Porl040449.1
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- -
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000185.1:758851-762457[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.1 25 7.5 0.2 3 23 2 22 1 22 0.96 2 24 2.4 6.1e+02 3.2 0.2 3 23 51 72 49 72 0.95 3 24 0.16 41 6.9 2.1 2 23 93 115 92 115 0.94 4 24 0.00033 0.082 15.4 3.7 3 23 122 142 120 143 0.95 5 24 0.00034 0.086 15.3 1.5 1 23 147 170 147 170 0.96 6 24 0.0055 1.4 11.5 1.4 2 23 173 195 172 195 0.96 7 24 3.8 9.4e+02 2.6 0.2 2 20 201 219 200 221 0.91 8 24 0.00046 0.12 14.9 3.4 1 23 272 295 272 295 0.94 9 24 9.6e-05 0.024 17.0 3.7 3 23 337 357 335 357 0.96 10 24 0.0093 2.3 10.8 0.0 2 23 385 407 384 407 0.91 11 24 0.009 2.3 10.8 1.0 1 23 427 450 427 450 0.96 12 24 1.6e-05 0.0041 19.5 1.1 1 23 455 478 455 478 0.97 13 24 1.8e-05 0.0045 19.3 1.1 1 23 483 506 483 506 0.95 14 24 0.0043 1.1 11.8 2.2 2 21 509 528 509 531 0.95 15 24 0.11 27 7.5 5.3 2 21 538 557 538 558 0.95 16 24 0.0029 0.72 12.4 1.3 1 23 613 636 613 636 0.94 17 24 4.2 1.1e+03 2.4 0.0 2 23 664 686 663 686 0.78 18 24 0.57 1.4e+02 5.1 0.1 2 23 709 732 708 732 0.94 19 24 4.6e-05 0.012 18.0 0.3 3 23 739 760 738 760 0.94 20 24 0.0047 1.2 11.7 5.0 2 23 765 787 764 787 0.93 21 24 0.0016 0.4 13.2 2.8 1 23 792 815 792 815 0.97 22 24 4.1e-06 0.001 21.3 5.2 1 23 819 842 819 842 0.97 23 24 0.00034 0.086 15.3 0.3 3 23 850 870 848 870 0.96 24 24 6.8e-05 0.017 17.5 0.6 1 23 876 898 876 898 0.97
Sequence Information
- Coding Sequence
- ATGTGTTTTTATTGCGGGGAGGATTTGCCAGAGTACAATGAACTGAGAAAGCATACGAAAGCGCACGGCTCGTGTTCTGAAACTGATCGAGCAATTAAACTCGTTAAAGCTGGCGATGCTGAAGTTAAAATCGATGTATCGAACATAGCTTGTGAATTATGCGAAGACACGtttaacgattttgatgaaatagtcGATCATTTGCATACTAAACATGGACTATCGTATGATAGAGAGGTGCGTTTAGAAATAACGAAATACCGGCTCGCAGATCTCAAATGTTTACTTTGTGATCAACAATTTAGTTACTTCAATAAATTGGTGATACACGTAAATAATTGTCATCCGAACCAATGCTTGTTATGTCATGAATGTGATCAGAAATTCAATAAAAGACGGGACTTAGATGCACATATTAGATCCCATCATAAAAGAGATTACACTTGCTTAAAGTGTTCCGTCACGTTCAAATCCTATTCCGAGCTACAGACTCATAAAATGAACGCTCACGCGTCTTCGTGTAATATTTGTTTCAGACAGTTCTCTTCAGCAAACAAAAGGTTAAAACATATGAAGGTAGATCATGTCTCTGATGCTTTACAGTGTGGATTCTGCCTTAAAGTTATGACTACAAAGCAGGGTTTCCTGCGCCACGCAACAACTTGTACACGCATTGTTGATGGCGTTAAAATATCCGATCCCATTTTAGTAGATGACAAAGAAAAGAAACCTTCGGTTAAGCAAATAAGAAATGATTTAGCTTGCATCCTAAATATGTCTACCGCTATCCCTTTTAAACATTACATGAGTAGATTTAGATGTTTCTATTGTTCCAAAGATTTCACGGATTGCGATGATCTAAAGCAACACACTGTTATGGAGCATCCTCTCTATGAAATTCCGCAAGGGCCGTACGAGAACTGTACCTCTGAGAGAAGGAGGAAAAACTTGCAAATTCTGTTCAACAACACAACTATTTTGCCGTTCAAGTGGCGAGGAAGATGCCTCTGTTTTTATTGCGGAAAGAGTTACACGGATTATACGGATTTGAGGAAACACACCCAATCACACGGCCCTTGCACCACGAAAGACTATTCATTGAAACTAATAAAAGGAAAtcacattgaaattaaaatcgaTGTCTCGGATATCACGTGTGAAATTTGCAATGAACCTTTCACTAGATTCGACGAAATAATTGATCATTTAATTGGAAAACACAACATGGACTACGATAAAAGTATAGACACGCCTCTTCAAGAATATAGACTTTCGGATTTCCGTTGTCTATTTTGCGACCAACAGTTTACTTACTTCGGATATTTGGTGAATCATGTCAACAACGTTCATCcgcaaaataattatgtttgtaaTGATTGCGGTGCGAGTTTCAATAAGAAAAGAGATTTGGCGCTGCATTTACGACATAACCATCGCCAAGGAGGATACTCTTGTCCAGAATGTCCACAGAGTTTCGAATCTCATGGCCTTCTTCGTAAACATCAAAACGATTTCCATTTCAGAAAATGTAAACGTTGCGGGATGAACTTTGCTTCCTATAGTCTACTATTAAAACATATACAATGTGATCATCCAGATGACGCTAGCGCCAAATGTCCGCATTGCTCCAAACAATGCCACTCGTCTCAAGGTTTAAAACAACACATAAATAAGTGTAAAGTTAATACGCTTGTACAAATAGATCAACCTGTAGATAACCTTACCCTCGACAATATGCTGCAACCGAAAAAGAAACAAAACGTCTTACAAATACGACAGAATATTCAGTGCGTTCTGAACATGTCTACAGCGTTACCGTTTAAGTTCTTCGCGAAATATTACTGTTTTTATTGCTCGAAGAAATTCGTTGAATTTGACGAACTAAGGGAACACACGTTACTAGAACATCCTGTATGCGATTTAAAGTCAAAGAGCTTGAAGAAATGTAAAGGAGACAGAATAACCGTAAAAGTAGATATAACAGAACTGAGCTGTAAAATTTGCGGGCAGCCTATGGACAATTTAGACATTCTAATAGATCACTTAATCTCAAAACATGACGCCAACTACGACAAATCTGTAACGGGCTGTCTAGAGCCGTACAGAGTGATGAAAGACAACATGCCGTGCCCGATATGTCCAAATCGCGTGTTCAGATACTTTGGAATACTACTTAGGCATATAAACTCTGAGCACAGTAACAACAACAGGATCTGCGACTTTTGCGGCCGCAGTTTTAAGAACGTAACAAATCTAAAGGTGCATATTACTTACGCACACACCGGCGCCTGCGAGTGCAACATTTGCGGCACGAAGTACAAGAATCAGTGGTGTTTGAGCCGGCACAAAGCGAAAAGCCACAACGCGAAAGATTACAAATGTCCGAAATGTCCAGAGTTTTTCCAGTCAGAGTACCACAAGCAAAAACATCTGATCAAAGTTCACGACATCGGTCACAAGTGTACGTACTGCGGGAAAATGTTCACTAGAAACTCGTTCATGAAGGACCATATACGTAGGACTCATCTGAAGGAGAAGAATGTTATCTGTTCGGTCTGCAACGAGAGATTCTTCGACAACTACCTGCTGAGAATGCACATGGTGAAGCACGAGGGCGAGCGGAAGTTCAGCTGTGAAGTTTGCGGCAAAGCGTTTCTTAGGAGGAGCAACCTCAGTTCGCATAAGGAAATGCATAAGAAGTATGGACATTTACAGCCGTAA
- Protein Sequence
- MCFYCGEDLPEYNELRKHTKAHGSCSETDRAIKLVKAGDAEVKIDVSNIACELCEDTFNDFDEIVDHLHTKHGLSYDREVRLEITKYRLADLKCLLCDQQFSYFNKLVIHVNNCHPNQCLLCHECDQKFNKRRDLDAHIRSHHKRDYTCLKCSVTFKSYSELQTHKMNAHASSCNICFRQFSSANKRLKHMKVDHVSDALQCGFCLKVMTTKQGFLRHATTCTRIVDGVKISDPILVDDKEKKPSVKQIRNDLACILNMSTAIPFKHYMSRFRCFYCSKDFTDCDDLKQHTVMEHPLYEIPQGPYENCTSERRRKNLQILFNNTTILPFKWRGRCLCFYCGKSYTDYTDLRKHTQSHGPCTTKDYSLKLIKGNHIEIKIDVSDITCEICNEPFTRFDEIIDHLIGKHNMDYDKSIDTPLQEYRLSDFRCLFCDQQFTYFGYLVNHVNNVHPQNNYVCNDCGASFNKKRDLALHLRHNHRQGGYSCPECPQSFESHGLLRKHQNDFHFRKCKRCGMNFASYSLLLKHIQCDHPDDASAKCPHCSKQCHSSQGLKQHINKCKVNTLVQIDQPVDNLTLDNMLQPKKKQNVLQIRQNIQCVLNMSTALPFKFFAKYYCFYCSKKFVEFDELREHTLLEHPVCDLKSKSLKKCKGDRITVKVDITELSCKICGQPMDNLDILIDHLISKHDANYDKSVTGCLEPYRVMKDNMPCPICPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKNVTNLKVHITYAHTGACECNICGTKYKNQWCLSRHKAKSHNAKDYKCPKCPEFFQSEYHKQKHLIKVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVICSVCNERFFDNYLLRMHMVKHEGERKFSCEVCGKAFLRRSNLSSHKEMHKKYGHLQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -