Pmne040355.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- clz9
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000089.1:32925007-32927106[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-07 7.2e-05 24.4 0.0 4 41 21 59 18 61 0.87
Sequence Information
- Coding Sequence
- ATGCCATCCGTGTACAGACGAAAGCCTGGCAGTCGTCGATATGTCGACTACACCCAggcagatttaaaaaaatgtctggaTGCAATCCAATCCAAAGTGCTCACACAAAGAGCGGCTGCAGAGTTATTTAATATTCCTCGCAGCACTTTGAAAAACAAATTAACCCGGAAACACCCTAACAAACCAGGTAAACCTACAATTTTTACTGAAGAGGAAGAAAAGGCGTTTGAAGCTCACATAACTGCCCTTTGGGAATATGGGTTTCCGCTGACAGCATTCGACCTAAAAATGATAATCAAAAATTACCTTGAATCCCAGGGAAGAGTTGTAAAAATTTTTAAGAACAACATTCCTGGTAAAGACTGGTTGGCTTCTTTTCTTTCACGACATCAATCTCTTTCACGGCGACTTGCTAACAATATCAAAAGAGTCCGAGCTCAAGTGTCGGAAGATGTCATTTCCAATTTTATAGAAAACATCGACAAAGAACTAGAAAGCGTTCCACCCGAAAACATATTCAACTACGATGAAAGCAACCTTTGTGATGACCCAGGAAAAAAGACTATATTATGCAGAAGAGGAACAAAATATCCGGAAACAATAGTAAACGCTACAAAAGTTAATTTTACTGTCATGTTCTGTGGCAACGCCGCTGGGGAAACAATTCCACCGTTCATCGTTTATAAGTCGGATCATCTCTGGTCGACTTGGACTGAAAATGGTCCCGAAGGCGCTCGATATAATAGGACAAAGAGCGGATGGATGGACAGCGCAACTTTTGAAGACTGGTTTCTCAATCATCTTATGCCAGTTCTTAAGAAGAAAAATGGTAGAAAAGTAGTGATTGGAGACAACCTTGCTTCACACATTAATAAAACAGTTTTGAACGAGTGTGAGAAGCACAATGTTAGTTTTATTTGTTTGCCACCCAACGCTACACATATACTTCAGCCACTAGACGTCGCATATTTTCGACCTTTGAAGTGCAAGTGGCGGCAAGTATTGCTTCAATGGAAGAACAGTCAACTGGGTAGGAAACTGTCGACTACACCTAAGGATCAGTTTCCACGACTATTAAAAACGGCTTTGGATTCTTTGACCGAGACCAAGGCGAATTTGATTGCTGGTTTCAGAAAGACAGGCATATACCCCATTGACAAAGAGGAGCCTTTACCTAGATTACCCAAACAAGATCGAATAATAAACGCAGGTCTTATAGGGAACTCTTTTATGCATACATTGGTGCAGTACCGAGCTGAGGCGTGCCCAGAACCGAAAACAATTAGGAAAAAGAAACTTAATGTGCCACCTGGAAAATCAATCTGTGCCACTGACCTTGCAGAAGCAGGTCCATCGGGTTTACAGCAGGCTAAAACTATAAAGGAAAAGAAAAGGGCAACAAAACGAAGACAACGTAACGTCTCTTCATCTTCAAGCTGCAGTGACAGGACCATCAGTCTAGCTTCTTCCACTGAAGACCACATAATGCCTTATGACTCTGAGGATGATGTTCTTCTGGCCAACTATGTGAGTCAGATTAGTGATACTGATGCACCTACATTTCGACATTCGCCTGATCTTCAGCAGGAGAGTGAAGTAGAAGAGGAGTGTGGCTCTCCTGTTCTTCAAGTAATAGATGTAGAGCAACAGCTGTTTGATGTTTTTAAAGACTTCACTCCCATTCAATCTATTGAGGGTATACAGATCGTTGAAGAAAAATGTAGTGAAAGAGAGAAAATGCAGGTAGTTGTTGAAGATTGTCAAGACAAAAACTTGCGGGTCTCGCCCGCACGTCAAATCAAAAAGTTACCGCAGGATACATTAGAGCCACCAGGTTTTCGAGGAGGTTCACTTGATCTAGATGTTGTTGTAGGCAACCATGTTCTAGTAACATGGAACTCACGCAAATACCCAGGTAAAGTCTTAGCAGTTTCAGAGGAAGGAGCCTTTATAACGTGCATGAAAAAAGGTAAAATGTACTGGCGGTGGCCCACGATAAAAGATGAACAACTTTATGGTTGGGACCACATATTGTGTAAGATTGGACCTCCAAAATTGGAGAAAAAGGGTTGTTTCTCGGTTCCGGAAATGAACGTGTAA
- Protein Sequence
- MPSVYRRKPGSRRYVDYTQADLKKCLDAIQSKVLTQRAAAELFNIPRSTLKNKLTRKHPNKPGKPTIFTEEEEKAFEAHITALWEYGFPLTAFDLKMIIKNYLESQGRVVKIFKNNIPGKDWLASFLSRHQSLSRRLANNIKRVRAQVSEDVISNFIENIDKELESVPPENIFNYDESNLCDDPGKKTILCRRGTKYPETIVNATKVNFTVMFCGNAAGETIPPFIVYKSDHLWSTWTENGPEGARYNRTKSGWMDSATFEDWFLNHLMPVLKKKNGRKVVIGDNLASHINKTVLNECEKHNVSFICLPPNATHILQPLDVAYFRPLKCKWRQVLLQWKNSQLGRKLSTTPKDQFPRLLKTALDSLTETKANLIAGFRKTGIYPIDKEEPLPRLPKQDRIINAGLIGNSFMHTLVQYRAEACPEPKTIRKKKLNVPPGKSICATDLAEAGPSGLQQAKTIKEKKRATKRRQRNVSSSSSCSDRTISLASSTEDHIMPYDSEDDVLLANYVSQISDTDAPTFRHSPDLQQESEVEEECGSPVLQVIDVEQQLFDVFKDFTPIQSIEGIQIVEEKCSEREKMQVVVEDCQDKNLRVSPARQIKKLPQDTLEPPGFRGGSLDLDVVVGNHVLVTWNSRKYPGKVLAVSEEGAFITCMKKGKMYWRWPTIKDEQLYGWDHILCKIGPPKLEKKGCFSVPEMNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157681;
- 90% Identity
- iTF_01157682;
- 80% Identity
- -