Pmne037013.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000087.1:32123132-32154367[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.1e-05 0.013 17.9 3.8 1 23 18 40 18 40 0.98 2 12 3.9e-05 0.0082 18.5 0.8 1 23 47 70 47 70 0.92 3 12 3.5e-05 0.0074 18.6 0.1 2 23 79 101 78 101 0.95 4 12 0.00042 0.088 15.2 1.3 2 23 108 129 105 129 0.94 5 12 8.1e-06 0.0017 20.6 1.3 1 23 135 159 135 159 0.99 6 12 0.00026 0.055 15.9 1.1 1 23 165 187 165 187 0.95 7 12 0.00028 0.058 15.8 1.0 3 23 196 217 195 217 0.97 8 12 0.0088 1.9 11.1 0.2 1 23 222 245 222 245 0.96 9 12 0.0043 0.9 12.0 1.2 2 20 252 270 251 272 0.95 10 12 0.93 1.9e+02 4.7 4.1 1 23 538 560 538 560 0.90 11 12 0.099 21 7.8 0.6 2 23 571 591 570 591 0.91 12 12 0.14 30 7.3 4.1 1 23 720 742 720 742 0.96
Sequence Information
- Coding Sequence
- ATGAGAGAAAGTTTTCTGCGTCCGTACGTTTCGTATgtacACCTAAAGCCCTTCCGATGCTCCATGTGCGACTACGCCTGTCGGGACAGCTCCACGCTCAGGAAACACCAGGATAGGCACCTGGGGAAGTTTAAAGCGTACCCATGCAAGATTTGCGATAAAGTGTTCAAAGTCAAGAGCCGCCTAAAGGAGCACACGGACGAGAAACACTACGGAGTGAACGTTCACAACATCCCGTGCGAGATCTGCGGTAAAATGTTCAAATCCAAGGGCGTCCTCAGCACTCATCTCAACGTGGTGCACGCGCGCCGCTACATGTGCAAGTGCGAGATCTGCGGCGCCGTCAAGTACAGCAAGTCCAACCTGGAGATGCACATGCGCTCGCACCTCGACATCCGCCCCTACAAGTGCACGTTCCAGCAGTGCGGGAAGAAGTTCAAAGTGCTGGGTGATTTAAAGAAGCACATCATCACGCACTACCCCGAGCGCCAGCACGCGTGCCCCACGTGCGGCCGCCTGTTCGCGCGCAAGGCGCGGCTGCAGCGCCATCTCACTCAGCACCAGCCCAAGGTCAAGTCCGTGGCATGCGCTCTCTGTGGCGTGTGCTTCTACAACGAAAACTATCTGACGGTGCACATGCGTAAAAAACACAGCGACATTCGCTACGAATGCGACGAATGCGGCTTCAAAACTCGGAACAAGCCGAGCATCGTCATGCACATCAAGTACGGACACGCGTCTGACACTGACACGCAGTGCCAGATCTGCCAGAAGGTCTTCAAGAAGCACATGTACCTCAAGTTACATTACTGGAACACACACTGCATCAAATACAAGATATCGCACCGGATAAAGAGAAAAAAAGAGATTACAGAAGAGATCAAAATAAAAGAGGAAGTGCATAGTGTGCCTGAAATAGATCTACTGGAAGTCCACAAGGAAGAGGTTTTCTCagATATGGAGGAGGAACATTACAACGGTCCAGAAGAAACCGAGTACAACGGTACAGAGGTAACTGAGTACTCCAAAAGCGTGCTAAGCGAGGACGTTACACGTGTTCTCGACGAGGGAAAGGGCGAGGAGGTCGAGAAACATCCGGAGCAAGTTTTCGACGAGTTCATGTTACAGAAGATCACGAAGGACACTAAAGATGAAGGCAAAAATCAAGTCGAAGTGGAAATAGACGTAGAATCGCAGGAGAAGGCGAAGCGATACTTAGAGAAGCTTGTTATTAAATCTAGAAGGAAAAGGGAGATCGAGGAGTTGGAGGAAACGAGACAGCAGTACAATCAAAGGATGAGGGAGGTTATGAATAGAAAGCCCAAAACTGAACGCATtacaataaaatttgtaaataacaGAAAATATGATGATGTCGCAAATAATGAAGTGGAGCAATCTAGTAACAATGACGTCAATGATTCACAAATTACAAATGACAATGTTACTATTAATAATAGTGATAATAACGAATTATTAGCCAACGATAGTGAGTTAACTgagaataataataaagaaacagACGATAGTCATACAGAAGCAaacaataatgataatgaaataaaTGAGTCGGACGAAAGGAGACCGAATAAGAAGTTAATAATCAATACACATCAATGCTACGTTTGTTTTAAGCTGTTCGAAACAAAACCACAACTAATCGAACACTGCAAAGAACATTTTGATGTATGCAACACTGTCATGTTAAAGAAATGTCCACTTTGTGACTATGTTACAAAACTCAATCTCAGCAGGCACATGAGATTAGTTCATAAAGTGACAATCAAAGTACCGTACGCCAGGTTGAaggataagaaaaataatataaacggTTCAAGATATTATTACGATATAGAAGACAGCGTTGTCAATCAAGTCGAAGTTATTCCCAGTGTTAAAAATTTGAACAAACGCGAATATGTAAAGATTGACAAGAAGAGCCGAGAAGAGAAGGACAGAAGCGTTGCGAAGACGAAACTAGTGAAGAAGGGCGGGGAGTGGGTAGTAGAGAAAGAGAAGATTGCTGTTAAAGATGACTTCATACTGCCTGAAATTGACCCGAAAGAAGTTATGAAGATTAAAGAGAAAGGGGATGATTATTTGGGGAGAATGAAGAAGCTGAGTCGGCTAGCGAAAAAGAACGGAACGAAAATGATGTTTCCGTGCGAAAATTGTGAAAAAATCTGCCAGACTTTAAGCGCGTTGAAGCTACATTGCCGAAAACACAATCCAAATGCGAAACCCTTCAAGCCGAAGGTCTGGAAACATAAAATGAAAGGCAATGAACCGGTTCCAAAAATCGAAACACCAGTTAACACAGAAAACCGGTACGCGAATCCCAAACCTATAACGAACAAACATAAGTGCGAACCAGAGTTGAGAGATTTCTACGAGAAAAACATCAAAGGCGGCGACATTGAGTTTTGGCAGTTTCTCAaaatatacaacaaaatgtcCAGAGAGAATATAACTGACTTTTCGGATTTAAACAAGCGCATTGATTTCGGTATACATTACGATGAAACTCCTAAAGAAGAAGAATCTATTGAAACAAAAGTGACTAAAAAGAGAAAAGTTAAAAAAACTCAAAAACCTAATTTCATGAGAGTAATAAAAATCAgcaaaaaggaatatttaaaaagaaatgaaCTTAAAGCTAAGTTAAGAGAAACGCTATCGAAACACACTAACTCATAA
- Protein Sequence
- MRESFLRPYVSYVHLKPFRCSMCDYACRDSSTLRKHQDRHLGKFKAYPCKICDKVFKVKSRLKEHTDEKHYGVNVHNIPCEICGKMFKSKGVLSTHLNVVHARRYMCKCEICGAVKYSKSNLEMHMRSHLDIRPYKCTFQQCGKKFKVLGDLKKHIITHYPERQHACPTCGRLFARKARLQRHLTQHQPKVKSVACALCGVCFYNENYLTVHMRKKHSDIRYECDECGFKTRNKPSIVMHIKYGHASDTDTQCQICQKVFKKHMYLKLHYWNTHCIKYKISHRIKRKKEITEEIKIKEEVHSVPEIDLLEVHKEEVFSDMEEEHYNGPEETEYNGTEVTEYSKSVLSEDVTRVLDEGKGEEVEKHPEQVFDEFMLQKITKDTKDEGKNQVEVEIDVESQEKAKRYLEKLVIKSRRKREIEELEETRQQYNQRMREVMNRKPKTERITIKFVNNRKYDDVANNEVEQSSNNDVNDSQITNDNVTINNSDNNELLANDSELTENNNKETDDSHTEANNNDNEINESDERRPNKKLIINTHQCYVCFKLFETKPQLIEHCKEHFDVCNTVMLKKCPLCDYVTKLNLSRHMRLVHKVTIKVPYARLKDKKNNINGSRYYYDIEDSVVNQVEVIPSVKNLNKREYVKIDKKSREEKDRSVAKTKLVKKGGEWVVEKEKIAVKDDFILPEIDPKEVMKIKEKGDDYLGRMKKLSRLAKKNGTKMMFPCENCEKICQTLSALKLHCRKHNPNAKPFKPKVWKHKMKGNEPVPKIETPVNTENRYANPKPITNKHKCEPELRDFYEKNIKGGDIEFWQFLKIYNKMSRENITDFSDLNKRIDFGIHYDETPKEEESIETKVTKKRKVKKTQKPNFMRVIKISKKEYLKRNELKAKLRETLSKHTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01155826; iTF_01158164; iTF_01154459;
- 90% Identity
- iTF_01155826; iTF_01158164;
- 80% Identity
- -