Pmne023827.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000082.1:1536772-1537836[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.05 11 8.7 1.0 1 23 34 56 34 56 0.97 2 11 6.5e-05 0.014 17.8 0.4 1 23 64 86 64 86 0.96 3 11 0.16 33 7.1 7.4 1 23 93 115 93 115 0.97 4 11 0.0026 0.54 12.8 1.2 1 23 121 143 121 143 0.98 5 11 7.2e-05 0.015 17.6 1.5 2 23 149 171 148 171 0.96 6 11 6.2 1.3e+03 2.1 0.6 2 15 176 189 175 197 0.66 7 11 2.6e-05 0.0055 19.0 0.4 1 23 203 225 203 225 0.98 8 11 4e-05 0.0084 18.4 0.5 1 23 231 253 231 253 0.99 9 11 0.00023 0.049 16.0 5.1 1 23 259 281 259 281 0.99 10 11 1.3e-05 0.0028 19.9 3.3 1 23 287 310 287 310 0.98 11 11 7.8e-05 0.016 17.5 1.6 1 23 316 340 316 340 0.94
Sequence Information
- Coding Sequence
- ATGAAAATGGATGAACAATCCTCACTCGATAGTGATTACAGTGActcaaataaatatacaaattcgAAGTTGAAGAATGCAAAGAAATCTAACACAATATACAATTGTGAGCATTGCCCGGAACAGTTCCTAACAACACGAGCTTTAGTGTTGCACTCACGATCCCATCTCAAATTGAAAGGCGTAACATTCACATGCGCTCTCTGCCAGGAAACATTCAAAACTAATGACGAGCTGATAGAACACAAATATGTTCATGATTCGGAGGACCTTTGCTTTACATGCAAGAAATGCAAAGTGGCCTTTTCAAACCATTGTGATTATTTATATCATAAATTAAGACATACAACAGCTTCAGTATTCAAATGCGAGGAGTGTTCCTACACATACCAAGTAAGGAGGAGCTTCAAGGGACATATAGCAACACACTATGATAGAAAACTGAAATGTCAGTTATGTGGTGCTACATTTAAACAGGATAAAGATTTGCAAACACACAGACGGAATTTTCATAAAACGGGCATACAGTGTGTGGAGTGTGGGAAAAATAATCAAACTCGGAGAGATCATGAGGAACATATGGTGTCACACACTGGGGTTAAAGTATTTCAGTGCCTGTATTGCGGTGAAGGTTTTTCCAGGAGTGCTTTAAGACGTGCTCATGCAAGAAAACATACTAAATCCAAACCGTATGAATGTGAGGTGTGCTTACAAAAGTTTAGGGTCAAGAACAATCTCTCGCTGCATATGATTACCCATGATACTGAGAAAAGGTATGAGTGCCACGACTGCGGGAAGCAGTACTTTCACAGAGACAGCATTATACAGCACACAAGAAAACATATGAACCATGGACTATATAAATGTCCGAAGTGTGAGCGGTCCTATACTACTTATCGAAACTTGTGCGACCACACTAAAGTTGCTCACATAAAGAAGAGGCCGTTCAAGTGTGATGCTTGTGACGTCACATTTGTCCTTAAAAAATCTCTCCAAAAACACATGAAAACCAGATATCATCGTAACAATGCATATGCTATGACCGTTAATGAAACCAAAGactga
- Protein Sequence
- MKMDEQSSLDSDYSDSNKYTNSKLKNAKKSNTIYNCEHCPEQFLTTRALVLHSRSHLKLKGVTFTCALCQETFKTNDELIEHKYVHDSEDLCFTCKKCKVAFSNHCDYLYHKLRHTTASVFKCEECSYTYQVRRSFKGHIATHYDRKLKCQLCGATFKQDKDLQTHRRNFHKTGIQCVECGKNNQTRRDHEEHMVSHTGVKVFQCLYCGEGFSRSALRRAHARKHTKSKPYECEVCLQKFRVKNNLSLHMITHDTEKRYECHDCGKQYFHRDSIIQHTRKHMNHGLYKCPKCERSYTTYRNLCDHTKVAHIKKRPFKCDACDVTFVLKKSLQKHMKTRYHRNNAYAMTVNETKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01159926;
- 90% Identity
- iTF_01155712;
- 80% Identity
- -