Pste002673.1
Basic Information
- Insect
- Parochlus steinenii
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold121:17113-22390[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-12 3.4e-09 35.9 0.0 1 39 420 459 420 463 0.90 2 4 3.7e-12 6.2e-09 35.0 0.0 2 39 475 512 474 515 0.94 3 4 1.6e-16 2.7e-13 49.0 0.0 3 45 531 574 529 574 0.97 4 4 7.5e-20 1.3e-16 59.7 0.0 1 42 581 623 581 626 0.95
Sequence Information
- Coding Sequence
- ATGTGTATGCTCACGAGTTTAATCCGCACCGCTGAGCAGCTAAAAATCAAAGGATTATCTGAAATTACAGACAATCCACACGAATCTGACGCCGAGATTGCCTATCCACCGCACAAAAAGAGTCGTGCCTCCAGAAAATACGAGAGCCATCACAACAAGAGTCTTCCTTTACATATAGAGCGCCATTCTAAAGAGTCTTCTATCCACTTAACCGCCAAAAATGGATCTCCAATAGTATTATTAGGCAGTAAATCACCGTCGAAAGAGTCGAGAAGTAACAAAAGTAGTGATAATAGTAATAAAGCAATGGCTAGTCTTGATATGGGAATGAATATGAATGGGAATGGTATGGGAGTTCCGATGACGTACCTGGACTTTGCCCCTGAACCACCTGCACCCACAGCCACTCCTGTTGTCACATCAGAGATGAATTGCAATCCCAGCCACGATACTAGGGATTTATCAAATTCGGCGCAAACGAACGGGGACGTTGTGAGAATAAAGTTTGAAACTCTACGATCCCTGGACAACTCGAATGACACGCTAGTTATCGACAACAGTCATATATCACAACATTCCATCCACCATTTAGATCATCACAGCACCCATCAAAACTCATCCAATAGTCAAATTACGCATCATCTGCATCAGCAGAACGCGCCGCCAACGATAATAACCACCTGTTCGCCAGCTTCCTTAGATTTGCCCATTCGCACGACGACTATAACCACCACAATGGCCAGCAATGGACACAATATGCATAACGAGCACAGCCCAGAGAATTCCCAACAACATTATTCTTCACCATCTCAAGCTCAGATGCAGCAACAGCAAAATATTTCACAGATGCATCAACAACAACAACAGCAAATGCATCATCATCATCACCAAATGCAACATCAGCACCCGCTGATCCACAATATAAAGACTGAAGATGTGGACATCAAACCAAGCAGTGAGTCTCGACCATTTTATATTGTTTATGATAAAACTAACATGTCAACCGACAATCCAGTCCACGAATTAATGGCAGCCAGCAATAATATGGAAGTAGATTCTTCAAATAACAACGATTCGGTGCATGGTATTATTGTAACACCAGAAATTGTGACTATGATGTCACCAAATCAAATGGATATGTACAACTCAGACGCAAGCGAGGACACCAAGATGATGAACAACTCGAACGAGCAGCCACAGTACTTGAATCTCACTGGACCAAATGATTCCAAAACGCCCACCGGTCCTAAAACGTGGACACCCAACGATATGGAGGCTGCTTTGGAAGCTCTACGAACTCATAACATGAGCCTGACCAAGGCGTCTGCAACTTATGGAATCCCCTCCACAACATTGTGGCAACGAGCTCATCGTTTAGGCATCGATACGCCTAAAAAAGAAGGACCCACTAAAACATGGAACGAAGACTCTTTGAATAACGCTCTTGATGCTCTGCGGACTGGCACAATCTCAGCCAATAAGGCTTCAAAGGCCTTTGGCATTCCGTCTTCCACATTGTACAAGATTGCAAGACGTGAAGGAATCAGACTGGCGGCTCCATTTAATGCTGCACCTACCACATGGTCAGCTGAGGATTTGGAGAAAGCTTTGGAAGCTATTCGAGGGGGAGCAGCTTCTGTTCAAAAAGCTAGTACGGAGTTTGGTATTCCAACTGGAACACTTTATGGTCGATGCAAACGTGAAGGAATCGAATTATCTCGATCAAATCCAACCCCATGGTCTGAAGATGCTATGATGGAGGCTTTGGAAGCAGTGCGGGTCGGACAAATGTCCATTAATCAGGCAGCGATCCACTACAATCTGCCTTATAGTTCTCTCTATGGTCGGTTTAAGCGTGGCAAATATGACAATGGTAACAATGGCGATGTAGCTCATGTAGATCACAGCCCAGAAAATTCGCAACACCAATATTCTCCAAATCAAGTCCAACAAGTTCAGCAGGTTCAGCAGGTTCAGCAAGTGATCCAACAGCAAAATCAGCCTCAGCAGATAATTCATCAAAATCATATTATACACCATCAGCCTCCACAAATCCACCACATCCAACAAATAAACCATCATCCTCATTTACAACAAAATCAAATCATCTATCAGCACCATCAGCCGCAAATTCTGCAGCTTCATCAAATCAAAAAGGAGACGAGTTGA
- Protein Sequence
- MCMLTSLIRTAEQLKIKGLSEITDNPHESDAEIAYPPHKKSRASRKYESHHNKSLPLHIERHSKESSIHLTAKNGSPIVLLGSKSPSKESRSNKSSDNSNKAMASLDMGMNMNGNGMGVPMTYLDFAPEPPAPTATPVVTSEMNCNPSHDTRDLSNSAQTNGDVVRIKFETLRSLDNSNDTLVIDNSHISQHSIHHLDHHSTHQNSSNSQITHHLHQQNAPPTIITTCSPASLDLPIRTTTITTTMASNGHNMHNEHSPENSQQHYSSPSQAQMQQQQNISQMHQQQQQQMHHHHHQMQHQHPLIHNIKTEDVDIKPSSESRPFYIVYDKTNMSTDNPVHELMAASNNMEVDSSNNNDSVHGIIVTPEIVTMMSPNQMDMYNSDASEDTKMMNNSNEQPQYLNLTGPNDSKTPTGPKTWTPNDMEAALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKTWNEDSLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLEKALEAIRGGAASVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDNGNNGDVAHVDHSPENSQHQYSPNQVQQVQQVQQVQQVIQQQNQPQQIIHQNHIIHHQPPQIHHIQQINHHPHLQQNQIIYQHHQPQILQLHQIKKETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -