Pmne033238.2
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- RREB1
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000086.1:20068352-20074459[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 26 7.5 1.0 1 23 116 139 116 139 0.96 2 12 9.8 2e+03 1.5 1.1 1 10 181 190 181 202 0.88 3 12 0.022 4.6 9.8 0.1 1 23 330 352 330 352 0.97 4 12 0.0012 0.25 13.8 0.4 1 23 361 383 361 383 0.99 5 12 0.00073 0.15 14.5 2.0 1 23 389 412 389 412 0.97 6 12 0.0029 0.62 12.6 1.6 1 23 765 788 765 788 0.96 7 12 0.00025 0.052 16.0 1.3 2 23 979 1000 978 1000 0.97 8 12 0.025 5.3 9.6 5.3 1 23 1006 1029 1006 1029 0.97 9 12 0.21 45 6.7 1.4 1 23 1062 1086 1062 1086 0.90 10 12 0.47 98 5.6 0.2 1 23 1110 1133 1110 1133 0.86 11 12 0.022 4.7 9.8 0.3 2 23 1173 1194 1172 1194 0.92 12 12 0.028 5.9 9.5 5.3 1 23 1200 1222 1200 1222 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCTACAAATGAATTGCCTGACTCACCCCATTGTGGATATTTCTTGGAATAGTAAAACGAAAACGCCCCACGTTATTCAAACAATCAGGAATTGTAATATTTTATCCtttgttgttgcagaaatcaaaACAGAAGTCATCAGTGAGGCAAAAGTCGAGACGGAGGGACAGCAAGACGAAAAAATGAAGTTGGAAAACGAGCCTCGTGCTGTTCGCACCACTAGCATCGACAGTGATAATAGATCAGATCGCAGTGAAGAAGAAGATTCCAGAAGGGCACGGAAAAGAGCAGCGTCAACGTCCCCATCACCTATTCCATTAGACAAAAGAACAGCTCGCTTTGAGTGTCCAAAATGCCTACATCGGTTTGATTCAGCAAACGCTTTTGACATTCATCGGTTCACAGCGCATGGAGATGAAACTAGAAGTGGTTATGATGATCTTACTATTGTCGATTTCTCAGGCAAAAAATTCCCGGAGATAGCGCGAGGAGTTTGTGAACGCAACACTCATATTTCCATTGCAGAGCAGCGTTATAAATGTGATTTTTGCTCGCGAGAGTTCCCCTGTGGTCAAGCCTTGGATATGCATAGAAAATCCTGTTCTAATTCCGCAAAACTTACCAGTCCAGAAAGAGAGCGTAGGGAAGACTTCTTTGCAAAACTAGATCTAAGGAACAAGTCTTTTGGTATTCCGGGTACTTTGACACCACCTATGGAGAGATTTACACCTAAATTCGATGACGCACATTTAGGTGGAAACGGTATTAGGCATATTGATACCGCTAGGGACTTAGCTGATATCCAGTCAATCTTAAACGTCACGTCAGCTGGTAGTTTACTAGAAAGGCTAACTGGGACTCGGGTCGCTTTAGAAAATTCTGTACTTACACCTCCTGATACAATAGTAAAGGAACGTGAACAAGAAGAAACACAGGACAACTTTGCAGCAGAATTCAGAAGAATGAAGCTGCGTGGTGAATTTCCATGTCGATTATGTCCAGCAAAGTTTCCCAATCTCAGAGCATTAAAAGGACATAACAGAGTACATCTCAGTGGAACTGGGCCCGGTCCTTATCAGTGCAACATGTGCCCTCATGCGTCTTTGGACAAGGCAGCTTTAGTTCGCCATATGCGAACTCATAACGGAGACCGTCCTTATGAATGCGCGGTTTGCAATTATGCGTTTACCACTAAAGCTAACTGTGAGCGTCACTTACGTAATCGCCACGCTAAAGTAACTAGAGAAGATGTCAAACGCTCTATTATTTACCATCCATCAGAAGACCCAAATAATGATGAAGTTAATTCAAAGCTTGCTCGAGAAGAAGTAAAAAGATCGCTCGCGTTTCACGCACCTGAAATTGAACGGCGCAATGAATCTACTGGTCGTGACACTCCATTAACACACTACAGTCCGAGTTTCATCAATGACAGACACCCAGTAACTTCTTTAGTGACTAAAGCATTGCCAGATTCACCCACTCTGACACCAAGGGAATCTGAACAATCTCTACCTAGAATCAAAGTTAAGGGTATTGGACAGTTGACGCAAATACCTGAATTCAGGCAACCAGAGGCTACATTTAAAACTAATGACATTCCACCAGAACCTTACGATGAAGACGCCCCCGTTGATCTCAGTACAAGTGACAATAATAGCTGCGATGTCCTCGATCTCAGTAAGAAAAAACGTGACATAGATGAAGATCAACCTAAATCAATTCCTCAACCAGCGTTTGAGGCAAACTCTGCTACAGCTGCAGCATCAGCAGCAGCCACAGCGTTTGAAAAGACGAGATTTCTTCTAGCCCAACAAAGACTATTTGAGTCGTCTCTTCCAAAACTTGATCCCGCTTATTACGCAACTCAGCTATCTCAACTATACGCTGGTACTGTTCCCGGACTTGCTGGCCTACCTCTTCCGCCATCTGCGTTTCCAATCAATCCTTACTTTCTTCAGACATCGTTTTTTCCTCACCCAACTGATTCACAGGAACTTGCCGAAATAAAACAGCgtatacaaaaagaaataataCGCGGTCTTAGCATGTCAGGAGGGCGATTAGTCAATGGTGACCAGGAAATTCAACCCAAACAAGAACCTGAAGAAGAAGACAACAAATCTCTCCCTCGAACTGCTTCTCCTACTCCACCTCCACGTACTGAATCTCCACGCCCTTTAAGCAATAATATCGTGCCTCAGAACGATTCTGTTAAGATGGTCATTAAGAATGGTATTCTCATGCCAAAGCAAAAACAAAGGCGCTATCGCACCGAAAGGCCATTTTCATGTTCTCAATGTTCAGCCAGGTTTACTTTACGCTCAAACATGGAACGTCATGTAAAACAGCAGCATCCACAGCATTGGAGCGTTCGAAGACCAACACCGAGAGCTGCTCCACCATATCCCACTCCAGATAACTTGGCTGATCGCGTAAAATTTGCCCTCCTTGCTCGACATCTTGAAAGACCGTTACAACAAAATGATCGTTCTCCAATCCGTAGAGATTCAGACGAAGTTGCTGACAATGAGGAAGACGAGGACGATACTTTAGTCATTGATGAAGAACCGGAAACAGACGTGAAGTCTTCAGAGCATACCGCAGCGCACAAGGCTGCTGCGGAAATTTTAATGGCCACACGCCAACAAGAACTTCACAAAGATTTCGATCTTAAAATAGCTGGCAACCTAATCAACAAACCTGTACCCATTACCACCGATAAAACAGAAACTGGAACGGACCCTATTCAAATTTCTGAACCTGTGACTGTCCCAACGCGCAGCGATGAAGAGGAAGACGAGGAAGGCCTTGTCGCATCAACAAGCGAAGGCAATAATTCTGGAAGCGATGAAAATAAATCGGAATCAGACACAACTCAACCGCCCAAGAAAAAATCGGCATACAGCCTGGCCCCAAATCGCGTCTCCTGCCCGTATTGCCATCGGAAATTTCCCTGGTCCTCCTCACTCCGTCGCCACGTTCTAACACACACCGGCCAAAAGCCTTTTAAATGTCCGCACTGTCCACTCCTTTTCACCACAAAATCCAACTGTGaccgtcacctcttacgaaagCATGGCGGCTCCGCAAGGGCTATCTTAGCAGAACCCATTTCAGACACCATCTCTGTACCTCAAAATACAAATGAAATTAGAACGGTCCCAGAAAGACCTTTTAAATGCGCCTCATGTCCCACTAGCACGTTTTCGTCCATGGAAACCCTGAAAAAACATATGTCATCGCGTCATGCGACAAGTGACTCCCAACCCGGGTCTCCAAACCCTGAAGGAAATGAGGAAGCACCGGATGGTCTAGTCTTCAAGTGCCATCTTTGTGAGGGATCTTTTGGGGACAGAAGCAGTGCTCTAGGACATTTGGCAGCTAATCACGCTGCAGAATACGAACAATTAGTCAGCAAAGGGGCGCTAGATGGTACGAGCGACCGAAGCGAAAGCGCAGATGATGACGAAAGGGGAAAATTTCCTGATCATGCCAATAGAAAGGTGGTATGCGCCTTCTGCATCCGTCGCTTCTGGTCTGCGGAGGATCTTCGCCGTCACATGAGGACGCACTCCGGAGAAAGACCTTTCGCCTGCGACCTTTGTCGACGACGTTTCACGTTGAAGCACAGCATGCTACGTCATCGCAAGAAGCATCGCGATGAAATCACCGATGATGAAGAAGCTACACCGCCTAACACGCCGCTAGAACCTGAGAACGTAACAAACGGATACCGCTACCAAGAGGATGACGGATCGGGCAATGAGATACCTTGCAACGTTAACAACAACAACTCTCCACCATCCGCCCCTTACGACAAGAAGCTGAAGCTCGAAATGACATCACGAAAGTACTCATCAGAAGCCGAAAATGACGCTGAAAATGGTGGCGATCTGATCGGTAAACTCCTTGGTATACCGGACAAGACTATCATAAACAAACTTCTTTCCTCCGCGGACGAGGCGGCGAAATTCCTCGGGGTGAACAAATGA
- Protein Sequence
- MCMLQMNCLTHPIVDISWNSKTKTPHVIQTIRNCNILSFVVAEIKTEVISEAKVETEGQQDEKMKLENEPRAVRTTSIDSDNRSDRSEEEDSRRARKRAASTSPSPIPLDKRTARFECPKCLHRFDSANAFDIHRFTAHGDETRSGYDDLTIVDFSGKKFPEIARGVCERNTHISIAEQRYKCDFCSREFPCGQALDMHRKSCSNSAKLTSPERERREDFFAKLDLRNKSFGIPGTLTPPMERFTPKFDDAHLGGNGIRHIDTARDLADIQSILNVTSAGSLLERLTGTRVALENSVLTPPDTIVKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHAPEIERRNESTGRDTPLTHYSPSFINDRHPVTSLVTKALPDSPTLTPRESEQSLPRIKVKGIGQLTQIPEFRQPEATFKTNDIPPEPYDEDAPVDLSTSDNNSCDVLDLSKKKRDIDEDQPKSIPQPAFEANSATAAASAAATAFEKTRFLLAQQRLFESSLPKLDPAYYATQLSQLYAGTVPGLAGLPLPPSAFPINPYFLQTSFFPHPTDSQELAEIKQRIQKEIIRGLSMSGGRLVNGDQEIQPKQEPEEEDNKSLPRTASPTPPPRTESPRPLSNNIVPQNDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPTPRAAPPYPTPDNLADRVKFALLARHLERPLQQNDRSPIRRDSDEVADNEEDEDDTLVIDEEPETDVKSSEHTAAHKAAAEILMATRQQELHKDFDLKIAGNLINKPVPITTDKTETGTDPIQISEPVTVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPISDTISVPQNTNEIRTVPERPFKCASCPTSTFSSMETLKKHMSSRHATSDSQPGSPNPEGNEEAPDGLVFKCHLCEGSFGDRSSALGHLAANHAAEYEQLVSKGALDGTSDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDEITDDEEATPPNTPLEPENVTNGYRYQEDDGSGNEIPCNVNNNNSPPSAPYDKKLKLEMTSRKYSSEAENDAENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00961349;
- 90% Identity
- iTF_01155833;
- 80% Identity
- -