Pste002585.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- bab1
- Assembly
- None
- Location
- scaffold29:177429-179865[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.8e-13 1.5e-09 37.0 0.0 2 43 405 446 404 448 0.91 2 2 0.02 34 3.8 0.4 4 21 534 550 533 554 0.90
Sequence Information
- Coding Sequence
- ATGGGCAGCAGCGATATGGGCACTAGCAACGGCGCTTCAGCCGCCGGACAGACTTACTGCTTACGTTGGAATAATCATCGCGCCAATTTGGTGGAAATTCTAGAGGCGCTCATTAAGGTGGAATGTTACGCGGACTGCACCATTCACCTTGACAATCGACAGCAGTTCAAGGCTCATCGCGTCGTTTTAGCCGCCAACTCTCCATACTTTCAGGCGATTTTGAAAGACGTACGAGGCGACCACTGTGCAATTTTATTTCCTGGTGTTGATGAGTTTGAGATGCGAGCTCTCCTTGAATACATGTACACTGGTGARGTAAATGTTTCTCAGTCTCAGATCCCAAGGATAATGAGAATMGCTGAGCAACTAGAGGTCAAGGGATTGTGTGACATGACAGATTTAAAAGGAAAGTTTGARAAATTTGAGAATCCAGCTCCAAATATGCTCTCACCTCGTCARCCAGAGATGACTACACCAAATGGCTCAGATCCTTCACATYCTCTTCATCCTCTTCTYCACAATTCCTCRCCATCTGTCTCAACCACGAAAATTTCGTCCGCACAGAGCAGCAGCTCATCACCTCCTTACAGTGCCYACAAACCTTACGCTAACATCTTYCAGAGRAGTCCTGGTGGAAGTGAGATGAGCGCTTTACCTGCTTGGGGTCTGCCAACTACACCCACTCAYAATCATGCTCAGAGAGCAGCTGTATCGATGCTCAGCTCTGCCTATGACTCTGGYCCAGAGATGAATCCACTCAAGAGGAAGAAACTTTCATCAATTTCAAGTATGATGATGATGAAYAGAGACACGCCCATTTTGAGGAATGTTTTGGCTCAAAGTAACACAGCTGACTCATCACAAAGTACTGCACACCTAGCAGGTAATCAAATGAGTCCAGTYCAACGACATGAAGGTAATGGTGGAAGGAAAAGTGGAAGTTATCACAGCAGCAACGGAAGTGAYCATTCTGATAAGAAATATAAAGATGATGAGCCTCAATCTCCCTACACTGACAAATCTTTCGAGGAGGATCATCAGGAGAGGAAAATWACATCACCACAAGATTACACAAATGATCCAAGACTTGCATCTTATCTGCAACAACATCATCATCTTAATCATCCATCTTTACATGGACAAGGTGCCTCCTCTTCRTCTGGCATCAACCCAAGAGARAARCCAGAGTGGAAACGCTACAAACAATATACAAGGAATGATATTCTGCAAGCTATAGAATGTGTCCGTAATGGTATGAGTGCCTTACAAGCBAGCAGGAAGTTTGGAGTTCCTTCAAGAACTCTTTATGATAAAGTRAAAAAAATGGGAATCACAACTGGAACACCTCGCAGTCGTTCTATGAAACGTGAGTCTGGTAGCTCTGGTGGTGGATCAGCTGCYTTYCCTTAYGGCCTCAACTCTTCGTTCCTCTACCCAGCTCAAGACAATCAATTGTCACAATCTCAAGACGTCTCTGATCGAAACGACGTGGAAGAGTTGAAACACCATCACGCCATGCAACAACATTCTGCTCTTTTGGATCCAAATTTCCTACAACAAGCGTTGGAAGCTCGTGGTGGTGACGCTTTACATGCTATGGCATTCGCAGCTGCCGCTCACGCTGCAGTAAATGGAATGAGCAGCCATCATGAACAAAGAAGGGATGGAAATCCTTCCAGTCGTTCCCCAACAAGTCCCAGTTTGCTACAAAAATACATGAGCAGTAGAAAAGTGGAGCAGGAAGTGGAGGCAGCAAGACATGACTCWCCAATAAAACGTGAGCCAATGGACTGTCCATCTGATGCTGAAGGTGAGGAAGTGGAAGATTTATCAATGACCAAAAGAGAGATGTCTCTTAGTCCTCCACCTCTAAATTGA
- Protein Sequence
- MGSSDMGTSNGASAAGQTYCLRWNNHRANLVEILEALIKVECYADCTIHLDNRQQFKAHRVVLAANSPYFQAILKDVRGDHCAILFPGVDEFEMRALLEYMYTGEVNVSQSQIPRIMRIAEQLEVKGLCDMTDLKGKFEKFENPAPNMLSPRQPEMTTPNGSDPSHXLHPLLHNSSPSVSTTKISSAQSSSSSPPYSAXKPYANIFQRSPGGSEMSALPAWGLPTTPTHNHAQRAAVSMLSSAYDSGPEMNPLKRKKLSSISSMMMMNRDTPILRNVLAQSNTADSSQSTAHLAGNQMSPVQRHEGNGGRKSGSYHSSNGSDHSDKKYKDDEPQSPYTDKSFEEDHQERKITSPQDYTNDPRLASYLQQHHHLNHPSLHGQGASSSSGINPREKPEWKRYKQYTRNDILQAIECVRNGMSALQASRKFGVPSRTLYDKVKKMGITTGTPRSRSMKRESGSSGGGSAAFPYGLNSSFLYPAQDNQLSQSQDVSDRNDVEELKHHHAMQQHSALLDPNFLQQALEARGGDALHAMAFAAAAHAAVNGMSSHHEQRRDGNPSSRSPTSPSLLQKYMSSRKVEQEVEAARHDSPIKREPMDCPSDAEGEEVEDLSMTKREMSLSPPPLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01160601;
- 90% Identity
- iTF_01160601;
- 80% Identity
- iTF_01160601;