Porl040384.1
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- -
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000185.1:171572-176001[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0011 0.29 13.6 0.2 1 23 47 70 47 70 0.95 2 29 0.97 2.4e+02 4.4 3.1 2 23 97 119 96 119 0.96 3 29 0.0074 1.9 11.1 3.2 1 23 141 163 141 163 0.98 4 29 0.00036 0.091 15.2 0.3 1 23 167 189 167 189 0.97 5 29 9.5 2.4e+03 1.3 0.6 1 23 194 217 194 217 0.76 6 29 0.18 44 6.8 0.1 1 21 223 243 223 246 0.87 7 29 6.9 1.7e+03 1.7 0.3 1 23 309 331 309 331 0.89 8 29 0.0059 1.5 11.4 0.5 1 23 401 423 401 423 0.98 9 29 2.8e-05 0.007 18.7 2.7 1 23 427 449 427 449 0.98 10 29 0.00058 0.15 14.6 0.6 1 23 454 477 454 477 0.97 11 29 0.12 29 7.3 2.5 1 23 483 506 483 506 0.96 12 29 0.36 91 5.8 0.2 1 23 564 586 564 586 0.94 13 29 1.3 3.3e+02 4.0 0.0 2 23 610 632 609 632 0.92 14 29 0.014 3.5 10.2 4.9 1 23 654 676 654 676 0.97 15 29 0.0019 0.47 13.0 2.3 3 23 682 702 681 702 0.97 16 29 0.12 29 7.3 1.2 1 23 709 732 709 732 0.95 17 29 0.17 43 6.8 0.7 1 23 738 761 738 761 0.94 18 29 0.062 16 8.2 1.5 1 23 767 790 767 790 0.96 19 29 0.014 3.5 10.2 0.8 1 23 796 818 796 818 0.98 20 29 8.1 2e+03 1.5 1.0 1 23 881 904 881 904 0.89 21 29 0.0016 0.4 13.2 0.3 2 23 927 948 926 948 0.97 22 29 0.013 3.4 10.3 4.5 1 23 970 992 970 992 0.97 23 29 0.00017 0.042 16.3 0.6 1 23 996 1018 996 1018 0.98 24 29 0.023 5.8 9.6 0.1 1 23 1023 1046 1023 1046 0.96 25 29 9.2e-05 0.023 17.1 2.0 1 23 1052 1075 1052 1075 0.98 26 29 0.08 20 7.8 1.2 1 23 1082 1105 1082 1105 0.95 27 29 0.073 18 8.0 4.1 1 23 1111 1133 1111 1133 0.95 28 29 1.3e-06 0.00032 22.9 1.0 1 23 1139 1161 1139 1161 0.99 29 29 4.5e-06 0.0011 21.2 1.5 1 23 1167 1189 1167 1190 0.96
Sequence Information
- Coding Sequence
- ATGCGAAGACGCCGACGTGCCAACAACCAGCTACCGGAAGAGTCGGAGAGGCGAATCTCGAAAACAATGATGAGAAGGAACACCATGGCCATCTTAGAATGTTCCACTGCTTGGGCCTTTCGATGGTTTCGCAACGCCTTTTTCTGCTCCTATTGCGATGAAAAATTCGTCGACCCGCAGCCATTGCGTGAACACGTGCTCTCATCCCACATCAGCTATTCCCCCACCGTGCGTATCTTCTCGAAGCTGACCGAGAACAACATGGTGAAAATCGACATCACCAATCTAAAGTGTAGGTTGTGTAACTATGGATGCCATAGCATAGACGTActcaaaaatcatttaaagaCTGCACATAGGAAAACACTTAATAGTGAATACAGCGATGGAGTTCTGCCATTCAAATTAGATGAGATCGGGTTCCACTGTCAGGTGTGTTTTGAGTATTTCACTAGTTTCGCGAAGTTGAATGAACATATGAATTCGCACTATCAGAATTACATTTGTGACGCCTGCGGGAAGGCTTTCATTTCGAAATCTAGGTTCAGGACTCACGTGGAGTCACACGAGATCGGGAGTTTTCCTTGCGGTGAATGCGACGAAGTTTTACAGACGCGAGCGGCCCGTACCTGTCATAGAATGAAGGTGCATAGAAAAGGTATTCGGTACACGTGCCCTCGATGTCCTGCAGTGTTCACCGCGTACTACGCGAGAGCGAGGCATTTAGTGGACGGGCACGCACAACAAAGAATGGATTACGATTGCACCACGTGTGgacaAGAAGAAACCGCTCCGGATACATCGGTAAAAGAAAAGTTTGATATAAAATGGAAAAAGATACGAAAAGTTGCGGAAGACAAGGTTAACGCAGCTATTATCTTGCAGAATTCTAATGCCGTTGCTTTTAGATGGCATCGTGGAAGGTTCATGTGCGCTTACTGCCCGCTCATTTGCCCCAGTGTCACAGAGATACGTCTGCACTCCAATGAACACGCTAACAAGCAAGATATCTTTCTAAATAGCGGAGTGCGCAATTCTTTCCCATTAAGAGTTGATATCACGGATTTAACTTGTATGCTATGCTTTGACAGAATcgaaaatttggaaaattttaaGGTTCATCTgtcaaataaacatttaaaattactcAACCCCGACTATAGTGACGGCTTAGTACCATTCGTGTTGACGGGTAAAGACTATAAATGCGTTAATTGTGGCACATTGTTTGAGAGCTTCATGAGTCTATATATTCACATGAATGAACATTACCAGACATACGTGTGCTATACCTGTGGTAAAGGTTATTCCAGCAAACATAAATTAATGGCTCACCAAAAGTCCCACGAATCAGGTCAATTCGAATGTACCAAATGCGGCAATGTGTTTTCAAACCGGGTGGCCAAATACAGGCATATGTCCAGCGCTCACGGGCCCAAGGAGCGCTATAGATGTCCAGTGTGTGGAGATCACTTTGATTCCTATCATTCCCGCTTGAGACATCTCGACAGAGTACATGGACAGAAGATTGAATACCGCTGTAGTATGTGCCCTTCTGTATTCGGAACTGggCCCAAGGAAAACAATGTTAAATGGAAACCAAGACGGAAGTTTAACGATCACAGGGATAACGCTGCTATTATTCTCGAATGTTCCAACGCGTGCCCATTTAGGTGGAAGAGCGGTGCGTTCGTCTGCGCGTTCTGTCCGACTTCGTTCGGGGACTTTACGGGTGTCAGGGAACACACTTCAGAACACCCGAACAGGGTTGAAGCAGTACGCTTAGCGCGTCCCTTCGACACAATAAAAGCTGACATAACAAATCTCAGATGCGATCTATGTTTACAAATCGTGAAGGATTTAGATGAGCTCGCCGATCATCTAATCGGTGGACACGAGAAACCTATTGTCAAAGACCGCGGCGTCGGCATCACTCCTTTCTATTTGAAAGGCAAAGAATTTATCTGTTCGCACTGCAGCGAACACTTTGATTTGTTCACTAATCTGAACACTCATATGAatcaacattataaaaataatatatgctATAAGTGCGGTAAAGCGTTCTCGGCCTCTCACAGATTGCATGCACACATGGTCACCCACGAACTGGAAGACGATGGGTTCAAATGCACTAAATGCGATGATATATTCGCCACTCGCAAACTCAGGAGTAGCCACATGGCCTACATGCACGGACCAAAGCTGAGATATAGGTGCCCGTATTGTAAAGATAAGTTTAAGGCGTACGGCGACAGAGCAAAACATTTAAAGGAAGTCCACGACAGGAAAGTGGAGTATCCTTGCCACTTATGTCCGGCAGTGTTTGCTCTATGTAACCAGAGAACGAAACACATCCAGCAAGTTCATGTAAAACACAAACCGTTTCAATGCGAGTATTGTGTGTTTAAGTCGTCGACGGCGGCGAGGTTGAGGAGTCACATGGTCAAACACATCGgaAGAAAATGTGAAGACATACAGATTAAGCAGGAAGTGGAATCTGACTCTGAGAATATCAAAGCTGCTGTTATTGTGCCAGCTAGGGACGCGGGCAACGAGAGGCGCGCCGCGTTCcggaataatattaaaattatattagaatcGTGCACGGCATGCCCGTTCAAGTATAGGAAGGGCACGTACTTGTGTTTCTTCTGTAAAACTTCGTTCCTCGAGCCGGAACGCTTACGCGAGCACACCCAGCAGCTACACTCTGACGTTAAGCAACTGTTGAAGCCGCGCAAGTACGAACCGCTGAAGATTGATTTCGCTGTGACGACCTGCAAAATGTGTGGCACTGCTATATCCGACTATGAGATGCTGAAATCGCATCTGCGCGAACACGGTAAAGTGCTCGACTGCACGCACGGCGACAGCGTGCTGCCTTATAGCCTAACTAAGGACGACCATCGTTGTCAGATATGCGGCAAGCGGTACGAGATGTTCCTGAGTCTCCACAAGCACATGAACGATCATTATGAACACTTTATTTGCGAAACCTGCGGGAAACGTTTCGCGACTTCGCAGCGTATGGTCAATCACGCCAGAACGCACGAGCGTGGCGAATTTCCCTGCAAACGGTGTCAAGATTCGTTCCCTTCATACGCGTCTCTGTACGCCCACATAGCCAAGGTGCACCGATCGAATAAACGGTACAAGTGCCCAATATGCGACGAAAAGTTCGCCTCGTATAAGCACAGGCTAAAACATTTGAACACAGTACATGGAGAGAAGACAGCTATATTCCCTTGTCCGTCCTGCCCGCGTGTCTTCGACCTGTGCAGTCGACGCACAGCCCACATTCGCTTCCAGCACTTGCAGGAGCGGAACCACTCATGCTCGTTGTGCTTCATGAAATTTTTCACTAAATATGAGCTCCAAGAGCATTCGATAAAGCACGGAGGGGAGAGGATTTATCAGTGTGACGTGTGCAAGAAGTCCTATGCCCGGTTGAAAACCTTACGAGAACACATGCGGATACACAACAATGACAGACGATTTGTGTGCCCCGTCTGCGGGCAGGCGTTCATACAAAATTGCAGTCTGAAGCAGCATGTCAGGGTTCACCATCCAAGTCACCCGAAAACCGACGTCTTTTAG
- Protein Sequence
- MRRRRRANNQLPEESERRISKTMMRRNTMAILECSTAWAFRWFRNAFFCSYCDEKFVDPQPLREHVLSSHISYSPTVRIFSKLTENNMVKIDITNLKCRLCNYGCHSIDVLKNHLKTAHRKTLNSEYSDGVLPFKLDEIGFHCQVCFEYFTSFAKLNEHMNSHYQNYICDACGKAFISKSRFRTHVESHEIGSFPCGECDEVLQTRAARTCHRMKVHRKGIRYTCPRCPAVFTAYYARARHLVDGHAQQRMDYDCTTCGQEETAPDTSVKEKFDIKWKKIRKVAEDKVNAAIILQNSNAVAFRWHRGRFMCAYCPLICPSVTEIRLHSNEHANKQDIFLNSGVRNSFPLRVDITDLTCMLCFDRIENLENFKVHLSNKHLKLLNPDYSDGLVPFVLTGKDYKCVNCGTLFESFMSLYIHMNEHYQTYVCYTCGKGYSSKHKLMAHQKSHESGQFECTKCGNVFSNRVAKYRHMSSAHGPKERYRCPVCGDHFDSYHSRLRHLDRVHGQKIEYRCSMCPSVFGTGPKENNVKWKPRRKFNDHRDNAAIILECSNACPFRWKSGAFVCAFCPTSFGDFTGVREHTSEHPNRVEAVRLARPFDTIKADITNLRCDLCLQIVKDLDELADHLIGGHEKPIVKDRGVGITPFYLKGKEFICSHCSEHFDLFTNLNTHMNQHYKNNICYKCGKAFSASHRLHAHMVTHELEDDGFKCTKCDDIFATRKLRSSHMAYMHGPKLRYRCPYCKDKFKAYGDRAKHLKEVHDRKVEYPCHLCPAVFALCNQRTKHIQQVHVKHKPFQCEYCVFKSSTAARLRSHMVKHIGRKCEDIQIKQEVESDSENIKAAVIVPARDAGNERRAAFRNNIKIILESCTACPFKYRKGTYLCFFCKTSFLEPERLREHTQQLHSDVKQLLKPRKYEPLKIDFAVTTCKMCGTAISDYEMLKSHLREHGKVLDCTHGDSVLPYSLTKDDHRCQICGKRYEMFLSLHKHMNDHYEHFICETCGKRFATSQRMVNHARTHERGEFPCKRCQDSFPSYASLYAHIAKVHRSNKRYKCPICDEKFASYKHRLKHLNTVHGEKTAIFPCPSCPRVFDLCSRRTAHIRFQHLQERNHSCSLCFMKFFTKYELQEHSIKHGGERIYQCDVCKKSYARLKTLREHMRIHNNDRRFVCPVCGQAFIQNCSLKQHVRVHHPSHPKTDVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -