Porl022170.1
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- -
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000070.1:7175214-7181772[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.34 86 5.9 2.6 1 16 160 175 160 178 0.84 2 9 0.002 0.5 12.9 0.1 3 23 188 209 186 209 0.86 3 9 0.0002 0.049 16.1 4.2 2 23 218 239 217 239 0.97 4 9 1.9e-05 0.0047 19.3 0.6 2 23 246 267 245 267 0.96 5 9 0.00037 0.092 15.2 2.9 1 23 275 298 275 298 0.97 6 9 6.5e-07 0.00016 23.9 0.9 1 23 303 325 303 325 0.97 7 9 4.8e-05 0.012 18.0 0.4 1 23 331 353 331 353 0.99 8 9 0.0032 0.8 12.3 2.8 1 23 359 381 359 381 0.95 9 9 1.4e-06 0.00034 22.8 2.4 1 23 387 409 387 409 0.98
Sequence Information
- Coding Sequence
- ATGTATTCGTATTGCACATCAGTAGAAGTCCAACAGAATGAAGACTTGCCTAAAACTGTATGTGAAGGTTGTTATGAACTTCTTATAAAGCTTTTCGATTTCAAACAAACTTGTATTAAATCCCAAAATACATTATTAGAATGtaaaaaatcagtaaaaacagaaaataatgtTCTGATAACTATAGAAGTAGACTCACACATTGTAGCTAGTGAAGATGAGTATGGCAATGAATTTGAAATGAGCAATGTGAAAGCTGAACAGGCTGAAGTTGGACCATGTAACAACTATGAATTTGCCAGTGATAAAAAGGAAATCGATAATACTAAtgaattacaaataaaagatGAATTATCTTGTGATAACTctacaaagaaaaaaatgtcaaaaagATTAAAAAAGTTAGCCTCGTCCAACCTACTGGTTGTTAAATCAgtgtcaaaaataaatttatcctCATCAAAGAagccaaaaatattttcatgcCAGTTGTGCAAGAAAAATTTTAGCTACCGCGAACGGTTCAAGCACACAAATTGGAGCATGAGGGCACCAATTTATTGTGCACCATGCGATAAGACCTTCATGACATGGAGTGGTCTGTGGCGGCATAACGAGAGCGAACATACTCGCGTCAGCCTCGGCAGCCTCAAGTGCCGCATTTGTGGCAAGACGTCCAAAAACAAGCACACTCTGCGCATGCACGAGAAATCGCACGCGAAACGTAGTCCATGTATATGCGACATTTGTGGAAAAACGTTTGTCTCCACCACTGTACTAAAGGCTCATTTGGAAACCCACGAGGAAAACAGGGAGCGAAGGTACGAGTGTGATCAGTGTGACAAGAAATTCTATTCAAACACAGTATTACTGTCTCATATATCAAAATGTCATAGAGGTAGAAGATTCATATGCCAAATATGCACATATTCTTTCTCAGAGAAGAGTAACTTAGTAAGACATTTGCGGTTACATGAAGGAAAGAAGCTGTTTAAATGCGATCTGTGTGAAAAATCTTACGTGGCTAGTTCGTCACTAGTCGAACATAAAAGAATGCACTCTGGAGAACGACCCTTCTCTTGTATTTATTGTCCTAAAACTTTCTCCGCTAAAAAGAGACTGAATGATCATCATAGAATCCATACAGGTGAAAAACCACATAGATGTGGCGTGTGCAGTCAGAGTTTCACTCAGCGAGGAACTCTAAATAGGCATATGAAAGTACACGAGAAATTCTCTTTGGCTCTCAATTAG
- Protein Sequence
- MYSYCTSVEVQQNEDLPKTVCEGCYELLIKLFDFKQTCIKSQNTLLECKKSVKTENNVLITIEVDSHIVASEDEYGNEFEMSNVKAEQAEVGPCNNYEFASDKKEIDNTNELQIKDELSCDNSTKKKMSKRLKKLASSNLLVVKSVSKINLSSSKKPKIFSCQLCKKNFSYRERFKHTNWSMRAPIYCAPCDKTFMTWSGLWRHNESEHTRVSLGSLKCRICGKTSKNKHTLRMHEKSHAKRSPCICDICGKTFVSTTVLKAHLETHEENRERRYECDQCDKKFYSNTVLLSHISKCHRGRRFICQICTYSFSEKSNLVRHLRLHEGKKLFKCDLCEKSYVASSSLVEHKRMHSGERPFSCIYCPKTFSAKKRLNDHHRIHTGEKPHRCGVCSQSFTQRGTLNRHMKVHEKFSLALN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01159920;
- 90% Identity
- -
- 80% Identity
- -