Pste002705.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parochlus steinenii
Gene Symbol
aurB
Assembly
None
Location
scaffold121:185214-198362[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.00088 0.035 14.2 0.3 2 23 22 43 21 43 0.97
2 25 0.00015 0.006 16.6 6.8 1 23 49 71 49 71 0.98
3 25 2e-06 8.1e-05 22.5 4.3 1 23 77 99 77 99 0.97
4 25 0.00021 0.0084 16.1 0.0 2 23 106 127 105 127 0.97
5 25 0.00024 0.0096 15.9 2.3 2 23 134 155 133 155 0.96
6 25 5.1e-07 2.1e-05 24.3 2.4 1 23 161 183 161 183 0.99
7 25 6e-06 0.00024 21.0 0.6 1 23 189 211 189 211 0.98
8 25 0.0039 0.16 12.1 2.1 1 23 217 239 217 239 0.98
9 25 2e-06 8.1e-05 22.5 4.3 1 23 285 307 285 307 0.97
10 25 0.00021 0.0084 16.1 0.0 2 23 314 335 313 335 0.97
11 25 0.00013 0.0054 16.7 1.3 3 23 343 363 341 363 0.97
12 25 5.1e-07 2.1e-05 24.3 2.4 1 23 369 391 369 391 0.99
13 25 6e-06 0.00024 21.0 0.6 1 23 397 419 397 419 0.98
14 25 0.0039 0.16 12.1 2.1 1 23 425 447 425 447 0.98
15 25 0.00019 0.0077 16.3 4.5 3 23 536 558 534 558 0.92
16 25 0.029 1.2 9.4 2.3 2 23 566 587 565 587 0.95
17 25 0.0018 0.073 13.2 3.1 1 23 603 627 603 627 0.96
18 25 5.6e-05 0.0023 17.9 3.4 1 23 633 655 633 655 0.96
19 25 0.18 7.4 6.9 0.2 1 13 661 673 661 677 0.88
20 25 4.3e-05 0.0017 18.3 1.8 1 23 1050 1072 1050 1072 0.98
21 25 6.3e-05 0.0025 17.8 5.7 1 23 1078 1100 1078 1100 0.98
22 25 4.6e-07 1.9e-05 24.5 2.2 1 23 1106 1128 1106 1128 0.95
23 25 1.3 54 4.1 5.3 1 23 1134 1156 1134 1156 0.97
24 25 7.7e-05 0.0031 17.5 3.5 1 23 1162 1184 1162 1184 0.97
25 25 0.0001 0.004 17.1 0.1 1 23 1202 1224 1202 1224 0.98

Sequence Information

Coding Sequence
TTGCGACTAGAATATTTTGATGAAAAAAAAGTGAATCATAATGGATCTACACATAGATATTCTAAATGCAATGTGTGTAATAAACAATTTGCTAGAGGAACGTATCTTGTTGACCATCTAAATGTGCATAAAGGATTGAAATCACATACCTGTACTATTTGCAATAAGAGCTTCCAGCATAGTTATACTCTCAAAAATCATTATATCACACACACGGACGACAAACCATTTTGCTGTGATAAATGTGGACGCTCCTTCAATTCCAATTCCAACTTACAGCAACACGTTAAACGACACACAAATTTAAAAAATTTGAGTTGCAAACTGTGTCCAGCAAAATTTGCTGTACAAGGTGATTTAACGGCTCATATGATTACTCATGCAGGTGGAAAAGCTTGGKCTTGTGATGAATGTGGATCTACCTTTACCAAAAGTTGCTCGTTGAGGGAACATCAAAGAATTCATACTGGGATTCGTCCCTATGAATGTGAAACTTGTTCGAAGAAGTTTAACTCGGCGGACCATCTTAAACGACATATAAGGGTCCATACGGGTGAAAAACCGTATGCCTGTAAATATTGCACCCGCGCTTTCGCCCAAAGCAATGATCTCATCAAACACACCAGAATTCACGTTGGCGACAACTACTACAAATGCGAAATATGCAAACAGGGATTTAAACTACATACAATGCTAAGAGAACATTGGAAAGAGCACGAAGGACAATTTGAAAAAATTGTTCCCGAACCGAGCAAAGTAGAAAAAGCTCTCCATGTTTCGGAAAAGCTTGGTCACAGTATTCACATTGATATACATTTTTTCCTAAATNTCACACACACGGACGACAAACCATTTTGCTGTGATAAATGTGGACGCTCCTTCAATTCCAATTCCAACTTACAGCAACACGTTAAACGACACACAAATTTAAAAAATTTGAGTTGCAAACTGTGTCCAGCAAAATTTGCTGTACAAGGTGATTTAACGGCTCATATGATTACTCATGCAGGTGGAAAAGCTTGGGCTTGTGATGAATGTGGATCTACCTTTACCAAAAGTTGCTCGTTGAGGGAACATCAAAGAATTCATACTGGGATTCGTCCCTATGAATGTGAAACTTGTTCGAAGAAGTTTAACTCGGCGGACCATCTTAAACGACATATAAGGGTCCATACGGGTGAAAAACCGTATGCCTGTAAATATTGCACCCGCGCTTTCGCCCAAAGCAATGATCTCATCAAACACACCAGAATTCACGTTGGCGACAACTACTACAAATGCGAAATATGCAAACAGGGATTTAAACTACATACAATGCTAAGAGAACATTGGAAAGAGCACGAAGGACAATTTGAAAAAATTGTTCCCGAACCGAGCAAAGTAGAAAAAGGTGAAATCTTATCAAATTCGGAAAGTAAGTTTCCTATTTGTTCCAATGATGTTGACAATATTCTTATCAAAGCAGAGCCACTAGTTGTACTAGAAAAACAGRAAGTCGTAAAAATTAAGAAAAGGAAGTCAACGAAAATAGTTAAAGCAAAAACCAAGAAGAAAGAATCTGGCACCAGCGATAATTCTGACAAAACCGAAATAAATCTTCTAGCCTGTCACATTTGCCTGAAGAAATTTACCCATAAGTCGTTGCTAAAAAATCATCTCAAAACCAAAGTCCACAATATCATCGATAAAAACTTAAAATGCACAGAATGTCCYAAAAGATACAGATCATTCCAAGGGTACCACAACCATTTAGCTCAGCATGCTGGATTATCAGCMCATATGAAGTTCCACGCTGAAGAAAAAATTCACAAATGTGATCAACCAAATTGTGGYGCATCTTTTAAAAGCAAATATTCTYTGTACAATCATAACAAGMGRCATGAAAATTTGAGAAATTTTGAGTGTCCAAAATGTGATAAAAAGTTCCAGAAGGCTGATCATTTAAGGAGACACGATAGGACTCATACTGGTCTAAAACCGTTTACTTGTAAATACTGTGATCGAGCTTACGCACAAAGACCCACTTGGATGTCTAAGGCCAAGAAAGTTGTTGCAAACTATGAGATCGAGGATGTCGAAAAGTTGTTGGAGTCGGTTCCTGTCGATTATGCAGAACAAGTGGCAAAAATAACAATTGATATAATGAAACATCCTGCTTACGGAGAACCAACCAACTGGGGTAAGAATGATTTTGAGCTCGGAACTACTTTGGGACGAGGAAAGTTCGGTAGAGTCTACATCGCTCGTGAGAAGAAATCGAATTTTTTGGTCGCAATGAAGATCATGTTTAAGTCAGAGCTGAGCAAAGGAAGAGTCGAGAAGCAGTTTTTGCGTGAAATTGAGATCCAGTCACGTTTGAAGCATCCAAATATTCTTCGTTTATACACATTCTTTCACGATGATCGTCGTATTTACATTGCCTTAGAGTTGGCTGCTCAAGGAGAGCTTTACAAGCATTTGAAGGCTTCGCCTTATGGTCGGTTTGAAGATAGTCGTGCTGCAAAATACACGTATCAAGTTGCAGCTGCACTCAATTATTGTCATCTCAACAACGTAATCCATCGTGATTTGAAACCTGAGAACATACTCTTAACAGCTGATGATAATGTCAAGCTCGCAGATTTCGGTTGGTCAGCCCACACCATGTCCAATAAACGTAAAACAATGTGCGGAACTTTRGATTACTTGCCYCCAGAGATGGTAGAAGGAAGTCACTATGATGATTCAGTGGATCAATGGTGCTTGGGAATTCTTTGCTACGAATTCTTAGTSGGWCAACCACCATTTGAGTCTGAAAACACAGATAACACGTACCAGAAAATTAAGCGATTGGACGTTAATTATCCTAGACATCTTACTACTGGCTCAAAAGATCTTATCTCGAAGCTTCTGCGTAAACACAATCAGAACCGAATGAGTCTTGTGGATGTAATGCAGCATCCYTTTGAGGTTGAAAATTCATGCAGGATTTGTTTGCAAGAAGACTCTACGCTAGAAAACATATTCTCTGCTGTAATTGAAGATCAGGAAATAGCTAATGTCTTAATATCTCTAGTTCCTACTTTGCAAATAGTTCAGTTTGATGGTCTTTCGGATAAACCTGGCGATCTCGGAAAACATTCCAAATCTCATGACACCAATAAAAGTCACCAATGTAATATTTGCCAAAAGTTTTTCGGTAAAGCAAGTCAACTTATAGACCATCTGAATCGACATCAAGGGATCCGACCTCATCAATGTGCTGTTTGCAATAAAAGCTTTCAGCAATCTTGCACTCTGAAGGATCATATGAGAACTCACACGGATGAGAAACCATTCCTCTGCACTCAATGCGGTAAAAGCTTCAACAACTCCAGCAATCTCAGACAACACGTCAAACGTCATTCAGGAATAAAACTCTTCTGTTGTCATCTTTGTCCAGGAAAATTCAGTTGCAAAGGAGGACTCACATCTCATCTACAAATACATTCTAACGCTCGTCCTTACTGTTGTGAAGTTTGTGGATCATCTTTCACGAAACCTTACTCGTTGAAGAAACATAAGCGATTGCATACTGGCAATGACCTCATCAAACACACTAGAATTCATGTTGGCGATGCGATCTATAAATGTGAAATCTGCCCAGCTGCCTTCAAATTGCAAGGTCAGTTGCGACAACATTGGAAAGAGCATTATGGCGATGGGGAAACTCCTGAAATGACTTTTACAGAAGTATTAGTTAACAAAGAAGGGATTTTAGCGAATATTGGTGAAGCAACTTGA
Protein Sequence
LRLEYFDEKKVNHNGSTHRYSKCNVCNKQFARGTYLVDHLNVHKGLKSHTCTICNKSFQHSYTLKNHYITHTDDKPFCCDKCGRSFNSNSNLQQHVKRHTNLKNLSCKLCPAKFAVQGDLTAHMITHAGGKAWXCDECGSTFTKSCSLREHQRIHTGIRPYECETCSKKFNSADHLKRHIRVHTGEKPYACKYCTRAFAQSNDLIKHTRIHVGDNYYKCEICKQGFKLHTMLREHWKEHEGQFEKIVPEPSKVEKALHVSEKLGHSIHIDIHFFLNXTHTDDKPFCCDKCGRSFNSNSNLQQHVKRHTNLKNLSCKLCPAKFAVQGDLTAHMITHAGGKAWACDECGSTFTKSCSLREHQRIHTGIRPYECETCSKKFNSADHLKRHIRVHTGEKPYACKYCTRAFAQSNDLIKHTRIHVGDNYYKCEICKQGFKLHTMLREHWKEHEGQFEKIVPEPSKVEKGEILSNSESKFPICSNDVDNILIKAEPLVVLEKQXVVKIKKRKSTKIVKAKTKKKESGTSDNSDKTEINLLACHICLKKFTHKSLLKNHLKTKVHNIIDKNLKCTECPKRYRSFQGYHNHLAQHAGLSAHMKFHAEEKIHKCDQPNCGASFKSKYSLYNHNKRHENLRNFECPKCDKKFQKADHLRRHDRTHTGLKPFTCKYCDRAYAQRPTWMSKAKKVVANYEIEDVEKLLESVPVDYAEQVAKITIDIMKHPAYGEPTNWGKNDFELGTTLGRGKFGRVYIAREKKSNFLVAMKIMFKSELSKGRVEKQFLREIEIQSRLKHPNILRLYTFFHDDRRIYIALELAAQGELYKHLKASPYGRFEDSRAAKYTYQVAAALNYCHLNNVIHRDLKPENILLTADDNVKLADFGWSAHTMSNKRKTMCGTLDYLPPEMVEGSHYDDSVDQWCLGILCYEFLVGQPPFESENTDNTYQKIKRLDVNYPRHLTTGSKDLISKLLRKHNQNRMSLVDVMQHPFEVENSCRICLQEDSTLENIFSAVIEDQEIANVLISLVPTLQIVQFDGLSDKPGDLGKHSKSHDTNKSHQCNICQKFFGKASQLIDHLNRHQGIRPHQCAVCNKSFQQSCTLKDHMRTHTDEKPFLCTQCGKSFNNSSNLRQHVKRHSGIKLFCCHLCPGKFSCKGGLTSHLQIHSNARPYCCEVCGSSFTKPYSLKKHKRLHTGNDLIKHTRIHVGDAIYKCEICPAAFKLQGQLRQHWKEHYGDGETPEMTFTEVLVNKEGILANIGEAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-