Porl017051.1
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- -
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000048.1:2286179-2288076[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-09 1.1e-06 30.2 0.0 3 38 10 46 8 50 0.92 2 2 4.2 2.4e+03 0.3 0.3 33 45 191 203 191 203 0.93
Sequence Information
- Coding Sequence
- ATGTCTAAAAAACGACTATACGGCAAAGAAACAATAGATAAGGCTCTAAAATTTATTGAGAATAAAGAAGGTTCAATTCGACAGGCGGCAAAACAATTTGGTGTGCCCAGAAGTAGCctccaatttaaaattaaaaatcctgACACAAAGTTTAAGTCTGGACCAGATCCAGTGCTAACTGAAGCTGAAGAAAACAGTTTATGTGACTTCATCATACAACTATCAAAGCGTGGCTTTCCAAGAAAGAAAGAGGATATCCAATTATGtgagataattaataaaaccgAAGAAAGAGAAGATGAAAAGAAAGAAGTATATAGTGAGCCGACACTtcagaataatttaatagaacGTAGTCCCACTCCGCAGCCTAGTACGTCAAAACAAGTCACATATTCGACGGTTTCCATAATTTCTAATGTATCTCTAACTGATTACTTGAAACAAAACTTACCATTATCACCTAAACGACAAGGAAAGCGCCAAATAGAAAGACTGCCATTTGCTTTGACTTCAGACCAATACGTGGAAAGAATAAAAGCAAAACAGTTAAAAAGATTGAAGAAGAAGCTGCAAAAGAGGAAAGAAAGAGACTACGAGAAGAAAAGAAGAAGGAAAAAGAGAACAGTATACGTAAGAAGAAAATCAAGAAAAAGTGATGGAAAaagcaaaacaaagataattgaagaagatcaaagaaaatactga
- Protein Sequence
- MSKKRLYGKETIDKALKFIENKEGSIRQAAKQFGVPRSSLQFKIKNPDTKFKSGPDPVLTEAEENSLCDFIIQLSKRGFPRKKEDIQLCEIINKTEEREDEKKEVYSEPTLQNNLIERSPTPQPSTSKQVTYSTVSIISNVSLTDYLKQNLPLSPKRQGKRQIERLPFALTSDQYVERIKAKQLKRLKKKLQKRKERDYEKKRRRKKRTVYVRRKSRKSDGKSKTKIIEEDQRKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -