Pmne013772.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000046.1:41840379-41846752[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0006 0.13 14.7 1.0 1 23 301 324 301 324 0.92 2 12 0.0019 0.4 13.2 2.9 1 19 341 359 341 363 0.92 3 12 3.4e-05 0.0071 18.7 3.8 2 23 369 390 368 390 0.97 4 12 0.00011 0.024 17.0 0.6 1 23 394 417 394 417 0.94 5 12 2.5 5.3e+02 3.3 2.7 2 21 421 440 420 442 0.93 6 12 0.00028 0.059 15.8 0.2 3 23 528 548 527 548 0.96 7 12 0.24 51 6.5 0.4 2 23 568 590 567 590 0.95 8 12 1.7e-06 0.00035 22.8 4.2 1 23 596 618 596 618 0.98 9 12 0.00054 0.11 14.9 2.5 1 23 623 645 623 645 0.98 10 12 0.0076 1.6 11.3 3.0 2 21 652 671 651 674 0.93 11 12 2.3 4.9e+02 3.4 2.1 1 19 682 700 682 705 0.87 12 12 0.086 18 7.9 3.0 3 23 714 735 713 735 0.88
Sequence Information
- Coding Sequence
- ATGGAGCAAACGTCATTTGCCACGGATAATGAGGTGTTATATCCGGTACTGCTTATACCGAAGAAGTGTACCACGCTAGAAACCACCTGTGCAGCCACTGATGATGTCTTTATAGAACTCAGCATCACATCAGCGGACACTGAAGGTAATGAAATGTGCTTGTACTCAGGTTTTTGTAACGTGAAGCTCATAGATAGTTACGATGTTAATGTACATGAAGTTGATTCTAATTCCACGCCCGAATCCAATGATAATGATCAAATCCAAACAGTAACAGAAGAGAATCCTCCGTACACTCAGTCCCAAGTATGGATAGATCCAATGCGGAGTCCGTATGTGTATAATAGTTGCGACGCGACAGAATCAAAAGAGAAATTCTCAGTATATCGTCATCAAACTCGCTCCAGCCATATAACTGTTGAacaacataatacatacataacacAAAATGTATACAACTATTCGGAGGCTGTTCATTATTCACCGGCTGAAGAATTTGAACATAAAAAGTTTAGAAAAGTGCAAACAAGTGATACAACTCAACAGAATAACTCCGGACCGAACAATCCATATGAAGATGATGAATTTGAATGTGGAGTGTTTCTGTCACAACTGTCTGAAGAGATAATTAATGAAACGGAGACAAGGGCCCGAGAAGAAATCCGTTACGTAGGCTTACAGAGCGACGATGACGCACTAAAACAGCTAATGTCGTCAGATATACAGTCACTGTCCAAGCAGCAGAAAACTATACTGTTCCTAGGTCATGACTCTCACTTCGGACAAACCATTCAGAAGATCACAGTGAACGATCCATCCCTGGAGTGTGTTGGAGGCGGTGAAATTGATCATGAAGTAATTGTTGaaaacaaCAACAACCCTTACCCCAACCAGAAGAAATATCAATGTGACAAATGCAAGCAAATATTTGATCAAATATCTACTTTCAAGCAGCACATGGTGGGAAACCATAGATCGATTAAAGAATCACGCGCCTCTGGTTCTGAAAGTGAAGTTAAATTTATGTGCACAGAATGTGGCAAGAACTTCAAAAGCCAGGAGAAATTTGAGCTGCACTGCCTTGGCCACGGCGATCCAGAATTAGAATGTAATAAGTGCCACAAAGTGTTCGCCTCAAAATTCACTTTACGCACCCACCGTAAAATACACTTACGGAAACACCCGTGCGATTATTGCACGAAGACGTTCACTAAAATGGAAGACTTGATGGCTCACGTCGCCAAAATACATTTAATCTTAAAGTGCCAGGCTTGTGATTACACAGCTAAGAAATACCAAGATCTGCAAGAGCACCAGAAATGTCATTCGAGTCCACTGGATAGTACTTACACGGACTCTTGCGAATCTTTCGACGATGGCATCACAAATACTGACATTGTCACCAAAACGGACACGCCATCCCCAAACGAACAACATCTAAAATCAGATACAATGAACGAAAACTACGTCACACAAGAGAAAATAAGAGAGGCCGATtcggttatagctaaagtgatgTCTAATAAAGTTTTTCTACTTCATGCAAAGAAGGCTAGGAAACACAAAAGATACAGAAAggctTGTAACATCTGCTTAAAGTCCTTCGACCGGATTGGAGATTTGAAGAGGCACCTCATAGAACATGTTATTAGAAGCACTCTAGCCAAGAATCCAGTGAACAAAAACGGCACCCTCAACATCCAATGCGAGGTATGCAGAACGGAAACCTTCTCTAAAGTTGATAGATATAAGGCACATTTACGCGTACACGCTAAATTAACACTGTACCAATGCACGTTCTGCAATAAATCCTTCAGTGATTCCAGTAACTTCTCTAAGCACAAAAAAATTCACGGTACATCGTACTTTCAGTGTGATCTATGCCAAAGGAAATTCAATTCGAAGAAAATGATCACGCAACACATGGAGTACCACAACAACAATTCGCCGATTCCTTGTTTTTATTGCGACAAGGAGTTTCATTTCGAATCAATgctaaataaacatataaaatgcgCGCACACGAAAGAAATGTCGACTAGGTTCCGTTGTAGATTTTGCCACCAATATTTCAAGACGTTAAGGGAAAAGTGGGACCATGAATGGACCATTCATAATGTTAGAAAAATTATTGCCGACTGTCTCCTTTGTGGCTCGAAATTTAGAAAATATTCCGAACTGAAAAGACATTGCAATTCTGTTCACGATATAGAAATTCCACCCGCCAAAAATTTCAAGAATTAA
- Protein Sequence
- MEQTSFATDNEVLYPVLLIPKKCTTLETTCAATDDVFIELSITSADTEGNEMCLYSGFCNVKLIDSYDVNVHEVDSNSTPESNDNDQIQTVTEENPPYTQSQVWIDPMRSPYVYNSCDATESKEKFSVYRHQTRSSHITVEQHNTYITQNVYNYSEAVHYSPAEEFEHKKFRKVQTSDTTQQNNSGPNNPYEDDEFECGVFLSQLSEEIINETETRAREEIRYVGLQSDDDALKQLMSSDIQSLSKQQKTILFLGHDSHFGQTIQKITVNDPSLECVGGGEIDHEVIVENNNNPYPNQKKYQCDKCKQIFDQISTFKQHMVGNHRSIKESRASGSESEVKFMCTECGKNFKSQEKFELHCLGHGDPELECNKCHKVFASKFTLRTHRKIHLRKHPCDYCTKTFTKMEDLMAHVAKIHLILKCQACDYTAKKYQDLQEHQKCHSSPLDSTYTDSCESFDDGITNTDIVTKTDTPSPNEQHLKSDTMNENYVTQEKIREADSVIAKVMSNKVFLLHAKKARKHKRYRKACNICLKSFDRIGDLKRHLIEHVIRSTLAKNPVNKNGTLNIQCEVCRTETFSKVDRYKAHLRVHAKLTLYQCTFCNKSFSDSSNFSKHKKIHGTSYFQCDLCQRKFNSKKMITQHMEYHNNNSPIPCFYCDKEFHFESMLNKHIKCAHTKEMSTRFRCRFCHQYFKTLREKWDHEWTIHNVRKIIADCLLCGSKFRKYSELKRHCNSVHDIEIPPAKNFKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01155759; iTF_01158195;
- 90% Identity
- iTF_01155759; iTF_01158195;
- 80% Identity
- -