Porl026952.1
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- -
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000096.1:968667-981721[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.6e-06 0.0024 20.2 2.3 1 23 147 170 147 170 0.97 2 17 0.011 2.8 10.5 0.4 2 23 183 205 183 205 0.97 3 17 0.0005 0.13 14.8 1.3 1 23 214 237 214 237 0.97 4 17 4.3e-05 0.011 18.1 1.4 1 23 249 272 249 272 0.96 5 17 3.9e-05 0.0097 18.3 0.8 2 23 302 324 301 324 0.97 6 17 0.0011 0.27 13.7 1.2 2 23 334 356 333 356 0.96 7 17 0.026 6.4 9.4 0.7 3 20 362 379 361 381 0.93 8 17 0.0034 0.86 12.2 0.5 2 21 386 405 385 408 0.94 9 17 0.3 74 6.1 2.2 3 23 418 439 417 439 0.93 10 17 0.00047 0.12 14.9 3.1 1 23 444 467 444 467 0.93 11 17 0.00014 0.036 16.5 1.3 2 23 478 500 477 500 0.96 12 17 0.0015 0.38 13.3 2.5 1 23 526 549 526 550 0.94 13 17 0.37 93 5.7 0.0 2 23 556 577 555 577 0.91 14 17 0.024 5.9 9.5 1.2 2 23 583 604 582 604 0.97 15 17 3.1 7.8e+02 2.8 0.7 3 23 612 634 610 634 0.90 16 17 0.0041 1 11.9 0.2 1 23 670 692 670 692 0.98 17 17 0.15 38 7.0 2.0 1 23 698 721 698 721 0.96
Sequence Information
- Coding Sequence
- ATGGAAGGTGTTGAAGACTTATCGGTTAAAAGAAAAGACCCCACATCTTTTTTGCCCGAAGAGCCTATGTCATACGAAATCaaagtaaaaaagaagaaaaagaaaaagacgcACAGCCAAGAAGATCCATTTAAAGATATAGAGGAGAAGCCAGTAGTACTGCCCACAGAAATAGCGCTAGATCCCGAAGTGAATATTAAAGTTGAGAATATTGAAGTAGAATTGGATTTTAACGATttcgCTAATGATAATGGACTGATGTTGGAAGGCCCACAAAGTGAGGAGAGCCAAGAACCCGTAGTCAAGTTAGAGCAACAGAATCGTGAGGCAGTAATACTAACATTCGAGAGTGTGACTCATGATAAATCAGTGTTCGGTTATGGACAAAATGCTCCCCTTCTATGGTGTCGGATCATAGTTTTCCAACGCGCGTTCGAACATGTCTGTGATCACTGTGGGATGTCCTACGATCAAAAAACAAGCTTAATCGCGCATATTAGGAGGAAACACGGACCAAACTCGATGCCTGATGACAGAGAAGAGAGGACTTGTGATATTTGTGCTCTAGTGTTCAAAGGCATGGCGAGGTTGAGAATGCATATGCGAAGAAAGCACGGGTCCTTCGAGGAATCCTTCCAACATGTTTGCAAAGATTGTGGTCTTACGTACGACAAATATAGGAGTTTAGTAGTCCACATTCAGAGGAAACACTCGACTAACAAGAAACCAGTGGTCAATCAGTGGTTCAACTGCCCCTTCTGCCCTAAAGTATTCACCAAACGCGAGACATATGCGAGACACGTGCAGAGAAAGCATCGAGTGAAAGAAGATGATGGTATGAAACAGGAGAATGTAGATCAGGAGTTGTTGGAGAATTGCAAGAATGAAGAGACTGGCGAAATAACGTGCAAAGAATGCCCTCTGGTATTTTCTTcgttaaattttctaaaattgcatATGAGAAGAAAGCACAATGCGCTAAAGGAAGATTTTAGACTTAAATGCAGAATTTGTAATTTGTCCTATGATAAGATTGAAAGCTTAAAGCGACATGTAAGAAGAAAACATGACAAGGGGTCGTTTTGTGAAGTGTGCAATAAACAGTTTGATACTAGAGAATTGTATTTAAACCATACACATGTTAAAATGATTAAAGAGTGTTCTATATGCGGATTGATTTTCGCGTCCCAAGGCGGACTGGGTAAACATTTGCGTTGTACCCACAAAATTGACGAACCTAAAACTGTATTCTGCAATTTGTGTAACGAAGGTTTTCACGATAAAAGGCAGCTGAAACCGCACTTTATGAAAGTGCATTTAAACGTGTCATATACTTGCCGTTATTGCAAGAAAGTGTTCAAAGCGAAAGAGAGTTATAGACGTCATGTCCTGTTTCAACAtcctgtaaataataaaagtagtcAATCACAAAAATGCGAGCACTGTACAGAGACGTTTCCAGACGAAGTGGAGTTATGTCGACATATCAGTATAGCCCACGGGAAACCGCCCGACGAGCCTCCAAACACAGAAGTCGTTTTGATTAAGAAAGAGGAAATGGATTTCAAAGAGTCCTTCCAATGTTCGAAGTGTACCGAGTCGTACTTTACTTGGGAGGAACTACGTTTGCACTACGAACAAAATCATCACACGGTCGGTGATAGCCAGTGCCAGATATGCGGGGAAATTGTGCCAGGGAACGAGCTTCAAAAGCACATAAAGAGTGTGCACACGCAAACGGTACTCCAATGCAAGTACTGCGATTTTGAAACGTCGATGCGGGCGAGCATGACTCAACACACACTAAGGCACAAAAACGCCACAACTTTAAACTGTGACTTCGACGGTTGCAAATACAAGACGTTCTACGAGGGCGCGATGGTGAAACACAAAAGGAAACATACGGAATTGGGCGTCAAATTGCAGTGCTCGCAATGCGCGTTCCAAACAATGAACAAATACGTCTTGAAATATCACGAAGAGGCGCATTTGACCGGCAAGAAGAAATACACTTGCGATCAATGCGACTACGCGACAATCTTGCCGGCTAATTTAGTACAACACAGGTACAAACACTCTGTGGAGAAAAAGTTCAAATGTGAGGTGTGTCCGTTTGCGACAAAGTACAACACATCCTTACGTTTCCACGTCAAGAAAAAACATTGTGATCTCCCTTCTTTCAGTTAA
- Protein Sequence
- MEGVEDLSVKRKDPTSFLPEEPMSYEIKVKKKKKKKTHSQEDPFKDIEEKPVVLPTEIALDPEVNIKVENIEVELDFNDFANDNGLMLEGPQSEESQEPVVKLEQQNREAVILTFESVTHDKSVFGYGQNAPLLWCRIIVFQRAFEHVCDHCGMSYDQKTSLIAHIRRKHGPNSMPDDREERTCDICALVFKGMARLRMHMRRKHGSFEESFQHVCKDCGLTYDKYRSLVVHIQRKHSTNKKPVVNQWFNCPFCPKVFTKRETYARHVQRKHRVKEDDGMKQENVDQELLENCKNEETGEITCKECPLVFSSLNFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDKGSFCEVCNKQFDTRELYLNHTHVKMIKECSICGLIFASQGGLGKHLRCTHKIDEPKTVFCNLCNEGFHDKRQLKPHFMKVHLNVSYTCRYCKKVFKAKESYRRHVLFQHPVNNKSSQSQKCEHCTETFPDEVELCRHISIAHGKPPDEPPNTEVVLIKKEEMDFKESFQCSKCTESYFTWEELRLHYEQNHHTVGDSQCQICGEIVPGNELQKHIKSVHTQTVLQCKYCDFETSMRASMTQHTLRHKNATTLNCDFDGCKYKTFYEGAMVKHKRKHTELGVKLQCSQCAFQTMNKYVLKYHEEAHLTGKKKYTCDQCDYATILPANLVQHRYKHSVEKKFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01154433;
- 90% Identity
- iTF_01159896;
- 80% Identity
- -