Pmne024057.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000082.1:6355733-6359339[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.1 21 7.7 0.1 3 23 2 22 1 22 0.96 2 31 4 8.5e+02 2.7 0.1 3 23 51 72 49 72 0.94 3 31 0.25 53 6.5 2.1 2 23 93 115 92 115 0.94 4 31 0.0005 0.11 15.0 3.7 3 23 122 142 120 143 0.95 5 31 8.1e-05 0.017 17.5 1.0 1 23 147 170 147 170 0.96 6 31 0.0085 1.8 11.1 1.4 2 23 173 195 172 195 0.96 7 31 5.8 1.2e+03 2.2 0.2 2 20 201 219 200 221 0.91 8 31 0.00071 0.15 14.5 3.4 1 23 272 295 272 295 0.94 9 31 3.1 6.6e+02 3.0 0.4 2 23 323 345 322 345 0.93 10 31 0.00062 0.13 14.7 0.1 1 23 367 390 367 390 0.95 11 31 4.3e-05 0.0091 18.3 3.9 2 23 396 418 396 418 0.95 12 31 0.0029 0.6 12.6 3.4 1 23 423 446 423 446 0.95 13 31 0.0034 0.71 12.4 1.1 2 23 452 474 451 474 0.94 14 31 0.00014 0.028 16.8 3.3 1 23 478 501 478 501 0.97 15 31 0.032 6.8 9.3 0.6 2 23 508 529 507 529 0.96 16 31 1.4 2.9e+02 4.1 1.1 1 10 535 544 535 548 0.95 17 31 0.00085 0.18 14.3 3.6 3 23 591 611 589 611 0.96 18 31 0.019 3.9 10.0 0.0 2 23 639 661 638 661 0.91 19 31 0.014 2.9 10.4 1.0 1 23 681 704 681 704 0.96 20 31 1.4e-05 0.0028 19.9 1.0 1 23 709 732 709 732 0.97 21 31 2.7e-05 0.0058 18.9 1.1 1 23 737 760 737 760 0.95 22 31 0.012 2.6 10.6 2.5 2 21 763 782 763 785 0.94 23 31 0.16 34 7.1 5.3 2 21 792 811 792 812 0.95 24 31 0.0044 0.92 12.0 1.3 1 23 867 890 867 890 0.94 25 31 0.88 1.8e+02 4.8 0.1 2 23 963 986 962 986 0.94 26 31 7.1e-05 0.015 17.7 0.3 3 23 993 1014 992 1014 0.94 27 31 0.003 0.64 12.5 4.6 2 23 1019 1041 1018 1041 0.93 28 31 0.0024 0.51 12.8 4.7 1 23 1046 1069 1046 1069 0.97 29 31 6.3e-06 0.0013 21.0 5.2 1 23 1073 1096 1073 1096 0.97 30 31 0.00052 0.11 14.9 0.3 3 23 1104 1124 1102 1124 0.96 31 31 0.0001 0.022 17.1 0.6 1 23 1130 1152 1130 1152 0.97
Sequence Information
- Coding Sequence
- ATGTGTTTTTATTGCGGGGAGGATTTGCCAGAGTACGAGGAACTAAGAAAGCATACGAAAGCGCACGGCTCGTGTTCTGAAACTGATCGAGCGATTAAACTCGTTAAAGCTGGCGATGCTGAAGTTAAAATCGATGTATCGAACATAGCTTGTGAATTATGCGAAGACACGTTtaacaattttgatgaaatagTTGATCATTTGTATACTAAACATGGACTGTCATATGATAGAAAGGTGCGTTTAGAAATAACGAAATACCGGCTCGCAGATCTCAAGTGTTTACTTTGTGATCAACAATTTAGCTACTTCAATAAATTAGTGATTCACGTAAATAATTGTCATCCGAATCAATGCTTGTTATGTCATGAATGTGATCAGAAGTTCAATAAAAGACGGGACTTAGATGCACATATTAGATCTCATCATAAAAAAGATTACACTTGCTTAAAGTGTCCCATAACGTTCAAATCTAATTACGAGCTACAGACTCATAAAATGAACGCTCACGCGTCCTCGTGTAATATTTGTTTCAGACAGTTCTCTTCAGCAAACAAAAGGTTAAAACATATGAAGGTAGATCATGTCTCTGATGCTTTACAGTGTGGATTCTGCCTTAAAGTTATGACTACAAAGCAGGGTTTCCTGCGACACGCAACAACTTGTCCACGTATTGTTGATGGCGTTAGAATATCCGATCCCATTTTAGTAGATGACAAAGAAAAGAAACCTTCAGTTAAGCAAATACGAAATGATTTAGCTTGCATCCTAAATATGTCTACAGCTATGCCTTTTAAACATTACATGAGTAGATTTAGATGTTTCTATTGTTCCAAAGATTTCACGGATTGCGATGATCTAAAGCAACACACTGTTATGGAGCATCCTCTCTGTGATATCGGATTAAAGGCTATGAAACTACGGAATAGGGAAGAGGGTCGTATTAAAATTGATACGTCCAAACTGTCCTGCAAAGTCTGCTATGAAGCTTTGCTCGatttaaatcatttaataaacCATCTAACAACAGAACACAAAGCTAATATAGATAAAACTGTTGATAACCAATTGCAGCCGTACAAACTTACGAAGGATAACTTTGCTTGTCCTATATGCGGGGAGGTCTATAGATATTTTGCGATGCTATTGAAACATGTTAGTGTTACGCATACGGACAACAAAAATGTCTGCTCTTATTGCGGTAAATGCTTTAGGTCCCATCCAAATCTTCGTGCTCACGTATCGCGGCGACACAGAGCCGCGGCGTTTAGATGTGAGCATTGCAACTCGGAATTTATCTCTAATAATCACCTGCGAACGCATTTGGGCAAAGCACACGGCACCAAAGTGGTGCAATGTTTGGAGTGCAAAGAGCGATTCACGTCGCGCTATTTCATGCAGAGGCATTTGATAAATTCGCATCAATCTGGTCATAAATGTTCTTACTGCGGCAAATTATTCATTAGGAATTCATTTATGGTTAATCATATAAGGCGGACGCATTTTAAAGAGAAGAATGTCGAATGTTCCTTGTGTCGCGAAAGGTTTTTTGATGCGCAACGCTTAAAAATGCACATGGTAAAACATTATGGGGAACGGAATTTCCATTGCGATGTTTGTGGAAAGAAATTTCTTTGGAAGAAAAACCTGAGAGATGAAATTCCGCAAGGGCCGTACGAGAACTGTACCTCTGAGAGAAGGAGGAAAAACTTGCAAATTCTTTTCAACAATACAACTATTTTGCCGTTCAAGTGGCGAGGAAGGTGCCTCTGTTTTTATTGCGGAAAGAGTTACACGGAGTATACGGATTTGCGGAAACACACCCAATCACACGGCCCTTGCACCACGAAAGACTATTCATTGAAACTAATAAAAGGAAATCACATTGAAATTAAAATCGATGTATCGGATATCACGTGTGAAATTTGCAATGAACCTTTCACTACATTCGACGAAATAATCGATCATTTAATCGGAAAACACAACATGGACTACGATAAAAGTATAGACACGCCTCTTCAAGAATACAGACTTGCGGATTTCCGTTGTCTATTTTGCGACCAACAGTTTACTTACTTCGGATATTTGGTGAATCATGTGAACAACGTTCATCCGCAAAATAATTATGTTTGTAATGATTGCGGTGTGAGTTTCAATAAGAAAAGAGATTTGGCGTTGCATATACGACATAACCATCGCCAAGGAGGATACTCTTGTCCAGAATGCCCACAGAGTTTCGAATCTCATGGCCTTCTTCGTAAACATCAAAACGATTTCCATTTCAGGAAATGTAAACGTTGTGGTATGAACTTTGCTTCCTATAGTCTACTATTGAAACATTTACAATGTGATCATCCAGATGACGCCAGCGCCAAATGTCCGCATTGTTCCAAACAATGCCACTCGTCTCAAGGTTTAAAACAACACATAAATAAGTGTAAAGTTAATATGCTTGTACAAATAGATCAGCCTGTAGATAACCTTACCGTCGACAATATGCTGCAACcgaaaaagaaacaaaatgtCTTACAAATACGACAGAATATTCAGTGCGTTCTGAACATGTCTACAGCGTTACCGTTTAAGTTTTTCGCGAAATATTACTGTTTTTATTGCTCGAAGAAATTCGTTGAATTTGACGAACTAAGGGAACACACTTTACTAGAACATCCTGTATGCGATTTAAAATCAAAAAGCTTGAAGAAATGTAAAGGAGATAGAATAACCGTAAAAGTAGATATAACAAAACTGAGCTGTAAAATTTGCGGCCAGCCTATGGATAATTTAGACATTCTAATAGATCACTTAGTCTCACAACATGACGCCAACTACGACAAATCCGTAACGGGCTGTCTAGAGCCTTACAGGGTGATAAAAGACAACATGCCGTGCCCGATCTGCCCAAATCGCGTGTTCAGATACTTTGGAATTCTACTTAGACATATAAACTCGGAGCACAGTAACAACAACAGAATCTGCGATTTTTGCGGCCGCAGTTTTAAGAATGTGACAAATCTAAAGGTGCATATTACTTACGCACACACCGGCGCCTGCGAATGCGACATTTGCGGCACGAAGTACAAGAATCAGTGGTGTTTGAACCGGCACAAAGCCAAAAGCCACAACGCGAAAGATTACAAATGCCCGAAATGCCCAGAGTGTTTCCAGTCAGAGTACCACAAGCAAAAACATTTGATCAAAGTCCACGACATTGGTCACAAGTGTACGTACTGCGGGAAAATGTTCACTAGAAACTCGTTCATGAAGGACCATATACGTAGGACGCATCTGAAGGAGAAGAATGTGATCTGTTCGGTCTGTAACGAGAGATTCTTCGACAACTACCTGCTGAGAATGCATATGGTGAAGCACGAGGGCGAGCGGAAGTTCAGCTGTGAAGTTTGCGGCAAAGCGTTTCTTAGGAGGAGCAACCTCAGTTCGCACAAGGAAATGCATAAGAAGTATGGACATTTACAGCCGTAA
- Protein Sequence
- MCFYCGEDLPEYEELRKHTKAHGSCSETDRAIKLVKAGDAEVKIDVSNIACELCEDTFNNFDEIVDHLYTKHGLSYDRKVRLEITKYRLADLKCLLCDQQFSYFNKLVIHVNNCHPNQCLLCHECDQKFNKRRDLDAHIRSHHKKDYTCLKCPITFKSNYELQTHKMNAHASSCNICFRQFSSANKRLKHMKVDHVSDALQCGFCLKVMTTKQGFLRHATTCPRIVDGVRISDPILVDDKEKKPSVKQIRNDLACILNMSTAMPFKHYMSRFRCFYCSKDFTDCDDLKQHTVMEHPLCDIGLKAMKLRNREEGRIKIDTSKLSCKVCYEALLDLNHLINHLTTEHKANIDKTVDNQLQPYKLTKDNFACPICGEVYRYFAMLLKHVSVTHTDNKNVCSYCGKCFRSHPNLRAHVSRRHRAAAFRCEHCNSEFISNNHLRTHLGKAHGTKVVQCLECKERFTSRYFMQRHLINSHQSGHKCSYCGKLFIRNSFMVNHIRRTHFKEKNVECSLCRERFFDAQRLKMHMVKHYGERNFHCDVCGKKFLWKKNLRDEIPQGPYENCTSERRRKNLQILFNNTTILPFKWRGRCLCFYCGKSYTEYTDLRKHTQSHGPCTTKDYSLKLIKGNHIEIKIDVSDITCEICNEPFTTFDEIIDHLIGKHNMDYDKSIDTPLQEYRLADFRCLFCDQQFTYFGYLVNHVNNVHPQNNYVCNDCGVSFNKKRDLALHIRHNHRQGGYSCPECPQSFESHGLLRKHQNDFHFRKCKRCGMNFASYSLLLKHLQCDHPDDASAKCPHCSKQCHSSQGLKQHINKCKVNMLVQIDQPVDNLTVDNMLQPKKKQNVLQIRQNIQCVLNMSTALPFKFFAKYYCFYCSKKFVEFDELREHTLLEHPVCDLKSKSLKKCKGDRITVKVDITKLSCKICGQPMDNLDILIDHLVSQHDANYDKSVTGCLEPYRVIKDNMPCPICPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKNVTNLKVHITYAHTGACECDICGTKYKNQWCLNRHKAKSHNAKDYKCPKCPECFQSEYHKQKHLIKVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVICSVCNERFFDNYLLRMHMVKHEGERKFSCEVCGKAFLRRSNLSSHKEMHKKYGHLQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -