Basic Information

Insect: Parnassius mnemosyne
Gene Symbol: -
Assembly: GCA_963668995.1
Location: CAVLGL010000082.1:6096153-6103417[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0049 1 11.9 0.3 2 23 228 250 227 250 0.94

2 10 0.038 8.1 9.1 1.1 2 23 276 298 275 298 0.93

3 10 0.029 6 9.5 0.9 3 23 323 343 321 343 0.96

4 10 8.2e-05 0.017 17.5 2.0 1 23 347 369 347 369 0.98

5 10 0.03 6.4 9.4 0.9 1 13 374 386 374 387 0.93

6 10 6.2e-05 0.013 17.8 1.8 3 23 407 428 405 428 0.93

7 10 4.7e-07 9.8e-05 24.5 1.5 1 23 435 458 435 458 0.98

8 10 0.0022 0.47 12.9 0.4 1 23 464 486 464 486 0.96

9 10 8.3e-07 0.00018 23.7 1.4 1 23 492 514 492 514 0.99

10 10 0.00011 0.023 17.1 1.9 1 23 520 543 520 543 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0049	1	11.9	0.3	2	23	228	250	227	250	0.94
2	10	0.038	8.1	9.1	1.1	2	23	276	298	275	298	0.93
3	10	0.029	6	9.5	0.9	3	23	323	343	321	343	0.96
4	10	8.2e-05	0.017	17.5	2.0	1	23	347	369	347	369	0.98
5	10	0.03	6.4	9.4	0.9	1	13	374	386	374	387	0.93
6	10	6.2e-05	0.013	17.8	1.8	3	23	407	428	405	428	0.93
7	10	4.7e-07	9.8e-05	24.5	1.5	1	23	435	458	435	458	0.98
8	10	0.0022	0.47	12.9	0.4	1	23	464	486	464	486	0.96
9	10	8.3e-07	0.00018	23.7	1.4	1	23	492	514	492	514	0.99
10	10	0.00011	0.023	17.1	1.9	1	23	520	543	520	543	0.97

Sequence Information

Coding Sequence: ATGAATATGAACAGTCTGTGTCGTTGCTGTCTAGCTCGCCCACCTGATAAGGACCTAAAGACTGTTTACACGCGTCTTGGAAAGGCAGAAATATATGGAGATATGTTAAAAGAATGCTTCGAGATACACTTATCGCTGGGTAACATGGACGCGGGTATATGTGACATGTGTGTCACTAGGCTTCGAGACGCCACGGACTTCAAAGAGCAAGTAATGCGTTGCCAGAAAGAGTTCCAGCTTCATTATATTTCAACATTCGATGAGAAAGATGAAAAGTCACCGAAAGTGAAACTTGAGGCTTCTGATGCTGAGGACGATAATGGAGTTTATTTTATTGAAGTTAAAGACGAACCCTCAGATGAAGACTTGAAGATGGAGGAAGATTCGGAACTGGCCGCCATGTTAGGTCTGGGCGATATCACAATCAAGAGGAGGGTGAGCAAGAAGAACGGAGAGAAGTTGCTTCTAGAAACCAACAATGATTGTAAAAACTCACAAAAGAAGGGCCCAATCAAACTTTCGCTTAGAACGATAACACAAATGGAAAAACTGAAGAAATCCGTTCAAAACCCGACCCTAATCCGTTTTGTTAGCGAGAACAACAAACACAAAGTCAACCtggaaaatatattgaaatattcaaacTGTACACCTTTCTTTACGAGAACAATCGCCGGTATTGTATGCGCGTACTGCAAGCAGACTTACCAGGACCCGCAAGATTTAAGAACGCACAATCGAGAAAATCACAAATACGATGAGTTTAACCACAGCAAACGTATAGACAAGAATAACCTTTCAATCAAATTGGACATAACTGATCTAAAATGTACACTTTGCAACGCAAACCTTGATCATATATCGAATTTGAAGCAACATCTCACTAatgaacataatataaaattctaTTCAGACATAAAGGACTACATAATGGAATTCAAGTTGACTTCGTCCCAAATAATGAACTGTACGCTCTGCAACTCGACGTACGAAACCTTCAAGATGTTACTGCAACATATGAATGGGCACTATAGGAATTTTATCTGCGACGTGTGCGATATGGGTTTTGTAAACCAGCACAGGTTAAAAAGTCACAAACGGACCCACGAAGTTGGCACTTTTAAATGCGCGTACTGCGACAAAATCTTCACCACTCGAGTGAGAAAGATGTGCCACGAGAAATACACACACAATTCAAACGCTCGATATACAACTAATTGCCCTCAGTGTGACAAGTCTTTCACGAGTTACTACCAACGTAATAGGCATATGTTTAATGACCATAACACCGCAGCAGCGGATTACAAGTGTAATATATGCGACAAAACTTTCATTCTCAAATCGAAATTGACATCCCATATAAAGAAAGTGCATTTAATGGAACGCAATCATATTTGTGCAGTGTGTGGACAAggcttttttataaaacaaagtttAAACGAACATATGATTAAGCATAACGGGGAAAGAGTGTTTAAGTGTACAGTATGTTCTAAGGCTTATGCTAGGAAAAAAACTCTTCGGGAACATATGAGAATTCACAATAATGATAGACGATTCAAATGCGGTGTCTGCAGTTTGGCATTCGTTCAAAAGTGCAGTTTGAAAAGTCATATGTTATCCAATCACGGTGTTACTTTGACAGAATTCGAAAACAACCGAACTGAAAAAAGTCCATAG
Protein Sequence: MNMNSLCRCCLARPPDKDLKTVYTRLGKAEIYGDMLKECFEIHLSLGNMDAGICDMCVTRLRDATDFKEQVMRCQKEFQLHYISTFDEKDEKSPKVKLEASDAEDDNGVYFIEVKDEPSDEDLKMEEDSELAAMLGLGDITIKRRVSKKNGEKLLLETNNDCKNSQKKGPIKLSLRTITQMEKLKKSVQNPTLIRFVSENNKHKVNLENILKYSNCTPFFTRTIAGIVCAYCKQTYQDPQDLRTHNRENHKYDEFNHSKRIDKNNLSIKLDITDLKCTLCNANLDHISNLKQHLTNEHNIKFYSDIKDYIMEFKLTSSQIMNCTLCNSTYETFKMLLQHMNGHYRNFICDVCDMGFVNQHRLKSHKRTHEVGTFKCAYCDKIFTTRVRKMCHEKYTHNSNARYTTNCPQCDKSFTSYYQRNRHMFNDHNTAAADYKCNICDKTFILKSKLTSHIKKVHLMERNHICAVCGQGFFIKQSLNEHMIKHNGERVFKCTVCSKAYARKKTLREHMRIHNNDRRFKCGVCSLAFVQKCSLKSHMLSNHGVTLTEFENNRTEKSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00923074;
90% Identity: iTF_01154445;
80% Identity: -