Pste003769.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold230:12732-16562[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.025 0.99 9.6 0.2 2 23 4 26 3 26 0.94 2 28 0.0014 0.057 13.5 3.8 1 23 32 54 32 54 0.96 3 28 1.7e-05 0.00068 19.6 2.6 1 23 60 82 60 82 0.96 4 28 0.00021 0.0082 16.2 0.2 1 23 88 110 88 110 0.99 5 28 8.2e-06 0.00033 20.6 0.7 2 23 122 144 121 144 0.95 6 28 0.00068 0.027 14.5 0.5 1 23 150 172 150 172 0.92 7 28 0.3 12 6.2 0.4 1 23 205 228 205 228 0.96 8 28 0.00026 0.011 15.8 0.2 2 23 235 257 234 257 0.95 9 28 2.3 93 3.4 2.4 1 23 266 289 266 289 0.94 10 28 0.011 0.44 10.7 1.4 1 21 294 314 294 315 0.95 11 28 9.1e-06 0.00037 20.4 1.5 1 23 340 363 340 363 0.97 12 28 0.38 15 5.9 5.2 1 23 369 392 369 392 0.96 13 28 1.5e-05 0.0006 19.7 0.4 1 23 398 420 398 420 0.98 14 28 4.6 1.9e+02 2.5 0.2 1 13 426 438 426 439 0.88 15 28 2.6e-05 0.0011 19.0 3.1 1 23 497 520 497 520 0.96 16 28 0.0032 0.13 12.4 1.3 2 23 541 563 540 563 0.95 17 28 5.7 2.3e+02 2.2 0.2 2 23 575 597 574 597 0.90 18 28 0.0035 0.14 12.3 3.8 1 23 658 681 658 681 0.89 19 28 0.0089 0.35 11.0 0.8 3 23 689 710 687 710 0.92 20 28 0.00063 0.025 14.6 1.0 3 23 748 769 746 769 0.93 21 28 0.015 0.62 10.3 0.9 3 23 779 800 777 800 0.95 22 28 0.053 2.1 8.6 0.3 3 23 810 830 809 830 0.97 23 28 2.7 1.1e+02 3.2 0.5 1 23 834 856 834 856 0.89 24 28 0.0062 0.25 11.5 0.2 2 23 867 888 866 888 0.95 25 28 1.6e-06 6.3e-05 22.8 1.8 1 23 894 916 894 916 0.98 26 28 4.3e-05 0.0017 18.3 0.5 1 23 920 942 920 942 0.98 27 28 0.0083 0.33 11.1 0.1 1 23 948 970 948 970 0.98 28 28 0.013 0.53 10.5 1.8 1 23 976 998 976 999 0.96
Sequence Information
- Coding Sequence
- ATGTCAGTAGTTTGTGAGCAGTGCGGCAAGTCCATGAAATCTGGCAAAACTTTGAAGAATCATGTAGAATCAGTGCATGAGAAGATTCGAAAGCATGTCTGTCCAATTTGTGACAAAGCTTTTTACGATAAAGGCAAGCTGAAATTCCATCAGCATAAACATTCTGAAGTAAGGAATTTTCATTGTGAAGAATGTGGTCGCTCCTTCAAGACCAGAAGTGACCTGTATCAACATTTTGAGATTCATGATAAAGGAAAAACATTCAAATGTGAGGAGTGTGACCTGGAAGTGGCTAAAAGAAGCACCTATGAAGCTCATCTACGGACCCACACAAGCAAAGGTGATATAAATTGTCTCTCAAGTGTCTGTCGATACTGCAAAAAGGAGTTTAAAGAAAATAGTAATCTCCAACGTCACATCGCATCGGTTCACGAAAAAGTTATCAACTTTGTCTGTGAAATCTGCAATAAAGGATTCACCAGGAAAGATCGATTTGCTGAGCACAATGAGTTGCATCGTAGAAAAGCTCAATTGAGACCGAAACGAGTTTATGTAGAAGGAGCTACTGTTCACCTGGAGTCAGATGAAGAAGATCCAGTTGAAGATGGGGAGTATCCTTGCGATTCGTGCAGTAATGCTTATAGAACAATCAAAGCAGTGACGAGGCATAAAATGAAAATTCATGAAACTCTAAATAAATTGCAGTGCGATGATTGCCCAGAAACATTTTTCTCTAGAATCGACTTGAACTCGCATCAAGAGGTAACTCATGGAAAAACAATAAAGCCCGACATCTTCAAATGCGACGAATGTCAATTGGAATTTTTGGAATCGAATAAATTCTATCTGCATTACAAAACCAAGCATCCAAAAGCTACTTTCAAGTGTGAAAATTGTAGCATGAAATTTAAAAAGAGAAGCTCCTATGATATACATGTTAGACAATTCAAAGATTTGGGAAGGTGTTTCAATATTCCACACAGTTCTGATGTTAAAATTGAAGATTCAGATAGGAAATATTCCTGTAATATTTGTGAGAAATCGTATAAGACTATTGATTACCTCAAAAAACATCGTAGACTGGTCCACCAATTGATCAAAAATTACGTGTGTGAGATTTGTCATGCAGCCTTCATGAACCACTGCGAGTTTCTATACCATCAGCAAAATCGACACAGCAAAAAAACGAGTTTTGTTTGTGAAGACTGTGGCCAGGGCTTCAAAATTAAGAGCGAGCTTAACAAACATTTCGAAACACACGATAAAGGAAAGACTTTTAGCTGCTCTTTGTGYCCACTTGAGTTTTCAAAGAGAAATATTCCTGAATCGACTCTCRATGACGAGTGGGAAGAACTTATTGAAGGCGAACTGCCACTTGATCAGGATGTTCATTTTGAGCAGCTCATTATTGGAACAGTTAAGGARGAGCCKGAAATATTATTCAAAGCTTCTTCACCAAAAAAAAAAGTAAGCCGTTCCAAATGGGAATACAAGTGCGAGCATTGTGATATGGTCTTCAAGAATTCGGGTGCTTTACGTCAACACCGTTTCCGGAAACACAATCCAAATAAGCACAAACATCGCAAGCATAAGCCAGGAAAAAAAATTCCTGAGAAGTCAACGTGTGAAGTTTGTTTCTTGGAGTTTAAATCGAAGGATGCGTTAAGGCAGCATACAACTAGAAAACACAGCGCTCGACCACCTAAACCATCCGCTAGGGTTCAATGTCCYGTTTGTGAGCTGTGGTTCAATTCGAGAGAGTCCATGGGAATGCACAGATATAGGAAACATAGCGCAAATCCACCTCCCAAGAAAGACAGACCTTGCGATCTTCATTTTGCATGGGAAAAGAGCTATAAGAGCCATAACGATATTCATCATAAAATCAGAGTTCTTGACGTATTTGAAGAAGATGAAAATATCGCAGACGTTCCACCAGAAGATGGTAGTGAGCCAAAAATTCCAAAATCTCATGACTGCTCAATATGCTCGAAGTCTTTCATGTCTGCTCATCACTTACTACGCCATAACCTCCTAGTTCATGAAAAGCAACAAGTAATTTTCTGCAACTTCTGTCCCTCAACTTTCCGCACTCGCGTCGAACTCAAATCTCATTCTAAGGAAGTTCACTCAAAAGATTGCATAGTTGATTGTGTTTTCTGTGAACATTCTTTCACGAACAAAGATTCGTGTGATCAACATGAAGTGGATATTCATGATTTGCAATTAAAAGCTTTTGGCTGTTCATTGTGTAATAAAACTTATACCATAAAAAATAATTTGAGGAAACATCAGTTGGATGTTCACCTTCATCCAGARAGGAAATATATATTYTGTAAGATTTGCAAAGAAAGATTTGTGAGCTATAAATTGAGGTTAAAGCATATGCAGCTTATTCATGARGACGGTGACAAGTTGACTCGAGATTGTGGAGTTTGCCAGGAAAAATTCAATCTGGCCCAAGACTTTTTTGATCACATTRCTACACACGAAGGTTGTTTTATCTGTTCAATTTGCGGAGTCAACAATGTCGATCAATTRGCCCTCAAGCACCATAAATTCCTGCATCGAAAAGTCAACATCGAAGAGAAAAAAATTGTTTGTGATACATGTGGAATGCGATTCTTGAAGAAGGCTAATCTTTTAGTGCACATGACACTACATACAGGCGAGACAAAATTCGTYTGTGATGAATGTGGAAAAGGCTTYAGATATCAGTCGAATCTTTGCGATCATAAAAATATCCATACAAAAAAGTTTGTTTGCAGTTATTGTCAGAAAGTGTTTCCGACCAAACAAACAATGGATGCTCATATAAATTCTCACATTGGATATAAACCTTACGCTTGTGATTCATGTGATGGCAAGTATATAAGTTTGCCTGCGCTCAAGATGCATCAAAGAACACATAGTAAAGAAAAAAGGTACAAATGTCATTTATGCGCGGTTGTTTATGGTTATAATATTTCATTAAGAGCCCATTTGTTGAAACACCATGGATTGATTCAAGAAAAACAAGCTCGTGGTAGACCTACTGGAAATGCAGTTTAA
- Protein Sequence
- MSVVCEQCGKSMKSGKTLKNHVESVHEKIRKHVCPICDKAFYDKGKLKFHQHKHSEVRNFHCEECGRSFKTRSDLYQHFEIHDKGKTFKCEECDLEVAKRSTYEAHLRTHTSKGDINCLSSVCRYCKKEFKENSNLQRHIASVHEKVINFVCEICNKGFTRKDRFAEHNELHRRKAQLRPKRVYVEGATVHLESDEEDPVEDGEYPCDSCSNAYRTIKAVTRHKMKIHETLNKLQCDDCPETFFSRIDLNSHQEVTHGKTIKPDIFKCDECQLEFLESNKFYLHYKTKHPKATFKCENCSMKFKKRSSYDIHVRQFKDLGRCFNIPHSSDVKIEDSDRKYSCNICEKSYKTIDYLKKHRRLVHQLIKNYVCEICHAAFMNHCEFLYHQQNRHSKKTSFVCEDCGQGFKIKSELNKHFETHDKGKTFSCSLCPLEFSKRNIPESTLXDEWEELIEGELPLDQDVHFEQLIIGTVKEEPEILFKASSPKKKVSRSKWEYKCEHCDMVFKNSGALRQHRFRKHNPNKHKHRKHKPGKKIPEKSTCEVCFLEFKSKDALRQHTTRKHSARPPKPSARVQCPVCELWFNSRESMGMHRYRKHSANPPPKKDRPCDLHFAWEKSYKSHNDIHHKIRVLDVFEEDENIADVPPEDGSEPKIPKSHDCSICSKSFMSAHHLLRHNLLVHEKQQVIFCNFCPSTFRTRVELKSHSKEVHSKDCIVDCVFCEHSFTNKDSCDQHEVDIHDLQLKAFGCSLCNKTYTIKNNLRKHQLDVHLHPERKYIFCKICKERFVSYKLRLKHMQLIHEDGDKLTRDCGVCQEKFNLAQDFFDHIXTHEGCFICSICGVNNVDQLALKHHKFLHRKVNIEEKKIVCDTCGMRFLKKANLLVHMTLHTGETKFVCDECGKGFRYQSNLCDHKNIHTKKFVCSYCQKVFPTKQTMDAHINSHIGYKPYACDSCDGKYISLPALKMHQRTHSKEKRYKCHLCAVVYGYNISLRAHLLKHHGLIQEKQARGRPTGNAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -