Pmne024043.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000082.1:6164087-6174642[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 1.9 4e+02 3.7 0.6 1 21 91 111 91 114 0.89 2 30 0.55 1.2e+02 5.4 0.7 2 23 141 163 140 163 0.94 3 30 0.00017 0.037 16.4 2.0 2 23 186 207 185 207 0.96 4 30 0.25 52 6.5 2.1 1 23 211 233 211 233 0.97 5 30 0.0024 0.5 12.9 1.4 1 23 238 261 238 261 0.92 6 30 0.0007 0.15 14.5 1.9 2 23 269 291 268 291 0.94 7 30 0.00048 0.1 15.0 1.7 2 23 299 321 298 321 0.96 8 30 0.042 8.7 8.9 3.9 1 22 327 348 327 349 0.89 9 30 8.6e-05 0.018 17.4 1.0 1 23 355 377 355 377 0.98 10 30 0.00013 0.028 16.8 1.1 1 23 383 406 383 406 0.96 11 30 2.1 4.5e+02 3.6 1.1 1 23 491 514 491 514 0.89 12 30 0.069 14 8.3 0.2 2 23 541 563 540 563 0.95 13 30 2.8 5.8e+02 3.2 5.8 2 23 586 607 585 607 0.96 14 30 0.18 37 7.0 0.9 1 19 611 629 611 633 0.87 15 30 0.02 4.2 9.9 0.7 1 23 638 661 638 661 0.95 16 30 0.0099 2.1 10.9 1.6 1 23 667 690 667 690 0.95 17 30 0.006 1.3 11.6 0.8 2 23 698 720 697 720 0.96 18 30 0.0012 0.26 13.7 2.1 1 23 726 748 726 748 0.97 19 30 0.00028 0.059 15.8 0.6 1 23 754 777 754 777 0.97 20 30 4.3 9e+02 2.6 0.8 1 7 783 789 783 791 0.91 21 30 0.0013 0.28 13.6 0.3 3 23 854 875 852 875 0.91 22 30 0.15 32 7.1 2.5 2 23 901 923 899 923 0.92 23 30 0.00079 0.17 14.4 0.2 2 23 946 967 945 967 0.97 24 30 0.00078 0.16 14.4 0.1 1 23 971 993 971 993 0.98 25 30 0.038 8 9.1 7.0 1 23 998 1021 998 1021 0.94 26 30 8.8 1.8e+03 1.6 1.5 2 23 1029 1051 1028 1051 0.78 27 30 0.0014 0.3 13.5 1.8 2 23 1059 1081 1058 1081 0.96 28 30 0.0025 0.53 12.8 5.8 1 23 1087 1109 1087 1109 0.96 29 30 7.3e-06 0.0015 20.8 2.4 1 23 1115 1137 1115 1137 0.98 30 30 0.00047 0.099 15.1 3.5 1 23 1143 1166 1143 1166 0.97
Sequence Information
- Coding Sequence
- ATGGTGGTGGTCTCTCAGCGCCAATCAAGCAGACTCACAAGACTGACCAGGGTTCTGACGGCTAAGGGTAATTCAAGATCTATATTAGTAACAGAAGAAAGTTTAGAAAGTGATAGTACTTTaattgaaacaaaaaataataaagtaaaacaaGCTGTAAAAGAACCGATTGCTAAAAAGTGGAAAGAAATTGAAAAGCATCGAGCTAATGTACACCACATTTTAAGTAATTCTAACGCTACGCCGATCAGGTGTCGAGGTAGCGTTGGGTACGCTTGTTGCTTCTGCACCGGTCAATATCCTAATCCAGCGGATCTAAAACAGCACAGTATAGATAACCACGAGAATATCAATGAAACGAAATACATGAAACGCAAGGACATGCACAAGTTCAACATTCAAATGGACATCACAGGCTTATGTTGTAAACTGTGCGATAGAAACATTGATACAATTGAACTGCTAATGGAACATTTAAAAAATGTGCACAAGAAAAAAGTGTTCACTGATATTAAGGCTCAACTCATACCGTTTAAATTTGAAAGTGATATCCTTAAGTGCTATATTTGCGGCAAAATCTTCCCGAAATTCCAAACTCTTCGACATCATATGAATGAACATTACAGTAACTATAAATGCAATGAGTGCGAAGCGGGCTTCGTGTGTCAGTCTATGCTTCATGAGCATTCTCAGATCCACAAGTTGGGCACGTTCAAATGCGACATCTGTCCGAAAGTTTTCAGTACGTTCCGAAAGAAAAGAAGCCACGAGAAGGGCGTTCATTCGCAAgtagaaatgaaaaataaatgtcCGTACTGCGACGAAAAATTTAAGCACTACCGACAAAAGGAGAGGCATATGGCCGAAGCTCACGAGAAGGCCTTTCCCCGCCTGAAATGCAAAGCCTGCGAGAAGTCGTTTTTCACCCAAAGCAGTTTAAGCATACACGTGAAAAGATTTCACTTGGTTCACAGGCCCCACAAATGTCCGCACTGTGATAAACATTTCTTTTCTATGGCCGAGGTCCGGCTACACTTGCCGACACATACCGGTGTTCGTACATTCGAATGCGATATCTGCCATAAAGCATACGGCTTGAGGAAGACACTTAATGAACACATGCGTATACATATGAACGATAAGCGACATAAATGTGAGTTGTGTGGACAGGGGTTTATACAAAAGAACACGTGGCGGGTACACATGCGTGCTAAGCACGGTTTACCGCGTACCAAAATCGCTAAGCTCAAAGGTATGACCGAACCTGAAACGAAATACGCAAACAAGAAGAGCGCGTGCAAAAAAACTTGTAGAAGACAGAAATCATTAGACGCTAAGAGAAATTCTAAAATGGAATCTGATGAACCCCGAACAAAACACGGCGAAGAATTAGAAAAACATCGTACGAACGTGAGAGAGATATTGTTATGGTCTAATGCTACTCCCATCAGGTGTAGAGGTGGCATTGGTTACGCTTGCTGCTTCTGTACAGATCAATATCCAAACCCAAATGATTTAAAAAGACATTCTTTAGAGGAACACGATAGTGTTGTTATATCCACGTTCATGAAAGGGAGAGATATGCACGGATACTTCGTAAAGTTAGACATAACAGCACTCACTTGCAAAATTTGTAATTCATCCATCGACACACTGGAACAGTTGATGGAACATCTAAAGAACGTGCATAATAAAAATGTTGATCTGAGTATAAAGAATCACATGATACCGTTCAAGTTTGAGACGGAGAATCTTCGTTGCTGCATTTGCCTGAACGTTTTCCATAAATTCCATGCACTGCAGGTCCACATGAACAACCATTGCAGAAATTACATCTGCGATATCTGCGACGCGGGGTTTGTTAATAGACACATGCTGCGATGCCACAGTGACGGGCACAAGGTCGGAACTTTCGCTTGCGAACAGTGCTCCAAAGTGTTTAAAACAATTCGCATGAAGAAACTGCACGAACGGATCGTTCATAATTCAAATAGGCCGCACAAATGTGGCTACTGTAACGAACGATTCAAAGAGAACTGGAATAAGAATGAACACCTGGCCAGAGTGCACGGGGTACGCGACCCAGGAGTGAAATGCCAAGCGTGCGATAAAACATTTGACACTCAGCAGAGATGGTTGCTTCACATGAAAAGGGACCACTTAATGCAAAGGCAACACCAGTGCAATCGATGTGAGAAAGCGTTTTACGCGAAACGTGAACTGACGGATCATATGGTGAAGCACACGGGCTTGAGAGAGTTTAGCTGCGAAGTCTGTGCCAAAACGTATGGACGACTAAAAACATTGAAGGAACACATACGAAGGTTGCATCCAGACGACGAGAGATTCAAGTGCCCCCATTGTGGTGTGGGAAGAGTGATCAAAATAGAAACAAGACTTACAAAACCGCTGGAATTGAAGTTTATATCAAAAAGTAAGACGACAGTAAGAAATAACAGTGACCTCTCTGAGGCGAAGAAGAACCAACACAATTTGAGCATCATCCTGCTGAATTCGAACGCGAATCCGATCCGATGCAAAGACAGCTTTGGATATGGCTGCGCTTTCTGTCCGAAGCAATTCCCACAGCCGACTAATTTAAAGAAACACTTCTTAGAAGAGCACAACAGTGATAGACTCATCAAATATATGTCGAGTAAGCTTTTTGAAAATGTCGTCAAACTTGACATTACGTACTTGTGTTGTGCGCTCTGTGACACGGAATTCATGCAACTCGATGATTTCGTCCACCATTTAAAAAACACACACAACAAAGACCTTTATATTGATATCAAAAGCCAAATCCTCCCCTTCAGGTTCGATACGCCGGAACTGAGATGCGCTATTTGTTCAATCGAATTTGCTTCGTTCAAACTTTTACAGGAGCACATGAATACACACTTTAGAAATTATCCCTGCGAAAAATGTGGAGGAAGCTACGTAACAGAAAGATTACTGCAAGGCCACATTAAGCGGCACGGCAATGGCGAATACAAATGCACCCAATGCGACAAAACATTCACAAGCGAACACAAGAGACGCGAGCACGAGCACAGAACCCACCTTGGATTTAACAAGCGAAACAAATGTCACTTTTGCAACGAGAGGTTCCTTGATTACTGGAAGAAAATCGATCACATGGTGAAAGTACACGGTGCGCCACCAGTTGTACTAAAATGTCAAGCCTGCGAGCGAACTTTCAATAATCAGAGGGCTTTGTCGAGGCATAAGAAGAAGGACcatttactggaaaggaggcacaACTGTTCGGAGTGCGAGATGAAATTTTTCAGCAGTAGCTGTTTGCAAAAGCACATGGCAAAGCATACGGGGCTGCGGGAATATATGTGCGACGTGTGCCACAAGTCATATGGCAGGAAGAACACATTGAGAGAGCACATGCGGATACATGCGAATGATCGTCGTTTTAAATGCGAACATTGCGGTCAAGGATTCGTGCAGAAATGTAGCTGGCGCGGCCATATGCGTGCCAAACATGGCGAGAATGTTTAG
- Protein Sequence
- MVVVSQRQSSRLTRLTRVLTAKGNSRSILVTEESLESDSTLIETKNNKVKQAVKEPIAKKWKEIEKHRANVHHILSNSNATPIRCRGSVGYACCFCTGQYPNPADLKQHSIDNHENINETKYMKRKDMHKFNIQMDITGLCCKLCDRNIDTIELLMEHLKNVHKKKVFTDIKAQLIPFKFESDILKCYICGKIFPKFQTLRHHMNEHYSNYKCNECEAGFVCQSMLHEHSQIHKLGTFKCDICPKVFSTFRKKRSHEKGVHSQVEMKNKCPYCDEKFKHYRQKERHMAEAHEKAFPRLKCKACEKSFFTQSSLSIHVKRFHLVHRPHKCPHCDKHFFSMAEVRLHLPTHTGVRTFECDICHKAYGLRKTLNEHMRIHMNDKRHKCELCGQGFIQKNTWRVHMRAKHGLPRTKIAKLKGMTEPETKYANKKSACKKTCRRQKSLDAKRNSKMESDEPRTKHGEELEKHRTNVREILLWSNATPIRCRGGIGYACCFCTDQYPNPNDLKRHSLEEHDSVVISTFMKGRDMHGYFVKLDITALTCKICNSSIDTLEQLMEHLKNVHNKNVDLSIKNHMIPFKFETENLRCCICLNVFHKFHALQVHMNNHCRNYICDICDAGFVNRHMLRCHSDGHKVGTFACEQCSKVFKTIRMKKLHERIVHNSNRPHKCGYCNERFKENWNKNEHLARVHGVRDPGVKCQACDKTFDTQQRWLLHMKRDHLMQRQHQCNRCEKAFYAKRELTDHMVKHTGLREFSCEVCAKTYGRLKTLKEHIRRLHPDDERFKCPHCGVGRVIKIETRLTKPLELKFISKSKTTVRNNSDLSEAKKNQHNLSIILLNSNANPIRCKDSFGYGCAFCPKQFPQPTNLKKHFLEEHNSDRLIKYMSSKLFENVVKLDITYLCCALCDTEFMQLDDFVHHLKNTHNKDLYIDIKSQILPFRFDTPELRCAICSIEFASFKLLQEHMNTHFRNYPCEKCGGSYVTERLLQGHIKRHGNGEYKCTQCDKTFTSEHKRREHEHRTHLGFNKRNKCHFCNERFLDYWKKIDHMVKVHGAPPVVLKCQACERTFNNQRALSRHKKKDHLLERRHNCSECEMKFFSSSCLQKHMAKHTGLREYMCDVCHKSYGRKNTLREHMRIHANDRRFKCEHCGQGFVQKCSWRGHMRAKHGENV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -