Pmne061938.2
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000148.1:9238781-9263128[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.02 4.1 10.0 0.1 2 23 12 33 12 33 0.95 2 25 0.00037 0.078 15.4 1.1 1 21 38 58 38 62 0.92 3 25 0.00092 0.19 14.2 1.0 2 23 186 208 185 208 0.94 4 25 0.0093 2 11.0 0.1 1 23 214 236 214 236 0.96 5 25 0.012 2.6 10.6 0.1 1 23 247 270 247 270 0.92 6 25 3.4e-05 0.0072 18.6 4.3 1 23 275 297 275 297 0.98 7 25 3.3e-05 0.007 18.7 1.4 1 23 303 325 303 325 0.97 8 25 0.00011 0.024 17.0 4.9 1 23 331 353 331 353 0.98 9 25 1.7e-07 3.7e-05 25.9 0.9 1 23 359 381 359 381 0.98 10 25 0.0021 0.44 13.0 2.6 1 23 387 409 387 409 0.98 11 25 4.2 8.7e+02 2.6 0.2 1 11 415 425 415 429 0.86 12 25 0.03 6.3 9.4 1.6 1 23 431 456 431 456 0.94 13 25 4.2 8.7e+02 2.6 0.2 1 11 462 472 462 476 0.86 14 25 0.03 6.3 9.4 1.6 1 23 478 503 478 503 0.94 15 25 4.2 8.7e+02 2.6 0.2 1 11 509 519 509 523 0.86 16 25 0.03 6.3 9.4 1.6 1 23 525 550 525 550 0.94 17 25 4.2 8.7e+02 2.6 0.2 1 11 556 566 556 570 0.86 18 25 0.03 6.3 9.4 1.6 1 23 572 597 572 597 0.94 19 25 4.2 8.7e+02 2.6 0.2 1 11 603 613 603 617 0.86 20 25 0.03 6.3 9.4 1.6 1 23 619 644 619 644 0.94 21 25 4.2 8.7e+02 2.6 0.2 1 11 650 660 650 664 0.86 22 25 0.03 6.3 9.4 1.6 1 23 666 691 666 691 0.94 23 25 4.2 8.7e+02 2.6 0.2 1 11 697 707 697 711 0.86 24 25 0.03 6.3 9.4 1.6 1 23 713 738 713 738 0.94 25 25 0.0086 1.8 11.1 0.0 1 21 744 764 744 765 0.94
Sequence Information
- Coding Sequence
- ATGCGGCTAGGACGTACGCGTCAAACGCGCGAACAATGTATGATTTGCGGCATGGTATTTTCGAGTGTGGGACGTTATATGTCGCACATTGCTCAACATGGTCCTGTGCTGTATCAGTGCACCCAATGTGGCGAAACTTTCTCCACCAGGCTATTATTTAATGACCATCAAACAGAGACTAACCACACAGGGCAGAACATACTGCAATGTAAGGATGTAACACCTAGTAACCAAGAAAGTTCAaaatctgCAGAAAAATCTGAAGAATCAGCATCAGAAAAAAGCACTGAAAAATCGCCGGAATCAAATGATTTAGCTTCTGTAGACAACCTAGTGAGTAATATACAAGCAACTTCATTGCCTGAAGCGCTGCCCGAAGCCTTACCTGATTTAAGTGTTCAGCCCCCAGAAGTGAAAAATGAAGATGCAAAGGAAGAAACGAAAACTGAGAGGGTAGATGTTAAAACTGATGAAAATAATGTGGTGGTTGAAGGAAATAATGAGACAACCAATCCATTAGATAGTGAACCTGAAGTGCAAGacggtaataaaataaaatgcaatcaATGTGACAAGACATTTAACAACAGACAAAGCAAATCAATTCATATCAAGGCAGTTCATCAAGGTGAGCGACCATACAAATGCATGGAATGCGGCGCAGCATTTGGTTATCCACGTTCACTCTCTCTGCATTCAGCCTCACACCGGCGACATAAGACTTCGTCATCCAAAGGATACGCATGTGACCTATGTGGAAAGGTACTGAACCACCCGTCGTCGGTGGTGTACCACAAGCAAGCGGCGCACGCCATGCAGCGCTACgtgtgcggcacgtgcggcaagCGCTTCCACCACAAGCAGCTGCTGCAGCGCCACCAGCTCGTGCACTCGCAGCTGCGCCCCTTCACCTGCAAGTCATGCAACGCAACATTCAAGACGAAGGCAAATTTGCTCAACCATCAGCTACTCCATAGCGGCGTAAAGAAGTTCAGCTGCGAGATTTGCAAACATAAGTTTGCACACAAAACTAGTCTTACTCTACATATGAGATGGCATACAGGCGTGAAACCGTACTCGTGCAAGCAGTGCGGTAAGAGCTTCAGCCAGAAGGGCAACCTGTCTGAGCACGAGCGGATCCACACGGGCGAGAAGCCGTACCAGTGCGCGTGGTGCCCGCGCCGCTTCACCACGTCGTCGCAGCACCGCCTGCACGCACGCCGCCACGCGCCCGACCGGCCCTACGCGTGCACGCTCTGCCCCAAGAGGTACCCGCCGCGTACCAGCGCGTTCCAGTGCGTACCGGTGCGCGTGTGCCCGCGCCGCTTCACCACGTCGTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCCCGACCGGCCCTACGCGTGCACGCTCTGCCCCAAGAGGTACCCGCCGCGTACCAGCGCGTTCCAGTGCGTACCGGTGCGCGTGTGCCCGCGCCGCTTCACCACGTCGTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCCCGACCGGCCCTACGCGTGCACGCTCTGCCCCAAGAGGTACCCGCCGCGTACCAGCGCGTTCCAGTGCGTACCGGTGCGCGTGTGCCCGCGCCGCTTCACCACGTCGTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCCCGACCGGCCCTACGCGTGCACGCTCTGCCCCAAGAGGTACCCGCCGCGTACCAGCGCGTTCCAGTGCGTACCGGTGCGCGTGTGCCCGCGCCGCTTCACCACGTCGTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCCCGACCGGCCCTACGCGTGCACGCTCTGCCCCAAGAGGTACCCGCCGCGTACCAGCGCGTTCCAGTGCGTACCGGTGCGCGTGTGCCCGCGCCGCTTCACCACGTCGTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCCCGACCGGCCCTACGCGTGCACGCTCTGCCCCAAGAGGTACCCGCCGCGTACCAGCGCGTTCCAGTGCGTACCGGTGCGCGTGTGCCCGCGCCGCTTCACCACGTCGTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCCCGACCGGCCCTACGCGTGCACGCTCTGCCCCAAGAGGTACCCGCCGCGTACCAGCGCGTTCCAGTGCGTACCGGTGCGCGTGTGCCCGCGCCGCTTCACCACGTCGTCGCAGCACCGCCTGCACGCGCGCCGCCACGCGCCCGACCGGCCCTACGCGTGCACGCTCTGCCCCAAGAGGTTCGGCACGCGCGGGGCGTGGGCGGCGCACGCGCGGCGCGAGGGCAACCCGGCCGCGCGGCCGCGCGTCGTGCGCGCGCACCGCCCACACAAGCCATTAAAGCAAGTAAGCCTCCTGGTTCCTGACAGCCAGCAAGGTCCGACAGAGGTCGTTAGCGTTCCAACAGAAGTGGTGAGTGAGTCGCAGCCTGACACGGAGGAGAGAGTCATATATATCACCTACGATGTCGAGGATGCACCGCCCTCACTGCACATACTGGGACACGAACAGACTGTGACTCTTGACGATACGAAAATGCTGTCGTCATGCGAGATGTACTCGGGACTCGAGCAGCTGCAGCTGCAGCAGCCCATTAAGCAGGACCAGCAGCACCAGCTCCGCTTGGGTAACGCTTCACAGGAACATTTGCCAGTGACGGACGAACACGGCAATCCACTGCACTTCACCATGCAAGATGGCACTCGGCTTGCCATTACGTCTGCAGACGGAAAATCTTTGCAGGTAATCACGCAAGATGGTCAGACAATACCTGTAGAAATCAACAGTTTTACAGATGAAGAGGACATAGACAGTTCGGACACCGTAGTTCACCAATTGAACTTGCAAAGGAGCGTGGACAGCAATGGTTCTTCACCGGTTACTCATTACTACACGCTGGTTTGA
- Protein Sequence
- MRLGRTRQTREQCMICGMVFSSVGRYMSHIAQHGPVLYQCTQCGETFSTRLLFNDHQTETNHTGQNILQCKDVTPSNQESSKSAEKSEESASEKSTEKSPESNDLASVDNLVSNIQATSLPEALPEALPDLSVQPPEVKNEDAKEETKTERVDVKTDENNVVVEGNNETTNPLDSEPEVQDGNKIKCNQCDKTFNNRQSKSIHIKAVHQGERPYKCMECGAAFGYPRSLSLHSASHRRHKTSSSKGYACDLCGKVLNHPSSVVYHKQAAHAMQRYVCGTCGKRFHHKQLLQRHQLVHSQLRPFTCKSCNATFKTKANLLNHQLLHSGVKKFSCEICKHKFAHKTSLTLHMRWHTGVKPYSCKQCGKSFSQKGNLSEHERIHTGEKPYQCAWCPRRFTTSSQHRLHARRHAPDRPYACTLCPKRYPPRTSAFQCVPVRVCPRRFTTSSQHRLHARRHAPDRPYACTLCPKRYPPRTSAFQCVPVRVCPRRFTTSSQHRLHARRHAPDRPYACTLCPKRYPPRTSAFQCVPVRVCPRRFTTSSQHRLHARRHAPDRPYACTLCPKRYPPRTSAFQCVPVRVCPRRFTTSSQHRLHARRHAPDRPYACTLCPKRYPPRTSAFQCVPVRVCPRRFTTSSQHRLHARRHAPDRPYACTLCPKRYPPRTSAFQCVPVRVCPRRFTTSSQHRLHARRHAPDRPYACTLCPKRYPPRTSAFQCVPVRVCPRRFTTSSQHRLHARRHAPDRPYACTLCPKRFGTRGAWAAHARREGNPAARPRVVRAHRPHKPLKQVSLLVPDSQQGPTEVVSVPTEVVSESQPDTEERVIYITYDVEDAPPSLHILGHEQTVTLDDTKMLSSCEMYSGLEQLQLQQPIKQDQQHQLRLGNASQEHLPVTDEHGNPLHFTMQDGTRLAITSADGKSLQVITQDGQTIPVEINSFTDEEDIDSSDTVVHQLNLQRSVDSNGSSPVTHYYTLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -