Pmne024001.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000082.1:5823931-5831912[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 38 0.0039 0.81 12.2 0.6 1 20 64 83 64 85 0.95 2 38 0.9 1.9e+02 4.7 2.0 2 23 157 178 154 178 0.88 3 38 0.0098 2.1 10.9 0.2 1 23 182 204 182 204 0.95 4 38 0.21 44 6.7 1.5 1 21 209 229 209 232 0.74 5 38 0.02 4.2 10.0 0.4 1 23 238 261 238 261 0.95 6 38 1.6 3.3e+02 4.0 0.1 1 14 268 281 268 285 0.90 7 38 0.0019 0.39 13.2 0.2 1 23 353 376 353 376 0.95 8 38 0.18 38 6.9 3.0 2 23 403 425 402 425 0.96 9 38 0.011 2.2 10.8 3.0 1 23 447 469 447 469 0.98 10 38 0.00059 0.12 14.8 0.3 1 23 473 495 473 495 0.97 11 38 0.29 61 6.3 0.1 1 21 529 549 529 552 0.87 12 38 0.00036 0.077 15.4 1.1 1 23 559 582 559 582 0.97 13 38 0.71 1.5e+02 5.1 0.8 1 18 589 606 589 606 0.95 14 38 5.5 1.2e+03 2.3 0.3 1 23 656 678 656 678 0.92 15 38 0.5 1e+02 5.6 0.2 1 23 748 770 748 770 0.98 16 38 4.5e-05 0.0095 18.3 2.7 1 23 774 796 774 796 0.98 17 38 0.0088 1.9 11.1 0.9 1 23 801 824 801 824 0.96 18 38 0.21 44 6.7 2.7 1 23 830 853 830 853 0.96 19 38 0.045 9.5 8.8 0.1 1 23 859 882 859 882 0.98 20 38 0.59 1.2e+02 5.3 0.2 1 23 933 955 933 955 0.94 21 38 0.85 1.8e+02 4.8 0.0 2 23 979 1001 978 1001 0.95 22 38 0.039 8.2 9.0 5.6 1 23 1023 1045 1023 1045 0.97 23 38 0.003 0.64 12.5 2.3 3 23 1051 1071 1050 1071 0.97 24 38 0.19 40 6.9 1.2 1 23 1078 1101 1078 1101 0.95 25 38 0.28 59 6.3 0.7 1 23 1107 1130 1107 1130 0.94 26 38 0.1 21 7.7 1.5 1 23 1136 1159 1136 1159 0.96 27 38 0.023 4.8 9.8 0.8 1 23 1165 1187 1165 1187 0.98 28 38 1.8e-05 0.0038 19.5 2.7 1 23 1193 1215 1193 1215 0.99 29 38 0.011 2.2 10.8 6.0 1 23 1221 1243 1221 1244 0.94 30 38 0.0077 1.6 11.3 0.2 2 23 1359 1380 1358 1380 0.97 31 38 0.022 4.6 9.8 4.5 1 23 1402 1424 1402 1424 0.97 32 38 0.00028 0.058 15.8 0.6 1 23 1428 1450 1428 1450 0.98 33 38 0.037 7.9 9.1 0.1 1 23 1455 1478 1455 1478 0.96 34 38 0.00015 0.031 16.6 2.0 1 23 1484 1507 1484 1507 0.98 35 38 0.13 28 7.4 1.2 1 23 1514 1537 1514 1537 0.95 36 38 0.17 36 7.0 3.2 1 23 1543 1565 1543 1565 0.95 37 38 2.1e-06 0.00043 22.5 1.0 1 23 1571 1593 1571 1593 0.99 38 38 7.3e-06 0.0015 20.8 1.5 1 23 1599 1621 1599 1622 0.96
Sequence Information
- Coding Sequence
- ATGGAAGATGAGAGTATCGTTAAGGTAGAAACCAATGATAATATACGATTAGGGGAGTCAATTATCCATAAACAAAAGCGACGCTATGTCCGGAGCGCTCGAGCCGAAGCGAGGATTGTAACAAAGAAAAACGCCAAATCTCTCTTGGAATGTTGGTCCTTGTGCCCGTTTAGATGGCAACGAAACCGGTTCAAATGTGCATTCTGCGAGGAGAGCTTTATCCAGTGCAGTGATCTGAGGGAACATGTTAGCGAGTGCTCATCTAAGCATAACGTCAAAGATATTTACAGCAAATTCAAGGAAATGTCTCTCATCAACGTCGACGTCACTGGTGCTTCGTGCCGTCTCTGTAGATGTCCTTACTCCGGAATTAATCAAATGAGACAGCACGCTGTACAGCATGGATATGAGTTCAACACGTCCCAACCAGACGGCGTCCTGCCTTTCAGTCTCGACAAGGAGTGCTGGCGTTGTATTATATGCCACGAAGATTTCAACAATTTTCTCAAGCTCTACGAGCACATGAATGTCCACTACCAGCATTATATCTGCTCCACTTGTGGGAAAGGTTACATGACCGCGCCGCGTCTGAGGAAACATTCCGAGGTCCACATCACAGGGTCGTTTCCATGCGATAAATGCGATAGGGCATTCACAATGCGCGCAGCTAGGGACCATCATAAGGCACACGCCCACGCGAAAGGTCCTCGATACGAATGCCCACAATGCAACATGCGTTTCAACGGATACTATGATAGAATGAATCATTTGAACGAAGCGCACAGAGAGAAAGAGGTGTCTTACCGTTGTAATGCTTGCGAGCTAACGTTCAAGAcgagcgGTTCCGCTAACGCGGAAGCGGTGGCAAACGTAGTTAAACGAGTTAGAAAGTTAAAAGAGAACGTAAGTGCGCGCCAAATGCGAAGACGCCGACGTGCCAACAACCAGCTACCGGAGGAGTCTGAGAGGCGAATCTCGAAAACAATGATGAGAAGGAACACCATGGCCATATTGGAATGTTCCACTGCCTGGGCCTTTCGATGGTTTCGTAACGCCTTTTTCTGTTCCTATTGCGATGAAAAGTTCGTTGACCCGCAGCCATTGCGTGAACACGTGCTCTCATCCCACATCAGCTACTCCCCCACCGCGCGTATCTTCTCGAAGCTGACCGAGAACAACATGGTGAAAATCGACATCACCAACCTAAAGTGTAGGTTGTGTAACTATGGATGTCACAGCATAGACGCACTCAAAAATCATTTAAAGACTGCACATAGGAGAACACTTAATAGTGAATACAGCGATGGAGTTCTGCCATTTAAGTTAGATGAGATCGGGTTCCACTGTCAGGTGTGTTTTGAGTATTTCAGTAGTTTCGCGAAGTTGAATGAACATATGAATTCGCACTATCAGAATTACATTTGTGACGCCTGCGGGAAGGCTTTCATTTCGAAATCTAGGTTCAGAACTCACGTGGAGTCACACGAGATCGGCAGTTTCCCTTGCGGTGAATGCGACGAAGTTTTACATACGCGAGCGGCCCGTACGTGTCACAGAATGAAGGTGCATAGAAAAGGTATTCGGTACACGTGCCCTCGATGTCCTGCAGTGTTCACCGCGTACTACGCGAGAGCGAGGCATTTAGTGGACGGGCACGCACAACAGAGAATGGATTACGATTGCACCACGTGCGGTAAAAGTTTCGAGACGAGTTGCAAACGGGCGGCTCACATCCGCGTAGCTCATATGCCTGTCGAGAAACGATACGAGTGCCTTTATTGTCCCTCGTActtcgtcagcaaatcgaaacTGCGACgacAAGAAGAAACTGCTCCGGATGCATCGGTAAAAGAAAAGTTTGATATAAAATGGAAAAAGATACGCAGAGTTGCGGAAGACAAGGCTAACGCAGGTATTATCTTGCAGAATTCTAATGCTGTTGCATTTAGATGGCATCGTGGAAGATTCATGTGTGCTTACTGCCCGCTCATTTGCCCAAGTGTCACAGAGATACGTCAGCACTCCAATGAACACGCTAACAAGCAAGATATCTTTCTAAATAGCGGGGTGCGCAACTCTTTCCCATTAAGAGTTGATATCACGGATTTAACTTGTATGCTATGCTTTGACAGAATTGaaaatttggaaaatttgaaGGTTCATCTgtcaaataaacattttaaattactcAATCCCGACTATAGTGACGGCTTAGTACCATTCGTGTTGACGGGTAAAGACTATAAATGCGTTAATTGTAGTGCATTGTTCGAGAGCTTCATGGGTCTATATATTCACATGAACGAACATTACCAGACATACGTGTGCTATACCTGCGGTAAAGGTTATTCCAGCAAACATAAATTAATGGCTCACCAAAAGTCACACGAATCAGGTCAATTCGAATGTACCAAATGCGACAATGTGTTTTCAAACCGGTTGGCCAAATACAGGCATATGTCCAGCGCTCACGGGCCCAAGGAGCGCTATAGATGTCCAGTGTGTGGAGATCACTTTGATTCCTATCATTCCCGCTTGAGACATCTCGATAAAGTACATGGACAGAAGATTGAATACCGCTGTAGTGTGTGCCCTTCTGTATTTGGAACTGGCACTTTAAGAAATTCTCACATGAGAGTCGTTCATAAGAAAAAATCAAAttttcttttgtttttagggCCTAAGGAAAACAATGTTAAATGGAAACCAAGACGGAAGTTTAACGATCACAGGGATAACGCTGCTATTATTCTCGAATGTTCCAACGCGTGCCCATTTAGGTGGAAGAGCGGTGCGTTCGTCTGCGCGTTCTGTCCGACCTCGTTCGGGGACTTTACGGGAGTCAGGGAACACACTTCAGAACACCCGAACAGGGTAGAAGCAGTACGCTTAGCGCGTCCCTTCGACACAATAAAAGCCGACATAACAAATCTCAGATGTGATCTATGTTTACAAATCGTGAAGGATTTAGATGAGCTCGCCGATCATCTAATCAGTGGACACGAGAAACCTATTGTCAAAGACCGCGGCGTAGGCATCACCCCTTTCTATTTGAAAGGCAAAGAGTTTAACTGTTCGCACTGCAGCGAACACTTCGATTTGTTCACTAATCTGAACACTCATATGAATCaacactataaaaataatatatgctATAAGTGCGGTAAAGCGTTTTCGGCCTCTCACAGATTGCATGCACACATGGTCACCCACGAATCGGAAGACGATGGGTTCAAATGCACTAAATGCGATGATATATTCGCCACTCGTAAACTCAGGAGTAGCCACATGGCCTACATGCACGGACCAAAGCTGAGATATAGGTGCCCGTATTGTAAAGATAAATTTAAGGCGTACGGCGACAGAGCAAAACATTTGAAGGAAGTCCACGACAGGAAAGTGGAGTATCCTTGCCACTTGTGTCCGGCAGTGTTTGCTCTATGTAACCAGAGAACGAAACATAtccagcaagttcatataaaacaCAAACCGTTTCAATGCGAGTACTGCGTGTTTAAGTCTTCGACGGCGGCCAGGTTGAGGAGTCACATGGTCAAACATATCGGCATCAGGAAGTATCAATGTGACATTTGTAAAAAAGCCTATTGTAGGATCAAAACTCTGAGAGAGCACATGCGGATCCATAATAACGACAAGCGGTTCGTCTGTGAGTGCTGCAACGCCGCGTTTGTGCAGAAATGCAGCTTGCAGAGTCACATGAGGACGCATCATCCAATGGCTCCAACACTGAACAAGACAAAACAATCTGACttcaatATTAAGCAGGAAGTGGAATCTGACTGTGAGAATATCAAAGCTGCAGTTATTGTGCCAGCTAGGGACGCGGGCAACGAGAGGCGCGCCGCGTTTcggaataatattaaaattatattagaatCGTGCACGGCGTGCCCGTTCAAGTATAGGAAGGGCACGTACTTGTGTTTCTTCTGTAAAACCTCGTTCCTTGAACCGGAACGCTTACGAGAGCACACCCAGCAGCTACACTCTGACGTTAAGCAACTGTTGAAGCCGCGCAAGTACGAACCGCTGAAGATGGATTTCGCCGTGACCACCTGCAAAATGTGTGGCACCCCTATACCCGACTATGAGACGCTTAAATCGCATCTTCGCGAACACGGTAAAGTGCTCGACTGCACGCACGGCGACAGCGTGCTGCCTTATAGCCTAACTAAGGACGACCATCGTTGTCAGATATGCGGCAAGCGGTACGAGATGTTCCTGAGTCTCCACAAACACATGAATGATCATTACGAACACTTCATTTGCGAGACCTGCGGGAAACGTTTCGCGACTTCGCAGCGTATggtcaatcacgccagaacgcaCGAGCGCGGCGTATTTCCCTGCAAACGGTGTCAAGATTCGTTTCCTTCATACGCGTCTCTGTACGCCCACATAGCCAAGGTCCATCGATCGAATAAACGGTACAAGTGCCCAATATGCGACGAAAAGTTCGCCTCATACAAGCACAGGCTAAAACATTTGAACACGGTGCATGGAGAGAAGACGGCTATATTCCCTTGTCCTTCCTGCCCACGTGTTTTCGACCTGTGCAGTCGACGCACGGCTCACATTCGCTTCCAGCACTTGCAGGAGCGAAACCACTCATGCTCGTTATGCTTGATGAAATTTTTCACTAAATATGAGTTACAAGAGCATTCGATAAAGCACGGAGGGGAGAGGATTTATCAGTGTGACGTGTGCAAGAAGTCCTATGCCCGGTTGAAAACCTTAAGAGAGCACATGCGGATACACAACAATGACAGACGATTTGTGTGTCCCGTCTGTGGACAGGCGTTCATACAAAACTGCAGTCTGAAGCAGCATGTTAGGGTTCATCATCCGAGTCACCCGAAAACCGACGTATTTTAG
- Protein Sequence
- MEDESIVKVETNDNIRLGESIIHKQKRRYVRSARAEARIVTKKNAKSLLECWSLCPFRWQRNRFKCAFCEESFIQCSDLREHVSECSSKHNVKDIYSKFKEMSLINVDVTGASCRLCRCPYSGINQMRQHAVQHGYEFNTSQPDGVLPFSLDKECWRCIICHEDFNNFLKLYEHMNVHYQHYICSTCGKGYMTAPRLRKHSEVHITGSFPCDKCDRAFTMRAARDHHKAHAHAKGPRYECPQCNMRFNGYYDRMNHLNEAHREKEVSYRCNACELTFKTSGSANAEAVANVVKRVRKLKENVSARQMRRRRRANNQLPEESERRISKTMMRRNTMAILECSTAWAFRWFRNAFFCSYCDEKFVDPQPLREHVLSSHISYSPTARIFSKLTENNMVKIDITNLKCRLCNYGCHSIDALKNHLKTAHRRTLNSEYSDGVLPFKLDEIGFHCQVCFEYFSSFAKLNEHMNSHYQNYICDACGKAFISKSRFRTHVESHEIGSFPCGECDEVLHTRAARTCHRMKVHRKGIRYTCPRCPAVFTAYYARARHLVDGHAQQRMDYDCTTCGKSFETSCKRAAHIRVAHMPVEKRYECLYCPSYFVSKSKLRRQEETAPDASVKEKFDIKWKKIRRVAEDKANAGIILQNSNAVAFRWHRGRFMCAYCPLICPSVTEIRQHSNEHANKQDIFLNSGVRNSFPLRVDITDLTCMLCFDRIENLENLKVHLSNKHFKLLNPDYSDGLVPFVLTGKDYKCVNCSALFESFMGLYIHMNEHYQTYVCYTCGKGYSSKHKLMAHQKSHESGQFECTKCDNVFSNRLAKYRHMSSAHGPKERYRCPVCGDHFDSYHSRLRHLDKVHGQKIEYRCSVCPSVFGTGTLRNSHMRVVHKKKSNFLLFLGPKENNVKWKPRRKFNDHRDNAAIILECSNACPFRWKSGAFVCAFCPTSFGDFTGVREHTSEHPNRVEAVRLARPFDTIKADITNLRCDLCLQIVKDLDELADHLISGHEKPIVKDRGVGITPFYLKGKEFNCSHCSEHFDLFTNLNTHMNQHYKNNICYKCGKAFSASHRLHAHMVTHESEDDGFKCTKCDDIFATRKLRSSHMAYMHGPKLRYRCPYCKDKFKAYGDRAKHLKEVHDRKVEYPCHLCPAVFALCNQRTKHIQQVHIKHKPFQCEYCVFKSSTAARLRSHMVKHIGIRKYQCDICKKAYCRIKTLREHMRIHNNDKRFVCECCNAAFVQKCSLQSHMRTHHPMAPTLNKTKQSDFNIKQEVESDCENIKAAVIVPARDAGNERRAAFRNNIKIILESCTACPFKYRKGTYLCFFCKTSFLEPERLREHTQQLHSDVKQLLKPRKYEPLKMDFAVTTCKMCGTPIPDYETLKSHLREHGKVLDCTHGDSVLPYSLTKDDHRCQICGKRYEMFLSLHKHMNDHYEHFICETCGKRFATSQRMVNHARTHERGVFPCKRCQDSFPSYASLYAHIAKVHRSNKRYKCPICDEKFASYKHRLKHLNTVHGEKTAIFPCPSCPRVFDLCSRRTAHIRFQHLQERNHSCSLCLMKFFTKYELQEHSIKHGGERIYQCDVCKKSYARLKTLREHMRIHNNDRRFVCPVCGQAFIQNCSLKQHVRVHHPSHPKTDVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -