Pmne054916.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000115.1:35976110-35976838[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-07 0.00013 23.6 0.0 5 40 14 49 10 53 0.84
Sequence Information
- Coding Sequence
- ATGAAGGGCGAGAAACGCAGAAATTATGACTCTTCACGCTTCAAGGAGGCTTATATGAAAGTTATAAAGGATAATTGGTCAGTGTACAAGGCGTCGAAGGAATATGGCATACCGTGGTCTACTTTGAGAAGACACATAGCTACTCATGGAGGTGAAAGTTTCGACTTACCTAAACTTGGGAGACCATTCACATTAGACAGCGACCTTGAATGTAAGTTTGTTTCCTACATAATTAAAATGCAAGAACTAGGATTTGGTCTCAGCGTCACAGACATCAAAGCTAAATGTTACGCTTTAGCAGTCCAAGCAGGAAAAGATCACCAGTTTAACGACGCTAAACGTAAAGCTGGGCCTTATTGGTGGTGGTCGTTTAAAGAACGGTACGGCCTTTCATTGCGCACGCCAGAAAAGCTTGCAGCATGCCGAGCTGTTACTGCTAACAGACAAAACATTGACGATTTTTATAAAAAGCTACTGGACGTCGTTATTGAGCTGGATATTCTGCAAAAGCCGGAAAGGATTTATAACTGCGACGAAACCGGTGTAACGTTCGTCGTAAAACCGTCAAAAATTGTCACTCAAACTGGAAAGAAGGTAATTTACAGTAGAACTTTTGCAGAGAAAGGTGTCACACAAACGGTGCTTGGGTGCTGTAGTGCGAGCGGAGCGTCTGTACCCCCCTTGATCATTTTTAAAGGTGTCCGATCTGATTTTCCTATTAATGTTTAA
- Protein Sequence
- MKGEKRRNYDSSRFKEAYMKVIKDNWSVYKASKEYGIPWSTLRRHIATHGGESFDLPKLGRPFTLDSDLECKFVSYIIKMQELGFGLSVTDIKAKCYALAVQAGKDHQFNDAKRKAGPYWWWSFKERYGLSLRTPEKLAACRAVTANRQNIDDFYKKLLDVVIELDILQKPERIYNCDETGVTFVVKPSKIVTQTGKKVIYSRTFAEKGVTQTVLGCCSASGASVPPLIIFKGVRSDFPINV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00922819; iTF_00922820; iTF_00114888; iTF_01155113; iTF_01153898; iTF_01153899;
- 90% Identity
- iTF_00922819;
- 80% Identity
- -