Pste001498.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold138:183159-186159[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0066 0.26 11.4 0.8 2 23 4 26 3 26 0.92 2 23 0.00018 0.0073 16.3 3.0 1 23 32 54 32 54 0.98 3 23 2.6e-06 0.0001 22.1 1.6 1 23 60 82 60 82 0.97 4 23 1.3e-05 0.00052 19.9 1.5 1 23 88 110 88 110 0.99 5 23 0.17 6.7 7.0 0.4 2 19 117 134 116 135 0.93 6 23 3.9e-05 0.0015 18.4 0.2 2 23 146 167 145 167 0.96 7 23 0.00014 0.0056 16.7 1.7 2 23 181 203 180 203 0.96 8 23 0.00047 0.019 15.0 0.7 2 23 212 233 211 233 0.94 9 23 0.002 0.079 13.1 1.0 3 23 407 428 405 428 0.92 10 23 0.034 1.4 9.2 3.8 1 23 433 456 433 456 0.96 11 23 0.00017 0.0067 16.4 0.7 1 23 463 486 463 486 0.97 12 23 0.021 0.86 9.8 0.4 2 23 496 518 495 518 0.93 13 23 0.62 25 5.2 5.7 1 23 524 547 524 547 0.92 14 23 0.00015 0.0062 16.6 0.8 1 23 562 585 562 585 0.93 15 23 0.048 1.9 8.7 2.1 1 23 591 614 591 614 0.97 16 23 0.71 29 5.0 0.2 2 23 623 644 623 644 0.96 17 23 0.0014 0.057 13.5 0.7 1 23 648 670 648 670 0.98 18 23 0.00053 0.021 14.9 0.8 3 23 682 702 680 702 0.96 19 23 2.6e-05 0.001 19.0 0.8 1 23 708 730 708 730 0.97 20 23 0.0057 0.23 11.6 1.2 2 23 735 756 735 756 0.98 21 23 0.00019 0.0076 16.3 0.3 1 23 762 784 762 784 0.98 22 23 0.00059 0.024 14.7 2.5 1 23 791 814 791 814 0.94 23 23 0.0028 0.11 12.6 3.4 1 20 820 839 820 841 0.94
Sequence Information
- Coding Sequence
- ATGGTGGTAATGTGTGAGCAATGTGGCAAATCTTTCGGAAAGCCTCACAAACTGAAATTTCACATAGATAGTGTTCATTTGAAAATTCGAAATTTTAAATGCGAGCAATGTGGTGAAACTTGTGTTAATCGAGCAAAGCTGCAATATCATATGTATAAGCATACAGACGTGAGAGATTTTAATTGCGAAGAGTGTAACAAAAGCTTCAAAACCAGGAGTGACCTATATCAGCATTATGAGGTTCATGATAAAGGAAAAACATTCAAATGCCAGGAGTGTACTGAAGTATTTAAAAAGAGAGGCCAGCTAGAAAATCATGTTAAAAAACATACAAAAAATGTCGAGACTACTTGTAAAGTTTGCAACAAAGAGTTCCTTAATCCTACTCGTTTAAAAAACCATGTTTGGAATATGCACAAGAAAAATCCTGAATTGCCTTGTCCACTCTGTGGAAAGAAATACTACACAACATCAACTTTAGAGAAGCACGTCGAAAGTCATGCAATTATACAACTACATAAAGGACCTGCAGATGCCATGAAGTGTGCCGAATGTCCAAGACATTTTAAAAGCACAGCAAACTTAAACAAACACACCTTAAAGGCTCATCAGGGAGGAGCTATTATTGGTTTAATTTGTGATTATTGTGGTAAACACTTCCAGAAGAAGATTGGTCTTATAAAGCACATAGTGCAGCATAAGAAAGTAACTCAAAGTTTTTTACATCATAAAAAAAATTTTGGACCGAAAAGTCTAATTCATACTGGAGTTATAAATTATCAAAAAAACGAGTCAATCAAGAAGGAACTGGAATTGGAAGAAAATACTAGAATAGAAACTTTATCGTTTGTTTTTGATGATGTGAATGAGGTAAAAGTTGAAGCTAATCCTTTAATGCTTCCATATGAGCTTGACATTAAAGAAGAAGTAATTGATGATGATCACCAAATTGAAAATTCATCCATAAAGGAAGAATATTTTGATACATATGATCCACCTATAGAACCTCAAGTTCTCCTTGATGAAATGAAAACAGAAATAGCAGAAAAATTTCCATCGGAATTAGATCTCAAATTTGAAATTTCACCAACTTTGGAAGAACTTGATATTAGAGAATCAAGGTTTGAGACAAGAATTAATAAAACAAAGTCCAACCATGAACCGTCAGTTATATCGACAAAGAAAGATAAACTTTCTAAAACAACTATGGACAAATGTTGTAGTATCTGTGATAATTCATTTCCTCTTAAAAAATTGCTTAAAGCACATATGATCGAGATTCATGGTGGCAATCGTCATAAGTGTACATTTTGTGATCGAGTATTTCTTTATAAATCTCAGCTTGATATCCATWCTAAATCCAGCCACGAACCAAGAGATCAAGAATTCAACTGTAAAATATGYGTYAATTCTTTCGCCACTGAAGAATACCTTCAAAGACATGTAAGAAGAATGCATATGGGTCACTTGACACCAGATCAAATTTACTGTTTCATTTGTTTTGAGCAATTCCCAACTAARATTGAATTRAAAGAGCATACCTTAAACKTGCATAACAAAGAATCAAAATTCGATTGCGACCAATGTGAACTTTGTTTCATGTCAAGCCAAGCTTTACATCATCACAAAATTAATWCACACAACGAAAAAAATGGTAAAGTTCCGAAAAGAGTTGGCGGTAAATTTCCTTGCCATCAATGTGGAGTCAAGTATAAATATAACAGCACTTTGAAACTTCATATTGAAGCTATTCATGAGAAAAATAACAAGCACAAGTGTCTCATCTGTGAAGAAGGATTTTTAACGCCTTATCATGTCACCAAACATGTCAAAAAAGTTCATGAAGGAGGATTGAAGCTTACTAGAACTTGTGGTGTATGCAAATCAGACTTTCGGCTTGCTCAAGAGTTTTTTGACCATATAGCAAGTCATGAGGATTGTTTCATCTGCAAACTGTGCGGAGAAAACCAGACAGATAAAAGAAGTTTAGAGAAACATCAAAAGGTTCACAGAAAAGTTGATGAGAAGTATAAAAAAATAATTTGCGATATTTGCGGCCTTCGTTTTGGGATAAGGAGCCATCTTTTGATCCACATGCACATGCACAGCGATGCCAAAAACTATTTTTGTGAAAAATGTGGCAAGACATTCAGATTTCCTTCAGCACTTGGCTTGCACAAAAAAATACACGATAAAAAGAGAAAATGCAATTTTTGTAGTAAATTATTTGCCACAAAGACAAGCCTTGATTTACATGAAAGAATCCACACGGGTGAAAAGCCTTATTTTTGTCAGCTTTGTGGAGCACGATTTGCGGCTCCCGGAAATTATAATTATCACATGAGGAAGCATAATGGAACTCTGCAGCAACATCCCTGTACCATCTGCGAAAAAACATTTGATTCCAAGTTCTTTTTAACTTCACATCTCCTTCAGCAACATTCAAGTTCTAAAGAATTTAAATGTAACTTATGTCACCAAGAATTTAAATTTTTGAAGCAGCTAAACCGCCATAAAGATACAAAGTGTCCAGCAAATATTACGATTTTGATGCAATAA
- Protein Sequence
- MVVMCEQCGKSFGKPHKLKFHIDSVHLKIRNFKCEQCGETCVNRAKLQYHMYKHTDVRDFNCEECNKSFKTRSDLYQHYEVHDKGKTFKCQECTEVFKKRGQLENHVKKHTKNVETTCKVCNKEFLNPTRLKNHVWNMHKKNPELPCPLCGKKYYTTSTLEKHVESHAIIQLHKGPADAMKCAECPRHFKSTANLNKHTLKAHQGGAIIGLICDYCGKHFQKKIGLIKHIVQHKKVTQSFLHHKKNFGPKSLIHTGVINYQKNESIKKELELEENTRIETLSFVFDDVNEVKVEANPLMLPYELDIKEEVIDDDHQIENSSIKEEYFDTYDPPIEPQVLLDEMKTEIAEKFPSELDLKFEISPTLEELDIRESRFETRINKTKSNHEPSVISTKKDKLSKTTMDKCCSICDNSFPLKKLLKAHMIEIHGGNRHKCTFCDRVFLYKSQLDIHXKSSHEPRDQEFNCKICVNSFATEEYLQRHVRRMHMGHLTPDQIYCFICFEQFPTKIELKEHTLNXHNKESKFDCDQCELCFMSSQALHHHKINXHNEKNGKVPKRVGGKFPCHQCGVKYKYNSTLKLHIEAIHEKNNKHKCLICEEGFLTPYHVTKHVKKVHEGGLKLTRTCGVCKSDFRLAQEFFDHIASHEDCFICKLCGENQTDKRSLEKHQKVHRKVDEKYKKIICDICGLRFGIRSHLLIHMHMHSDAKNYFCEKCGKTFRFPSALGLHKKIHDKKRKCNFCSKLFATKTSLDLHERIHTGEKPYFCQLCGARFAAPGNYNYHMRKHNGTLQQHPCTICEKTFDSKFFLTSHLLQQHSSSKEFKCNLCHQEFKFLKQLNRHKDTKCPANITILMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -