Basic Information

Insect: Parnassius mnemosyne
Gene Symbol: -
Assembly: GCA_963668995.1
Location: CAVLGL010000087.1:4117793-4148357[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.2e-05 0.0046 19.3 3.9 1 23 232 254 232 254 0.99

2 12 8.4 1.8e+03 1.7 0.0 1 23 261 284 261 284 0.84

3 12 2.9 6.1e+02 3.1 3.1 1 23 288 310 288 310 0.92

4 12 0.026 5.4 9.6 1.0 1 23 315 338 315 338 0.94

5 12 0.0069 1.5 11.4 1.4 1 23 342 365 342 365 0.93

6 12 0.04 8.4 9.0 0.1 2 20 378 396 377 398 0.94

7 12 0.011 2.2 10.8 4.1 3 21 411 429 410 431 0.95

8 12 0.028 5.9 9.5 0.4 1 12 540 551 540 557 0.84

9 12 0.22 45 6.7 0.4 1 12 606 617 606 623 0.84

10 12 5.7e-05 0.012 18.0 2.9 1 23 672 694 672 694 0.99

11 12 1.6e-05 0.0034 19.7 3.2 1 23 700 722 700 722 0.94

12 12 6.5e-07 0.00014 24.1 1.7 1 23 728 751 728 751 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.2e-05	0.0046	19.3	3.9	1	23	232	254	232	254	0.99
2	12	8.4	1.8e+03	1.7	0.0	1	23	261	284	261	284	0.84
3	12	2.9	6.1e+02	3.1	3.1	1	23	288	310	288	310	0.92
4	12	0.026	5.4	9.6	1.0	1	23	315	338	315	338	0.94
5	12	0.0069	1.5	11.4	1.4	1	23	342	365	342	365	0.93
6	12	0.04	8.4	9.0	0.1	2	20	378	396	377	398	0.94
7	12	0.011	2.2	10.8	4.1	3	21	411	429	410	431	0.95
8	12	0.028	5.9	9.5	0.4	1	12	540	551	540	557	0.84
9	12	0.22	45	6.7	0.4	1	12	606	617	606	623	0.84
10	12	5.7e-05	0.012	18.0	2.9	1	23	672	694	672	694	0.99
11	12	1.6e-05	0.0034	19.7	3.2	1	23	700	722	700	722	0.94
12	12	6.5e-07	0.00014	24.1	1.7	1	23	728	751	728	751	0.98

Sequence Information

Coding Sequence: ATGGGGGAACTCTTAGCATGTCGGATATGTCTGTCTTCAGACattaagttatataatttttttaaatacagattAGCGGAACCTTTAAGAATTCTTACCGGAATAGAAATATCAGAGTCCGACGGTCTTCCATCCCATATTTGCAGTTACTGTAGTGCTCTGCTGCTCAAGTCCGTAGCATTCAAGGAGAAATGCTGCAACTCTGAGGAACTGCTCAAGTTCTCGTTGATGGAACACAATGTGCTGTCTCTAGACTACCTGGAATCAATCAGAAAAGAGTTACAACTAACACTACCGTTCTGCACCGTGATTACCAGGGAATGTGATGAAGTCCCTGAAGATAATAATGATGACTCTGACCTTATGATAAAAGAAGAAGTAGTCGAGTCAAGCAGCACATTAGTCGAATTTAAAATTGAGAATATAACAGAATCGTCCGCAGAGATAATAAAACCGTATAGAAGAATCAAGAGAGAGAAAGAGAATGAAGAACTTGACGTTAAATTCGAAAATGAAATTGAAACTGTTGACTTTGATAATGAAGAACCAGATCAGCCAGCCCTGCTAGATGACAGTGATGGTCAAGAGGATCTAGAAGGGATGAAGGATATAGAAGTGGTTATATTAACCAAGGAGCAACAAATAGAGGAGGTTCAAGCAAGGAAGACGTCAGCAAACTACATAAATTCCTTTTACAAATGTGAACATTGTTACAAGGGTTTCATGACCGAGTCAACACTTAAAAATCACATGCTCAAGCATGATCcgAAGAGGGGTGAATACGAATGCGACGTGTGCTGGGGTCGCTGGCCGGAACCGCGGTTGCTCCGATGGCACATAGTGTCGTCGCACGAGAGGAAGTACATCTGCAAGCTCTGCGACCACGTCTCCAGGTCGAGCCACCGAGCAAGGGAGCATAGCAAATGGCACACCGGATTTACATTTGACTGCCAGATATGTGGAGCCACCTTTGCGAAATCAACAAGTCACCTGACCCACATCAGGCTGCAGCATCCGTCCAACCACTGCTGTGACGTCTGCGGAGAGTCGTTCATCGGAGAGTACGGACTCAGGATGCACAAGACGCGAGCTCATAAGGACCAAGAGGATGACGGCGCTAAAGTGGTGCTGCAGTGCGGAAACTGTTCAGCGCAGTTCTTCAACTTGGAGGCCTTGAAGCGGCATCAAGAGGAAACTGATGGCAATATATGTCAACCTGATGTCAGcgCCTGTCCACACTGCGGTGAAAGCTGTTCCTCTGACGAACTACTGAAGGAGCATATGAAGTGTCATCAGAAGGAAGAGTCTGTTCACTGTCAGGATAACGTTCGCGAACGAGCGTTCTCACGCGATTCACTATCAACGCGTACACCTGGGCGTAAAGCTAAAGCAGCCGCGCCCGCATACCGCCAGGCAGCTCAAGAAACCTGCAGACATGGTCTGCGAGGTCTGCGGCAAGAAGTGCAACACCAAAGCGACACTGATGTACCACCAGCGGATCCACACTGGCGAGAAGCCGTACCAGTGCACCCACTGCCCCAAGAACTTCAGCGTCTACCAGCGCCTGCAGGTAAGTGCGACAGAGACAGCTATAGAGATAGAGAGAGCGAGAAGCCGTACCAGTGCACCCACTGCCCCAAGAACTTCAGCGTCTACCAGCGCCTGCAGGTAAGTGCGACAGAGACAAGTATACAGATAGAGAGAGAGCGAGAAGCCGTACCAGTGCACCCACTGCCCCAAGAACTTCAGCGTCTACCAGCGCCTGCAGGTAAGTGCGACAGAGACAGGCATATAGATAGAGAGAGCGAGAAGCCGTACCAATGCGCCCACTGCCCCAAGTACTTCAGCGTCTACCAGCGCCTGCAGGTAAGTGCGACAGAGACAGGTATATACATAGAGAGAGAGCGAGAAGCCGTACCAGTGCACCCACTGCTCCAAGAACTTCAGCGTCTACCAGCGCCTGCAGGTAAGTGCGACAGAGACAGCTATAGAGATAGAGAGAGCGAGAAGCCGTACCAGTGCACCCACTGCCCCAAGAACTTCAGCGTCTACCAGCGCCTGCAGATCCACGTTCGAACCCACACCGGGGAGAGCCCGTACCAGTGCCAGCACTGCCCCAAGGCGTTCAAACACAAGGCCGCTCTGAACAGGCACGATCGGgttcACACTGGGGCGAAGCCCTACAGCTGTCCGCATTGCGGCAAGTCCTTCTCGCAGTCCAACTCCATGAAGCTGCACGTGAACACGGTGCACCTCAAGATGCCGGCCCCCTACCGCAGTAAAAAGAACAAGAAATGA
Protein Sequence: MGELLACRICLSSDIKLYNFFKYRLAEPLRILTGIEISESDGLPSHICSYCSALLLKSVAFKEKCCNSEELLKFSLMEHNVLSLDYLESIRKELQLTLPFCTVITRECDEVPEDNNDDSDLMIKEEVVESSSTLVEFKIENITESSAEIIKPYRRIKREKENEELDVKFENEIETVDFDNEEPDQPALLDDSDGQEDLEGMKDIEVVILTKEQQIEEVQARKTSANYINSFYKCEHCYKGFMTESTLKNHMLKHDPKRGEYECDVCWGRWPEPRLLRWHIVSSHERKYICKLCDHVSRSSHRAREHSKWHTGFTFDCQICGATFAKSTSHLTHIRLQHPSNHCCDVCGESFIGEYGLRMHKTRAHKDQEDDGAKVVLQCGNCSAQFFNLEALKRHQEETDGNICQPDVSACPHCGESCSSDELLKEHMKCHQKEESVHCQDNVRERAFSRDSLSTRTPGRKAKAAAPAYRQAAQETCRHGLRGLRQEVQHQSDTDVPPADPHWREAVPVHPLPQELQRLPAPAGKCDRDSYRDRESEKPYQCTHCPKNFSVYQRLQVSATETSIQIEREREAVPVHPLPQELQRLPAPAGKCDRDRHIDRESEKPYQCAHCPKYFSVYQRLQVSATETGIYIEREREAVPVHPLLQELQRLPAPAGKCDRDSYRDRESEKPYQCTHCPKNFSVYQRLQIHVRTHTGESPYQCQHCPKAFKHKAALNRHDRVHTGAKPYSCPHCGKSFSQSNSMKLHVNTVHLKMPAPYRSKKNKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -