Porl040440.1
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- -
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000185.1:727184-733159[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0023 0.58 12.7 1.2 1 20 24 43 24 46 0.95 2 17 0.0016 0.39 13.2 1.9 2 23 117 139 116 139 0.95 3 17 0.00087 0.22 14.0 0.2 3 23 147 168 146 168 0.98 4 17 0.88 2.2e+02 4.6 1.2 2 23 173 194 172 194 0.94 5 17 0.059 15 8.3 1.1 1 23 198 221 198 221 0.96 6 17 0.00011 0.028 16.8 1.2 2 23 228 250 227 250 0.95 7 17 0.014 3.4 10.3 0.5 2 23 257 278 256 278 0.94 8 17 1.8 4.6e+02 3.6 5.7 1 23 323 346 323 346 0.94 9 17 0.24 61 6.3 0.1 2 23 372 394 371 394 0.89 10 17 2.3 5.8e+02 3.2 1.6 3 23 417 439 416 439 0.90 11 17 0.044 11 8.6 0.0 1 23 445 468 445 468 0.92 12 17 2.7e-05 0.0068 18.8 3.7 2 23 474 496 473 496 0.94 13 17 0.13 33 7.2 0.1 2 23 502 524 501 524 0.92 14 17 2.8e-05 0.0069 18.7 0.7 1 23 531 554 531 554 0.93 15 17 0.00012 0.03 16.7 0.5 1 23 560 582 560 582 0.94 16 17 0.0019 0.48 13.0 4.4 1 23 588 610 588 610 0.97 17 17 0.00076 0.19 14.2 2.6 1 23 616 638 616 639 0.94
Sequence Information
- Coding Sequence
- ATGAGAAAGAACGTTATCCAAATTCTGCAGAATTCAACCCTGACGCCCTTCAGATGGCTGAGGAAATTTTACAGATGCTTCTTCTGTCAGGAAGTTTTCAAAACACCTAAAGAATGGAAATCACATCAGCCACTGCATAACTTTACTAGGGAACTGCACGCGGCCATGAATAGATTTTGGGAGTCTGTGGTCTATGTGGATGTTTCGAACATTGCTTGCAAATTGTGTACGGATGCAATAACAGATTTAAACGAATTGATAGGTCATCTAGTGGACAAGCACGGTATTAAGTTTAACGAAGCAATCGGTAGATGCATGAGGGGGTTCAAATTGGACGACAGTTTCGTCTATTGCGTTTACTGTGACAAGAAATTTTACACGTTCAGTCACGTTCTAGTGCACACGAATAAGGACCATAAGGGTGGAAATGATGTGCTGTGTGACATCTGCGGGCAGTATTACAGAAGTTTGATCTATCTGCGCTATCATATCCGATCGGAACACAGTGACGGCGTTAAATGCAGGCAATGCGGTACGTTACTCCGGTATACAAAACTAAGAACGCATATGCAGAACGTGCATGGGAAAAAATACAAATGTTTTAATTGTCTTGAGATGTTCGAGACGCAGTACAAAAGAGCGCAGCATACAATGATCGTGCATGGTGATAGAAAGGTGATCAGTTGTCAATACTGTACCAAGACGTTCGTGTATAGAAGCACAATGTTGCGGCACGTGAGGGAGACGCATCTGCGGGAGAGGAACACGGAATGCAGTATATGCGGCTGGAAGTCGTTCGCAGTGCATGGCTTGCAGCGGCATATGATAAAACATAgaaGACAGCCCTTGAAGCCCATAATCGACGACCGACTCGCAGAAAAAAGGAGAAAAGACGAGCTGGCAAAACTTCTTGCAATTATTCTAGAATATTCGACAATAATGCCGTTTCGGTGGTATGCGAATAAGTACATGTGCTTTTTCTGTTGCTGTCCATTCATAGACAGTTCCAAGCTTAAGCAGCACACGAAAGAAGAGCATCAAGGTGCTAAATTAAGGCATCTCTTGCGTAGTATCGTAGGACACAGTAGAATAAAGCTGGACTTGTCAGAGATATCATGTAGGAAGTGTCCAAAACCGATCAGAACGTTGGAGGAGTTTTTGAACCACGCTTCTGAAGTCCACGCGGTGAGGGTAGATGAAGAAGTCAGCAGACACCTTTTCGCTTTTAAACTGTCCGACGATGGAATGTGCTGTATTGAATGCGGGCTTCAGTTCCGTTTTTTCGGGCCACTTTTGGCCCACGTACATAAATATCACAACAAGACTAGCACATTTCTATGCGAAATATGCGGCCAGGGTTTCGTGGCTAAGGCGAATATAGACAGTCACGTAAAAAACGTGCACTCAACAATTAGTTGCCACTGTGAGAAATGTGACAAGACTTTCCCTTCGAATTACGCCCTCAACAACCATTTAATGAAGATACATAAATCTGATAAACTTAAATGTCCCAAATGTCCCGAGATTTTGGGGAGCAGGTACTTAAAAAAGCGACATCTAGCGTTGGTGCACGACGTGAAAAGTTCGCAGTTTGCCTGCGAGCAGTGTTCAAAGGTGTTCACAACTAAAAGTACCCTCGTCCAACACAATTTAAGAGTGCATCTAAAAGAGAAATCATTCGCTTGTGAGATTTGTGGCTTCAAAGTATTCAGTAAGGACTTACTAAGACGGCATATGGTAAAACACGACGACGCGAGGCCTTTCCAATGcgaatattgcaagaaaagtTTTCAGAGGAAGAAGACCTTGGACTTCCATAGAAGAATACATACGAATGACAGAAGATACGCGTGCACAGAATGTGATAAAGCGTTTGTACAAGTAACTAGTTTAAAACTGCATTGTAGGGTACACCATTCACTTGTGAATGGGGGTATTCACtga
- Protein Sequence
- MRKNVIQILQNSTLTPFRWLRKFYRCFFCQEVFKTPKEWKSHQPLHNFTRELHAAMNRFWESVVYVDVSNIACKLCTDAITDLNELIGHLVDKHGIKFNEAIGRCMRGFKLDDSFVYCVYCDKKFYTFSHVLVHTNKDHKGGNDVLCDICGQYYRSLIYLRYHIRSEHSDGVKCRQCGTLLRYTKLRTHMQNVHGKKYKCFNCLEMFETQYKRAQHTMIVHGDRKVISCQYCTKTFVYRSTMLRHVRETHLRERNTECSICGWKSFAVHGLQRHMIKHRRQPLKPIIDDRLAEKRRKDELAKLLAIILEYSTIMPFRWYANKYMCFFCCCPFIDSSKLKQHTKEEHQGAKLRHLLRSIVGHSRIKLDLSEISCRKCPKPIRTLEEFLNHASEVHAVRVDEEVSRHLFAFKLSDDGMCCIECGLQFRFFGPLLAHVHKYHNKTSTFLCEICGQGFVAKANIDSHVKNVHSTISCHCEKCDKTFPSNYALNNHLMKIHKSDKLKCPKCPEILGSRYLKKRHLALVHDVKSSQFACEQCSKVFTTKSTLVQHNLRVHLKEKSFACEICGFKVFSKDLLRRHMVKHDDARPFQCEYCKKSFQRKKTLDFHRRIHTNDRRYACTECDKAFVQVTSLKLHCRVHHSLVNGGIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -