Porl030909.1
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- -
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000116.1:972966-995953[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-06 0.0031 19.2 0.0 5 35 44 73 42 78 0.92 2 2 0.024 14 7.5 0.0 7 34 223 249 220 260 0.85
Sequence Information
- Coding Sequence
- ATGGACCACGGAATCCCGCTGAACATACACGCACGACCGCGCATTGTTGGCAGACGACCGAACGCAATCGTTAACATAGAGACTGATGTCTTCCAAGAGAAGTCCTACAAGCAGTATTCCTCACAGCACCTTCGGGAAGCGTTAATAGCAGTGAAAAAGGGTTACAGTGTTTACGCGGCTTCAAACAAGTATGGTGTACCGAGAAAAACTTTGCGGAATTGGATGGAAAAGTATGATATTAAGAGTCAGTTCTCAAAAGGCCGACGCGGTGCAAGAACGAATCAGATCCTTGATCCGTTAGATCTAATGAGGGAGACAAGGTCTGAGAGATACGAGTTCGCGATAGCCAACGTGCAGTGCCAATACGACAGTCCGTCGGACAACGAGCCGGATACGGACCGACCGGCGGCGAGACCTCCGGACGACCACACCTACGACTTGCGCGACGAGCCGCCAGCCTTTATCATCCACCAAGTTAACCACACACCTGGACTACAAGCTTCGGCCCCTTACGTGGAAGTGAGGCCCAAGATAATGACTATAGGGCCGGGGTACACGTCCGGAGTGAACGTCATCCACGTGGGAGATCCACCACAGATGAGCCAGCCTCCACCGGCGGAGTACAACATGAACAAGCGCATCCGGCGTAGCGAGGTGGTGTTACGGCAAGCGGCCGACTGTGTCAGCCGCGGTCTCACCTTTCAGACCGTCTCCGAGAAGTTCAACATACCCATCTCCACTATACGCTTCTTTATGGCGCGGAAAGGCATCCTGCCGCGTCGACGCCGCGGCCGCTGTGCTCAAATGAGTCGCACGAGCAATAGTCCCGAACCGCCATTCCATATGCAGCACTACAAGCTGCCCGAAATGTCACTACGACCCGAGGAGACAGATACCAGCTCCCCCCCAGAACTGAAGCAGCAATAA
- Protein Sequence
- MDHGIPLNIHARPRIVGRRPNAIVNIETDVFQEKSYKQYSSQHLREALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKGRRGARTNQILDPLDLMRETRSERYEFAIANVQCQYDSPSDNEPDTDRPAARPPDDHTYDLRDEPPAFIIHQVNHTPGLQASAPYVEVRPKIMTIGPGYTSGVNVIHVGDPPQMSQPPPAEYNMNKRIRRSEVVLRQAADCVSRGLTFQTVSEKFNIPISTIRFFMARKGILPRRRRGRCAQMSRTSNSPEPPFHMQHYKLPEMSLRPEETDTSSPPELKQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00957894;
- 90% Identity
- iTF_01155065;
- 80% Identity
- -