Porl010492.2
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- RREB1_1
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000023.1:3932170-3938551[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.044 11 8.7 0.3 1 23 116 139 116 139 0.96 2 12 5.7 1.4e+03 2.0 0.4 1 10 181 190 181 191 0.92 3 12 0.019 4.7 9.8 0.1 1 23 330 352 330 352 0.97 4 12 0.001 0.25 13.8 0.4 1 23 361 383 361 383 0.99 5 12 0.00063 0.16 14.5 2.0 1 23 389 412 389 412 0.97 6 12 0.0025 0.64 12.6 1.6 1 23 762 785 762 785 0.96 7 12 0.00021 0.053 16.0 1.3 2 23 976 997 975 997 0.97 8 12 0.022 5.4 9.6 5.3 1 23 1003 1026 1003 1026 0.97 9 12 0.18 46 6.7 1.4 1 23 1059 1083 1059 1083 0.90 10 12 0.4 1e+02 5.6 0.2 1 23 1107 1130 1107 1130 0.86 11 12 0.019 4.8 9.8 0.3 2 23 1170 1191 1169 1191 0.92 12 12 0.024 6 9.5 5.3 1 23 1197 1219 1197 1219 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCTACAAATGAATTGCCTGACTCACCCCATTGTGGGTATTTCTTGGAATAGTAAAACGAAAACGCCCCACGTTATTCAAACAATCaggaattgtaatattttatcctttgttgttgcagaaatcaaAACAGAAGTCATCAGTGAGGCAAAAGTCGAGACGGAGGGACAGCAAGACGAAAAAATGAAGTTGGAAAACGAGCCTCGTGCTATTCGCACCACCAGCATCGACAGTGATAATAGATCAGATCGCAGTGAAGAAGAAGATTCCAGAAGGGCACGGAAAAGAGCAGCGTCAACGTCCCCATCACCTATTCCATTAGACAAAAGAACAGCTCGCTTTGAGTGTCCGAAATGCCTACAGCGGTTTGATTCAGCAAACGCTTTTGACATTCATCGGTTCACAGCGCATGGAGATGAAACTAGAAGTGGTTATGATGATCTTACTTTTGTCGATTTCTCTGGTAAAAAATTCCCGGATATAGCGCGAGGAGTTTGTGAACGCAACACTCATATTTCCATTGCAGAGCAGCGCTATAAATGTGATTTGTGCTCGCGAGAGTTCCCCTGTGGCCAAGTTTTGGATATACATAGAAAATCCTGTTCTAATTCCGCAAAACTTACCAGTCCAGAAAGAGAGCGTAGGGAAGACTTCTTTGCAAAACTAGATCTAAGGAACAGGTCTTTCGGTATTCCGGGTACTTTGACACCACCTATGGAGAGATTTACACCTAAATTCGATGACGCACATTTAGGTGGAAACGGTATTAGACATATTGATACCGCTAGGGACTTGGCTGATATCCAATCAATCTTAAACGTCACGTCAGCTGGTAGTTTACTAGAAAGGCTAACTGGGACTCGGGTCGCTTTAGAAAATGCTGTACTTACACCTCCTGATACAATAGCAAAGGAACGTGAACAAGAAGAAACACAGGACAACTTTGCAGCAGAATTCAGAAGAATGAAGCTGCGTGGTGAATTTCCATGTCGATTATGTCCAGCGAAGTTTCCCAATCTCAGAGCATTAAAAGGACATAACAGAGTACATCTCAGTGGAACTGGGCCCGGTCCTTATCAGTGCAACATGTGCCCTCATGCGTCTTTGGACAAGGCAGCTTTAGTTCGCCATATGCGAACTCATAACGGAGACCGTCCTTATGAATGCGCGGTTTGCAATTATGCATTTACCACTAAAGCTAACTGTGAGCGTCACTTACGTAATCGTCACGCTAAGGTAACTAGAGAAGATGTCAAACGCTCTATTATTTACCATCCATCAGAAGATCCAAATAATGATGAAGTCAATTCAAAGCTAGCTCGAGAAGAAGTAAAAAGATCGCTCGCGTTTCACACACCTGAAATTGAACGGCGCAATGAATCAACTGGTCGTGACACTCCATTAACACACTACACTCCGAGTTTCATCAATGACAGACACCCAGTAACTTCTTTAGTGACTAAAGCATTGCCAGAATCACCCACTTTGACACCAAGAGAATCTGAACAATCTCTACCTAGAATCAAAGTGAAGGGTATTGGACAGTTGACGCAAATACCTGAGTTCAGGCAACCAGAGGCTACATTTAAAACCAATGACATTCCACCAGAACCTTACGATGAAGACGCCCCCGTTGATCTCAGTACAAGTGACAATAATAGCTGTGATGTCCTCGATCTCAGTAAGAAAAAACGTGACATAGATGAGGATGAACCTAAATCAATTCCTCAACCAGCTTTTGAGGCAACAGCTGCAGCATCAGCAGCAGCAACAGCGTTCGAAAAGACGAGATTTCTTCTAGCCCAGCAAAGACTTTTTGAGTCGTCTCTCCCAAAACTTGATCCCGCTTATTACGCAACTCAGCTATCTCAACTATACGCTGGTACTGTTCCCGGACTTGCTGGCCTACCTCTTCCGCCATCTGCGTTTCCAATCAATCCTTACTTTCTTCAGACATCGTTTTTTCCTCACCCAACTGATTCACAGGAACTTGCCGAAATAAAACAGCgtatacaaaaagaaataattcGCGGTCTTAGCATGTCAGGAGGGCGATTAGTCAATGGTGACCAGGAAACTCAACCCAAACAAGAACCTGAAGAAGAAGACAACAAATCTCTCCCTCGAACTGCTTCTCCTACTCCACCTCCTCGTACTGAATCTCCACGCCCTTTAAGCAATAATATCGCGCCTCAAAACGATTCTGTTAAGATGGTCATTAAGAACGGTATTCTCATGCCAAAGCAAAAACAAAGGCGCTATCGCACCGAAAGGCCATTTTCATGTTCTCAATGTTCAGCCAGGTTTACTTTACGATCAAACATGGAACGTCATGTAAAACAGCAGCATCCACAGCATTGGAGCGTTCGAAGACCAACACCAAGAGCTCCCCCACCATATCCCACCCCAGATAACTTGGCTGATCGCGTAAAATTTGCCCTCCTTGCGCGACATCTTGAAAGACCGTTACAACAAAATGATCGTTCTCCAATCCGTAGAGATTCAGATGAAGTCGCTGACAACGAAGAAGACGAGGACGATACTTTAGTCATTGATGAAGAACCGGAAACAGACGTGAAGTCTTCAGAGCATACTGCAGCGCACAAGGCTGCTGCGGAAATTTTAATGGCCACACGCCAACAAGAACTTCACAAAGATTTCGATCTTAAAATAGCTGGCAATCTAATCAACAAACCTGTACCCATTACCACCGATAAAACAGAAACTGGAACGGACCCTATTCAAATTTCTGAACCTGTGACCGTCCCAACGCGCAGTGATGAAGAGGAAGACGAGGAAGGCCTTGTCGCATCAACTAGCGAAGGCAATAATTCTGGAAGCGATGAAAATAAATCGGAATCAGACACAACTCAACCGCCCAAAAAGAAATCCGCATACAGTCTGGCCCCAAATCGCGTCTCGTGCCCGTATTGCCATCGGAAATTCCCCTGGTCCTCATCACTCCGTCGCCACGTTCTAACACACACCGGCCAAAAGCCTTTTAAATGTCCGCACTGTCCGCTCCTTTTCACCACAAAATCCAACTGTGAccgtcacctcttacgaaaaCATGGCGGCTCCGCAAGGGCTATCTTAGCAGAACCCATTTCAGACTCCATGTCTGTACCtcaaaatacaaatgaaattaGAACGGTCCCAGAAAGACCTTTCAAATGCGCCTCATGTCCCACTAGCACGTTTTCGTCCATGGAAACCCTGAAAAAACATATGTCATCGCGTCATGCGACAAGTGATTCTCAACCCGGGTCTCCAAACCCTGAAGGAAATGAGGAAGCACCGGATGGTCTAGTCTTCAAGTGCCATCTTTGTGAGGGATCTTTTGGGGATAGAAGCAGTGCTTTAGGACATTTGGCAGCTAATCACGCTGCAGAATACGAGCAATTAGTCAGCAAAGGGGCGTTAGACGGTACGAGCGACCGAAGCGAAAGCGCAGATGATGACGAAAGGGGAAAATTTCCTGATCATGCCAATAGAAAGGTGGTATGCGCCTTCTGCATCCGTCGCTTCTGGTCTGCGGAGGATCTTCGCCGCCACATGAGGACGCATTCCGGCGAACGACCTTTCGCCTGCGACCTTTGTCGACGACGTTTCACATTGAAGCACAGCATGCTACGCCATCGCAAGAAGCATCGCGATGAAATCACCGACGATGAAGAAGCTACACCGCCTAACACGCCACTAGAACCTGAAAATGTAACTAACGGATACCGCTACCAAGAGGATGACGGATCGGGCAATGAGATACCTTGCAACGTTAACAACAACAACTCTCCACCATCCGCCCCTTACGACAAAAAGTTGAAGCTCGAAATGACGTCACGAAAGTACTCATCAGAGGCCGAAAATGACGCTGAAAATGGTGGCGATCTGATCGGTAAACTCCTTGGTATACCGGACAAGACTATCATAAACAAACTTCTTTCCTCCGCGGACGAGGCGGCGAAATTCCTCGGGGTGAACAAATGA
- Protein Sequence
- MCMLQMNCLTHPIVGISWNSKTKTPHVIQTIRNCNILSFVVAEIKTEVISEAKVETEGQQDEKMKLENEPRAIRTTSIDSDNRSDRSEEEDSRRARKRAASTSPSPIPLDKRTARFECPKCLQRFDSANAFDIHRFTAHGDETRSGYDDLTFVDFSGKKFPDIARGVCERNTHISIAEQRYKCDLCSREFPCGQVLDIHRKSCSNSAKLTSPERERREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFDDAHLGGNGIRHIDTARDLADIQSILNVTSAGSLLERLTGTRVALENAVLTPPDTIAKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHTPEIERRNESTGRDTPLTHYTPSFINDRHPVTSLVTKALPESPTLTPRESEQSLPRIKVKGIGQLTQIPEFRQPEATFKTNDIPPEPYDEDAPVDLSTSDNNSCDVLDLSKKKRDIDEDEPKSIPQPAFEATAAASAAATAFEKTRFLLAQQRLFESSLPKLDPAYYATQLSQLYAGTVPGLAGLPLPPSAFPINPYFLQTSFFPHPTDSQELAEIKQRIQKEIIRGLSMSGGRLVNGDQETQPKQEPEEEDNKSLPRTASPTPPPRTESPRPLSNNIAPQNDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPTPRAPPPYPTPDNLADRVKFALLARHLERPLQQNDRSPIRRDSDEVADNEEDEDDTLVIDEEPETDVKSSEHTAAHKAAAEILMATRQQELHKDFDLKIAGNLINKPVPITTDKTETGTDPIQISEPVTVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPISDSMSVPQNTNEIRTVPERPFKCASCPTSTFSSMETLKKHMSSRHATSDSQPGSPNPEGNEEAPDGLVFKCHLCEGSFGDRSSALGHLAANHAAEYEQLVSKGALDGTSDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDEITDDEEATPPNTPLEPENVTNGYRYQEDDGSGNEIPCNVNNNNSPPSAPYDKKLKLEMTSRKYSSEAENDAENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00961349;
- 90% Identity
- iTF_01155833;
- 80% Identity
- -