.1 1 23 1157 1179 1157 1179 0.97
Sequence Information
- Coding Sequence
- ATGAATGAAATGACCTGGAATAAATTTAAAGTGAAGTTCTGTCGCCTTGTTGTAACTAGTATTAAAAAAGCGTCTTTGCTTGAAATTCAAGATGGACGCGGCGTAGCGATGAATCGCCGGATGATCGTGGTAAACGAGCAGCAAATGTCTCAAAACACTTCTCAAGCTCAGCGCGTTATTACTACCGCGGGAACTTCAGTAGTCTCGAACAGTTTTCAAGATGCCAAACCGCAAACGGTGTACACAACAGACAAGGGAACGCATTTTATGACTCCAATTGGATCATTACAGCTTACAGCAGAGGAGTGCAATGAAATTTTAATGAAAAGAGCTGTAGCTGCAGTTCAAGCAAACAACCAGCAGCACACAATCACAACGACTTCATCATCATCTGATGGCCACAATGCTCCAATTTCTATTCAAGTTCAAAAAGTTATYCAAGCTCTGGAAGATAGTGACGATCCAATGGTTGCACCAACACACTCCCTGAAAATGGAGCCCAATATGAGTGTTTCACCAGATACTATTGAAGTTATTCAATTTACTGACAACACAAGTAAACCAATCGTTTCGACCGTGAAAAAGAACAATAAAAATAACACAGTTGGAGCTAAAGAGCGTCCATATTCTTGCAATGAATGCGACAAGACTTTTTTGCTTAAACATCATTTAACAACTCATGCTCGTTCTCATACAGGTGAGAGACCACACGTTTGTGTTCACTGTGGCAAGGATTTCAGCCACAAGCATTGCCTTAACACACATTTGTTACTGCACACGTCTGAAAGGCCGCGTCCATTCATATGCGAAGATTGCGGCGAGTCTTTTGCTCAAAAAGATCATTTAGATATGCATTCTAGATTCCACGGATCCGTTAATCCATTTGCCTGTGCTGACTGTGGAGCRACTTTTGCTCGTAAATTTCAACTTATTAACCACGGGAAAACTCATGGKCGAGTGCCACATTCTTGTACYATTTGYGGAMGGGAATTCTTACAAAAACGCACGCTTGCCACCCACATGAAAACACATACTGGAGAAGCATCTTTCCCTTGTTTAGCGTGTGGTGAAGGTTTTGTTTCCAAAGCAGAGTTAAATTCCCACAATCGGACCGTTCATGGTGGAGTTAATCCCAATGCTCCAAATACAACCATTGTCAGTAATAAAAATGCAAGTGTCATCCAACAGCAACAAAGCCAACAAGCCCAACAGGCCATATTACAGTACGTTCAACAGCATCAACAGCCTCACACAGTTAAAGTAATGGGAAATACCCAACAAATTATCACAAAYAATCAGCAGGATGCTCCTCCTCGTCTTCAATATGCTTGCAGAGAGTGTGGTAGTGTATTCAATTCTCGCGAAGGATTGGCACTACATTTGCGTTTGCATTCTGGTGACAAAAGCTTAATTAACGACTTATGCGCCTTAACCGCTTCAATTCCTGGTCATATGTTCCAAGGTGTTGGCGGCGTAGCGATGAATCGCCGGATGATCGTGGTAAACGAGCAGCAAATGTCTCAAAACACTTCTCAAGCTCAGCGCGTTATTACTACCGCGGGAACTTCAGTAGTCTCGAACAGTTTTCAAGATGCCAAACCGCAAACGGTGTACACAACAGACAAGGGAACGCATTTTATGACTCCAATTGGATCATTACAGCTTACAGCAGAGGAGTGCAATGAAATTTTAATGAAAAGAGCTGTAGCTGCAGTTCAAGCAAACAACCAGCAGCACACAATCACAACGACTTCATCATCATCTGATGGCCACAATGCTCCAATTTCTATTCAAGTTCAAAAAGTTATYCAAGCTCTGGAAGATAGTGACGATCCAATGGTTGCACCAACACACTCCCTGAAAATGGAGCCCAATATGAGTGTTTCACCAGATACTATTGAAGTTATTCAATTTACTGACAACACAAGTAAACCAATCGTTTCGACCGTGAAAAAGAACAATAAAAATAACACAGTTGGAGCTAAAGAGCGTCCATATTCTTGCAATGAATGCGACAAGACTTTTTTGCTTAAACATCATTTAACAACTCATGCTCGTTCTCATACAGGTGAGAGACCACACGTTTGTGTTCACTGTGGCAAGGATTTCAGCCACAAGCATTGCCTTAACACACATTTGTTACTGCACACGTCTGAAAGGCCGTATCAATGTGGCGAATGCAAAAAATGCTTCACTTTGAAGCATCATTTACTCACTCATTTAAGAGTACACACTCGTGATTGTCCATTTGTTTGCCAGGAATGCGGAAGAGCTTTTCCACTGAAACGACATTTGGTCACTCATGGCAAATTTCATGCTGGAGAGCGTCCATTCATATGCGAAGATTGCGGCGAGTCTTTTGCTCAAAAAGATCATTTAGATATGCATTCTAGATTCCACGGATCCGTTAATCCATTTGCCTGTGCTGACTGTGGAGCRACTTTTGCTCGTAAATTTCAACTTATTAACCACGGGAAAACTCATGGKCGAGTGCCACATTCTTGTACYATTTGYGGAMGGGAATTCTTACAAAAACGCACGCTTGCCACCCACATGAAAACACATACTGGAGAAGCATCTTTCCCTTGTTTAGCGTGTGGTGAAGGTTTTGTTTCCAAAGCAGAGTTAAATTCCCACAATCGGACCGTTCATGGTGGAGTTAATCCCAATGCTCCAAATACAACCATTGTCAGTAATAAAAATGCAAGTGTCATCCAACAGCAACAAAGCCAACAAGCCCAACAGGCCATATTACAGTACGTTCAACAGCATCAACAGCCTCACACAGTTAAAGTAATGGGAAATACCCAACAAATTATCACAAAYAATCAGCAGGATGCTCCTCCTCGTCTTCAATATGCTTGCAGAGAGTGTGGTAGTGTATTCAATTCTCGCGAAGGATTGGCACTACATTTGCGTTTGCATTCTGGTGACAAAAGCTTAATTAACGACTTATGCGCCTTAACCGCTTCAATTCCTGGTCATATGTTCCAAGGTGTTAATTCAATTAATTTGCCAACGGGTACAACTTTTGTGACTACCAATCAAGGTGGAAATTCTTCATCCCCAGTGCCAGTTCAAATAATTACTTCAACTGGTGAAGTTATGAATTTACATCAACATCAAAGTCCACAGCATTCRTCCCAAGGTGGTCAGCAACAACAAATTCAGATCCATCATCAAGGTACCACACAGCAGCAAGTTCAAGTTGTCCATCAAGGATCTCACCAACAGCAACAACAAGTTCAAGTGGTGCAGCAGCAATCCACTCCTCAAAAATTGGTTCAACARCAACAAATTCGTCAAGTTGTTCAACAAACAACCCCAACTCAAAATGTTGTTCAGGTTGCCACTCAACAGAAGGCTAAAACACATTTCTGTCAGAGTTGTGGAAAAAGCTTCGTTGCTAAGCATGGTTTGGTACTTCATAATAAACGYCATCCTGATGGAAGTTGTACTTTACGTTCACACGTTTGTGCTGAATGTGGAAAAGCTTTTTTGCAGAAAAATCATTTAATATTGCATCAACGTCAGCATTTGGAACAAAATCAACGTGGAAAACAGCAACCTCAACAACAGCAACAAATGGAAGCTCAAGTACAAGCTGGCCAGAGCACCGATGGTCTCCAGCAACAGTCTCAGAACAACCAGATCCTCACTACACGTGGCAATTTGGTCATGGCCAACCAGCAAGTTCATCTTCAAGTAATGCCCGACAACACTTAA
- Protein Sequence
- MNEMTWNKFKVKFCRLVVTSIKKASLLEIQDGRGVAMNRRMIVVNEQQMSQNTSQAQRVITTAGTSVVSNSFQDAKPQTVYTTDKGTHFMTPIGSLQLTAEECNEILMKRAVAAVQANNQQHTITTTSSSSDGHNAPISIQVQKVIQALEDSDDPMVAPTHSLKMEPNMSVSPDTIEVIQFTDNTSKPIVSTVKKNNKNNTVGAKERPYSCNECDKTFLLKHHLTTHARSHTGERPHVCVHCGKDFSHKHCLNTHLLLHTSERPRPFICEDCGESFAQKDHLDMHSRFHGSVNPFACADCGATFARKFQLINHGKTHGRVPHSCTICGREFLQKRTLATHMKTHTGEASFPCLACGEGFVSKAELNSHNRTVHGGVNPNAPNTTIVSNKNASVIQQQQSQQAQQAILQYVQQHQQPHTVKVMGNTQQIITNNQQDAPPRLQYACRECGSVFNSREGLALHLRLHSGDKSLINDLCALTASIPGHMFQGVGGVAMNRRMIVVNEQQMSQNTSQAQRVITTAGTSVVSNSFQDAKPQTVYTTDKGTHFMTPIGSLQLTAEECNEILMKRAVAAVQANNQQHTITTTSSSSDGHNAPISIQVQKVIQALEDSDDPMVAPTHSLKMEPNMSVSPDTIEVIQFTDNTSKPIVSTVKKNNKNNTVGAKERPYSCNECDKTFLLKHHLTTHARSHTGERPHVCVHCGKDFSHKHCLNTHLLLHTSERPYQCGECKKCFTLKHHLLTHLRVHTRDCPFVCQECGRAFPLKRHLVTHGKFHAGERPFICEDCGESFAQKDHLDMHSRFHGSVNPFACADCGATFARKFQLINHGKTHGRVPHSCTICGREFLQKRTLATHMKTHTGEASFPCLACGEGFVSKAELNSHNRTVHGGVNPNAPNTTIVSNKNASVIQQQQSQQAQQAILQYVQQHQQPHTVKVMGNTQQIITNNQQDAPPRLQYACRECGSVFNSREGLALHLRLHSGDKSLINDLCALTASIPGHMFQGVNSINLPTGTTFVTTNQGGNSSSPVPVQIITSTGEVMNLHQHQSPQHSSQGGQQQQIQIHHQGTTQQQVQVVHQGSHQQQQQVQVVQQQSTPQKLVQQQQIRQVVQQTTPTQNVVQVATQQKAKTHFCQSCGKSFVAKHGLVLHNKRHPDGSCTLRSHVCAECGKAFLQKNHLILHQRQHLEQNQRGKQQPQQQQQMEAQVQAGQSTDGLQQQSQNNQILTTRGNLVMANQQVHLQVMPDNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -