Porl041230.1
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- -
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000192.1:726542-737568[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.5e-07 0.00024 23.3 1.0 1 23 350 372 350 372 0.97 2 12 0.87 2.2e+02 4.6 0.2 5 14 442 451 440 455 0.86 3 12 0.00027 0.067 15.6 1.2 1 23 470 493 470 493 0.97 4 12 0.00032 0.081 15.4 1.3 1 23 497 519 497 519 0.98 5 12 0.022 5.5 9.6 1.4 2 23 541 563 540 563 0.92 6 12 0.012 3 10.4 1.0 1 23 567 590 567 590 0.97 7 12 0.026 6.5 9.4 0.2 2 23 613 635 612 635 0.93 8 12 0.00065 0.16 14.4 2.1 1 23 645 667 645 668 0.95 9 12 0.011 2.7 10.6 1.7 5 23 687 705 684 705 0.93 10 12 0.0093 2.3 10.8 0.4 1 23 711 733 711 733 0.94 11 12 0.33 84 5.9 2.8 1 22 739 760 739 763 0.90 12 12 5.7e-06 0.0014 20.9 2.2 2 23 826 847 825 847 0.97
Sequence Information
- Coding Sequence
- ATGAAAGATGTGCCGTATACTCAATATCCAACAGGTAACGTCAACGGCATACCATCACCAATCTATAGGTTCCTTAGAAAACAGCCACAAAAATCTGATGTCATTTCTCAGAATTCAAACAGgaaaATCATGGCATTGCAAAATATTCAATCGCTAGATAGTAAAATTCCAgatgataatttaagtaaaataaatatcaaacaaGAAATTCCTCATTTGGAAGTAAATGAGGATATACAAGTTAAAACTGAAGTAGATCCTCATGAGTATAATGTATCAATTGAAAATCCTTTTGAAAATATACAGCTTGAAGTCAAACATGAATATGTATCATCTCTCAATATTGATAAACAAGCTcaaaataaaattgtcaatGAAAATATATCATCAATTGTTGAGAAAGATAGGGAAGGAGCTGAAAATTATATATCTCTTGTaacaatatttgaaaaatctaaTCACAAAACACTGAAGGAAACAATTACTAACATGTATGATGGCAATATAGACATTAAACAAGAAGAGCATGTAGAAGGAAATTCATTTTATAATTCTAACTTTGGTGACACACAAAGTATTGATAGTAATGAAGCCAAAGCTTTAAATAACGTTGAGGCATGTCTACATgaagacataaaaataaagtgtGAAAGTGAGTTATTTGAGgatCAAAATAATGAACTGGAGAAAGCAAccataaaaaatgaaattgaattaaCAGTTACTGAAACCCACTTGATCTCTAACAAACTTATTAATACTACTTCAACAGTCACTAATCCGCAGGACGGATTGATAAAGTCGCAAACCACTAAAACATTAGTTATGGAGATATTACCAATGACACATCCTGGAGGTGTGTCACTTTGCAAAATTAGCAATCCAGAGGAAATATTGCCAACGTCTTACATGAGTGATGATTGTACCCCAATGGATTGTGATGAATCGTTCCAACTTAATTCGATAACAGGGAATGTGATTTCCTTAGAGCAAGAGGCCTATGGTCTTTTAGAAGCAAAAAGTAAGATGGACAGATTAGATAGACCCTTCATTTGCACAAAATGTCCAAAAGCGTACAAATCCGCAAGTAATTTAAGAAGGCACAAACAAGTTCATGACACTATCGAAAAACGAGCAATGGGCATAATTAAGGGTCAAAAAACAAGAATAGCTAATATGAAGAAAAAGTTGAAGGAAGAGAAAAAATATACTCCCAAgataaaaaaggagaaaaaggcaaaaaggaaaacaaaagTTGAGAACTCTCCAGTTCAATCAAAGAACACCATAGTCGAAAGTGTTAAGAAGGAAGGTTATGAATGTACTTGTGGGAAAGTTTTCCGACGCAGAAGTCGCATGGAGACTTGTCTACGATCTCATAACATGTGCACAGATCTAATTTCTTATTTTCCATGTGTTACTTGCTCCAAACAATTTAAAGATAAAGAGGAATTGTCGCTTCATCGTAAAAGACTGCATAGAAAACGATTCCCTTGCAAGTTTTGTCCCACAGACTATAACACTCGAAAAGAATTGTTTAAGCATTTACAAATACATCAGAAAGTTCAAGTGATGGAGTATAAAGTATTATCAGAAGTTGTGAAAGGAAAGCAAAAGTTGAAATGTTTCATGTGCGCGAAAACCTGTACAGAATTATCGGAATTGAAGTCCCATGTGATGGACGACCATAAGGAACCATACATCTGTCCACACTGCAATGGCACTTTTTCGAAAATCATTGATTTTGGCAACCATACGAAAACCGATCACCCAGAAGTTGAGGGACAATCAGTTTTAGATGTCTTAGAAGCATTTTCAAAGTTGGTTAAGGCTTGGAAATGTGAAGAATGCGGAGTGCAATTCCATGAGGCTGACAAACTGGCGCTTCATCAAATAGAAAAGCACAGTCCAGATGTAAAAGTGGAATCACaatttcaatgtatagattGTCGAAGGGTTTTCATAAGTCAAAAAGGTTTAACGTCTCACAGACGCGTCCATCACAGCACAGAATGCGCGGATGATTCCGAAATGGTAGATAAAGGAGTCATGTGCATTGAATGTAGAAAGATTTGTAAAGACAGTAATGCTCTTACCTCACATATGCGTCTTCATTCCCTAGAAAGAAAGTACCCGTGCAAGTTTTGCGATTTTCGATTCGCAACGCCCGAGAAGAGAAAAGCTCACGCGGAACTGCATACAGGGGACATGAAATACGTGTGCTTTATATGTGAATATCAGTGTAGTTCAGAGAATCGTTTAAAACAGCACAAGATGTCGGTTAAACATCTGAACATGAAGGCGTTTTTGGCGACTGGGAAGTCACTTATTGATGAGGAACAATCCACGTCAAAAAGAACTGAAGCTGAGAGTGCTTTAGAGAAAGAAGAATGGGTAGTTGTTAAGGAAAATGAGGAAGCAGAAGaggaagacgaaagtgatggggATACCTCGTCCAATGCAGGTGAAGAATCAACGTGTAATGTATGTGGTAAGAAATTTAAAAGTGAATCGAAAATGTTAAGGCATCAGAACACGCATCCATTCATAGAAATTCCGAGCGATGATAAGCCTACTAGAATATTCTTTAAGTAA
- Protein Sequence
- MKDVPYTQYPTGNVNGIPSPIYRFLRKQPQKSDVISQNSNRKIMALQNIQSLDSKIPDDNLSKINIKQEIPHLEVNEDIQVKTEVDPHEYNVSIENPFENIQLEVKHEYVSSLNIDKQAQNKIVNENISSIVEKDREGAENYISLVTIFEKSNHKTLKETITNMYDGNIDIKQEEHVEGNSFYNSNFGDTQSIDSNEAKALNNVEACLHEDIKIKCESELFEDQNNELEKATIKNEIELTVTETHLISNKLINTTSTVTNPQDGLIKSQTTKTLVMEILPMTHPGGVSLCKISNPEEILPTSYMSDDCTPMDCDESFQLNSITGNVISLEQEAYGLLEAKSKMDRLDRPFICTKCPKAYKSASNLRRHKQVHDTIEKRAMGIIKGQKTRIANMKKKLKEEKKYTPKIKKEKKAKRKTKVENSPVQSKNTIVESVKKEGYECTCGKVFRRRSRMETCLRSHNMCTDLISYFPCVTCSKQFKDKEELSLHRKRLHRKRFPCKFCPTDYNTRKELFKHLQIHQKVQVMEYKVLSEVVKGKQKLKCFMCAKTCTELSELKSHVMDDHKEPYICPHCNGTFSKIIDFGNHTKTDHPEVEGQSVLDVLEAFSKLVKAWKCEECGVQFHEADKLALHQIEKHSPDVKVESQFQCIDCRRVFISQKGLTSHRRVHHSTECADDSEMVDKGVMCIECRKICKDSNALTSHMRLHSLERKYPCKFCDFRFATPEKRKAHAELHTGDMKYVCFICEYQCSSENRLKQHKMSVKHLNMKAFLATGKSLIDEEQSTSKRTEAESALEKEEWVVVKENEEAEEEDESDGDTSSNAGEESTCNVCGKKFKSESKMLRHQNTHPFIEIPSDDKPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01159954;
- 90% Identity
- iTF_01159954;
- 80% Identity
- -