Pste007527.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- gfi1b
- Assembly
- None
- Location
- scaffold14:170434-173119[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.3e-07 0.00044 19.8 0.3 15 44 210 236 203 236 0.90 2 7 0.017 59 3.4 0.2 19 31 278 290 270 299 0.81 3 7 2.9 9.7e+03 -3.7 0.1 18 26 306 314 305 318 0.79 4 7 0.037 1.3e+02 2.3 0.4 18 28 334 344 320 351 0.83 5 7 0.016 54 3.5 1.2 7 41 352 381 347 383 0.79 6 7 2.5e-06 0.0085 15.7 3.7 13 39 384 407 378 411 0.89 7 7 0.034 1.2e+02 2.5 1.3 19 44 418 440 416 440 0.86
Sequence Information
- Coding Sequence
- TTGATGAGTGAGAAACAGGACTTTAAAATGTTAAGCGATTGGARAAGCTGGTGYCGCCTTTGCGCAAGTGAAGAACCAATCATAAAGATTGAGTCCATAACGGAGCTATTGCCGATTATTCGCAAATTCTCGACTCAATATGATGGAAGCTTTACTTTGATCTGCAGTAGCTGYTATCAGCTGCTGAACCTGATCAATAAGTTCTCTGAAAGATGTGCTAAAGTGGATAAAATGTATTSTGATCTACTGTTGGACATCAACACTGAAACTGATTCGATCAATCTGAAATATCATTATGGACTCGAAGATGAAAACAGCACTGAAGTTATAGGTATATCATCCATTCATTCTCATCACGTCCAAACAGACACAATGGATCTAGATGAAGTGGAAATAAAGCAGGAAGAAGATTCAAATGCTACTCAATCAATTGAAAAAAAGCGAAAAACTAGATCTATGAAAAGTATGCAAGAAGAAGAGGATAGCGATAATGTAGATTACGATAGTTTGGAAGGAGACCTGGAATATATCGAGAATGGCAACTTCGAGGAGCAGAAAGATCAAATTATGAATGGAGAAGAGCTGGAGCAGCAAGAAATGGTTATAAATGATGATATGAAGATTGACGTTAAGTTTGAGTGTAAGACTTGCAACAAAGTTTATGCGCGTGGTTCCTCCTTAAAAAATCACATGCGAACTGTTCATCAAAAAGATTACGAAAATGTGGCCTTTCTTTGTCCTAAGTGTCCAAAAAAAAGGTTCTCTACTGAAAAGAAATTGAAAATCCACGAGGCAGTACACTTACCTGATTCTTTGAAAATGATTCATCCTTGTGTTTATTGTGATAAAAAATTCACAAAATCCGTTAATGTGCAAGCTCACATTAAAGCTATACATATAGGCTCTAGACCGTTTATTTGCGAAGAATGTGGAAAATCTTTTGGAACAAAAGGTGCTCTGAAAGAACATCAAATAACTCATTCTGAAGATGCACCATTTGCCTGTAGCTTTTGTGAAAAAAAATTCAAAAATCTACCGAGATTGAAAACCCACGAAGATATTCACAATGACACACAGTATATATGTCCTATTTGTGGGCTACAGTTGAACACAAAAAGAACCTTRAAAATGCATATGGTGTGTCATTCTGATAAAAAAAAGTTTAAGTGTAATTACTGTGGRAACGAATTTAAACGCTCCAAAGCACTTAAAAATCACCTGATTTTACACACAGGATTGCGCCCATATAATTGTGTTTTCTGCGACAAATCTTTTGCAAATGGAAGTAACTGCAGAAGCCACAAGAAAAAAGCACATCCTGTAGAATTGGCTGCTCTTGAAGCTTCTGGTGAACAAATAAAGGTTACAAATATACCCAAGTTGGAACATTTGCAGCCAAAGCCTCATCAAATCCAGCAATTGCAACAACTACAACAAGCGATGGTTTCTGGTTTAACGGGCGAGAATTCAAACAATTTGTCCAATGATATTGAGCAAACACAAACACTGCCTTCCTTAAACCTTCACTCCGGCATTCAACAGGAAATAAGCAACGTACAAAGTCAGCTTCTTCAAGAATATGCTGGCAGTTTACAAACGATGCAAGGGATCGTTTTGCCATCTAGTACACATTTAGTACAAAGTCATTATTATGTGCCGAATAAACAGGCAACAGACAAAACATGA
- Protein Sequence
- LMSEKQDFKMLSDWXSWCRLCASEEPIIKIESITELLPIIRKFSTQYDGSFTLICSSCYQLLNLINKFSERCAKVDKMYXDLLLDINTETDSINLKYHYGLEDENSTEVIGISSIHSHHVQTDTMDLDEVEIKQEEDSNATQSIEKKRKTRSMKSMQEEEDSDNVDYDSLEGDLEYIENGNFEEQKDQIMNGEELEQQEMVINDDMKIDVKFECKTCNKVYARGSSLKNHMRTVHQKDYENVAFLCPKCPKKRFSTEKKLKIHEAVHLPDSLKMIHPCVYCDKKFTKSVNVQAHIKAIHIGSRPFICEECGKSFGTKGALKEHQITHSEDAPFACSFCEKKFKNLPRLKTHEDIHNDTQYICPICGLQLNTKRTLKMHMVCHSDKKKFKCNYCGNEFKRSKALKNHLILHTGLRPYNCVFCDKSFANGSNCRSHKKKAHPVELAALEASGEQIKVTNIPKLEHLQPKPHQIQQLQQLQQAMVSGLTGENSNNLSNDIEQTQTLPSLNLHSGIQQEISNVQSQLLQEYAGSLQTMQGIVLPSSTHLVQSHYYVPNKQATDKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01160689;
- 90% Identity
- iTF_01160689;
- 80% Identity
- iTF_01160689;